Rorug06G0176400

Protein DA1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
27861291 .. 27861858
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0176400.1

Sequence Viewer

Length: 387 bp
ATGTTAAAAATTGTATGTTCTGATTTAGTTACAGTGCAAGCACAGAAAGAGGCTGCTCCAGACCTGCAATGCAAGGACAAGTTTATCCTTCAGTGTGTTAAAACCAATGATGGTGCAACTCCAAAAGAGATTACTCTAGAAGTGTTCAATAAAGAGGCAGGACATGTTGTTGTGGAGTGCAAATTGAGAGTGGTGTATGTTTCTCCACCTCAACCCCTTTCTTCTATCCCAGAAGAGTCAGAGGAAGGGTCTTCACCAAGAGGTTCAATTATGGAGAATGAAAATCTTAATGGTGCTGAGTTTTCCAATGCTGCAAAAGGATTTTCGGAGCAGCTTGAAGCTCTGGAGAGATCCGCAGAGGTAAATGCCTTCATGTGCAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.0

Weight (kDa)

4.75

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 72
AciI CCGC 1 cut(s) 354
AclWI GGATC 1 cut(s) 345
AcuI CTGAAG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 3 cut(s) 148, 267, 338
AluBI AGCT 2 cut(s) 334, 341
AluI AGCT 2 cut(s) 334, 341
AlwI GGATC 1 cut(s) 345
ApeKI GCWGC 3 cut(s) 53, 311, 331
AsuHPI GGTGA 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 40, 298, 343
BccI CCATC 1 cut(s) 104
BfaI CTAG 1 cut(s) 137
BfuAI ACCTGC 1 cut(s) 72
BisI GCNGC 3 cut(s) 54, 312, 332
BlsI GCNGC 3 cut(s) 55, 313, 333
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 2 cut(s) 42, 365
Bse3DI GCAATG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 288
BseXI GCAGC 3 cut(s) 40, 298, 343
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 72
BspPI GGATC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 74
BssMI GATC 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 297
BstKTI GATC 1 cut(s) 353
BstMBI GATC 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 167
BstV1I GCAGC 3 cut(s) 40, 298, 343
BstV2I GAAGAC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 39, 98
BveI ACCTGC 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 39
CviAII CATG 2 cut(s) 164, 373
CviJI RGCY 3 cut(s) 53, 334, 341
CviKI_1 RGCY 3 cut(s) 53, 334, 341
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 74
FaeI CATG 2 cut(s) 167, 376
FaiI YATR 5 cut(s) 16, 165, 198, 272, 374
FatI CATG 2 cut(s) 163, 372
Fnu4HI GCNGC 3 cut(s) 54, 312, 332
Fsp4HI GCNGC 3 cut(s) 54, 312, 332
FspBI CTAG 1 cut(s) 137
GluI GCNGC 3 cut(s) 54, 312, 332
GsuI CTGGAG 2 cut(s) 42, 365
Hin1II CATG 2 cut(s) 167, 376
HinfI GANTC 1 cut(s) 236
HphI GGTGA 1 cut(s) 246
Hpy188I TCNGA 3 cut(s) 22, 241, 328
Hpy188III TCNNGA 3 cut(s) 59, 137, 344
HpyAV CCTTC 3 cut(s) 98, 239, 379
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 7 cut(s) 37, 67, 72, 116, 180, 314, 378
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 2 cut(s) 167, 376
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 2 cut(s) 61, 328
LpnPI CCDG 5 cut(s) 72, 77, 144, 243, 329
Lsp1109I GCAGC 3 cut(s) 40, 298, 343
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 3 cut(s) 213, 243, 245
MflI RGATCY 1 cut(s) 350
MluCI AATT 4 cut(s) 9, 182, 267, 382
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 6 cut(s) 43, 148, 219, 235, 254, 352
MseI TTAA 4 cut(s) 5, 99, 288, 385
NdeII GATC 1 cut(s) 350
NlaIII CATG 2 cut(s) 167, 376
NspI RCATGY 1 cut(s) 167
PciI ACATGT 1 cut(s) 163
PkrI GCNGC 3 cut(s) 55, 313, 333
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PscI ACATGT 1 cut(s) 163
PsuI RGATCY 1 cut(s) 350
SaqAI TTAA 4 cut(s) 5, 99, 288, 385
SatI GCNGC 3 cut(s) 54, 312, 332
Sau3AI GATC 1 cut(s) 350
SchI GAGTC 1 cut(s) 245
SetI ASST 6 cut(s) 66, 211, 265, 336, 343, 363
Sse9I AATT 4 cut(s) 9, 182, 267, 382
SsiI CCGC 1 cut(s) 354
SspMI CTAG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 34
TasI AATT 4 cut(s) 9, 182, 267, 382
Tru1I TTAA 4 cut(s) 5, 99, 288, 385
Tru9I TTAA 4 cut(s) 5, 99, 288, 385
TscAI CASTG 2 cut(s) 39, 98
TseI GCWGC 3 cut(s) 53, 311, 331
TspDTI ATGAA 2 cut(s) 294, 361
TspRI CASTG 2 cut(s) 39, 98
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 1 cut(s) 167
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.