Rorug07G0220500

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000415
Physical Location & Seq
Reverse (-)
19847509 .. 19850866
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0220500.1

Sequence Viewer

Length: 480 bp
ATGCCAAAAGCAGAGGACTTGGGTAAAAATTACAAGACTTTAAATTTGAAGGCTTTCTCATTCCAAGAGCTCAGGGATTCAACCAATGGCTTCAGCAGGTTGCAAAAGCTTGGTGAAGGAGGCTTTGGGAGTGTGTATAAAGGAATAATCAAGCCCAAAAATGGCAAGGGCAGTCTAATTTTGGTTGCCATAAAGAAGTTGAATCCACATAGCTTACAGGGTCATAAAGCATGGCTTGCAGAGGTTCAATTTCTCGGTGCGGTAAATCACCCAAATCTGGTAAAGCTTCCAGGATATTGCTCTATAAATGGAGAAAGAGGGATTCAACGGCTATTGGTATATGAATATATGCCTAATAGAAGCTTAGAAGATCATGTTTTCAACAGGGCTTTGAACCCTCTTCCTTGGATCACGAGGTTACAAATAATGCTTGGTGCTGCTCAAGGATTGGCTTATCTACACGAGGAACTGGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

159

Amino Acids

17.8

Weight (kDa)

9.57

Isoelectric Point (pI)

26.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 32 - 156 7.4e-14 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 34 - 156 1.7e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 87
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 416
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 76
AfiI CCNNNNNNNGG 2 cut(s) 161, 277
AgsI TTSAA 7 cut(s) 49, 81, 202, 248, 326, 382, 394
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 5 cut(s) 70, 109, 213, 286, 363
AluI AGCT 5 cut(s) 70, 109, 213, 286, 363
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 1 cut(s) 416
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 28, 60
Asp700I GAANNNNTTC 1 cut(s) 53
AsuHPI GGTGA 2 cut(s) 125, 260
BanII GRGCYC 1 cut(s) 72
BauI CACGAG 2 cut(s) 412, 461
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 424
BceAI ACGGC 1 cut(s) 344
BciT130I CCWGG 1 cut(s) 291
BfaI CTAG 1 cut(s) 478
BfuAI ACCTGC 1 cut(s) 87
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 404
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 277
Bse1I ACTGG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 404
BseLI CCNNNNNNNGG 2 cut(s) 161, 277
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 1 cut(s) 474
BseXI GCAGC 1 cut(s) 424
BsiHKAI GWGCWC 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 161, 277
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 2 cut(s) 370, 408
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 87
BspPI GGATC 1 cut(s) 416
BsrI ACTGG 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 2 cut(s) 370, 408
BssSI CACGAG 2 cut(s) 412, 461
BssT1I CCWWGG 1 cut(s) 404
Bst2BI CACGAG 2 cut(s) 412, 461
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 71, 364
BstKTI GATC 2 cut(s) 373, 411
BstMBI GATC 2 cut(s) 370, 408
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 424
BveI ACCTGC 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 237
CviAII CATG 2 cut(s) 231, 374
DdeI CTNAG 2 cut(s) 71, 364
DpnI GATC 2 cut(s) 372, 410
DpnII GATC 2 cut(s) 370, 408
DraI TTTAAA 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 404
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 234, 377
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 2 cut(s) 230, 373
Fnu4HI GCNGC 1 cut(s) 438
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 1 cut(s) 478
GluI GCNGC 1 cut(s) 438
Hin1II CATG 2 cut(s) 234, 377
HindIII AAGCTT 3 cut(s) 107, 284, 361
HinfI GANTC 3 cut(s) 77, 202, 322
HphI GGTGA 2 cut(s) 125, 260
Hpy188III TCNNGA 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 43, 110
HpyCH4V TGCA 2 cut(s) 103, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 71, 364
Hsp92II CATG 2 cut(s) 234, 377
Kzo9I GATC 2 cut(s) 370, 408
LpnPI CCDG 8 cut(s) 58, 82, 203, 263, 276, 303, 370, 455
Lsp1109I GCAGC 1 cut(s) 424
MaeI CTAG 1 cut(s) 478
MaeIII GTNAC 1 cut(s) 417
MalI GATC 2 cut(s) 372, 410
MboI GATC 2 cut(s) 370, 408
MboII GAAGA 2 cut(s) 380, 392
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 4 cut(s) 28, 43, 177, 248
MnlI CCTC 7 cut(s) 7, 113, 235, 311, 408, 408, 457
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 2 cut(s) 370, 408
NlaIII CATG 2 cut(s) 234, 377
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 3 cut(s) 77, 202, 322
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 2 cut(s) 370, 408
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 72
SetI ASST 8 cut(s) 72, 101, 111, 215, 246, 288, 365, 419
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 4 cut(s) 28, 43, 177, 248
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 478
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 404
TasI AATT 4 cut(s) 28, 43, 177, 248
TfiI GAWTC 3 cut(s) 77, 202, 322
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 357
XapI RAATTY 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.