Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000415

Physical Location & Seq

Genomic Coordinates Forward (+)

3725811 .. 3729148

Gene Structure 3338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0052100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAAGGATTGGTGAATTCGTCTAGAATTACCGCCATTGGGACTCATTTTAGGCAAAAGAGCCATGCTTTTGTTCCTACATCTTCAGCGCAATTCACCAAAAGTTTGTATAGAAATAGAAATATTGGGATAGAGCAGCACCACAGATCTCTCAAGCCAATTGCTGCTTCCATTCAACCAGTAGAAGCCTCCCCATCAAGCCGCTTTGGCAACATGCTACCTTCTAAAGAGGTTCTTGAGTTATGGAGAAATGCTGATGCGGTCTGCTTTGATGTGGATAGCACGGTTTGCCTGGATGAGGGCATTGATGAACTTGCAGAATTTTGTGGAGCTGGAAAGGTTGTTGCAGAATGGACTTCTAGGGCAATGAGTGGTTCAGTACCTTTTGAGGAGGCTTTGGCTGCCAGATTATCTTTGTTTAATCCATCCCTGTCTCAAGTACAAGATTATCTTGAAAAGAGGCCCCCAAGGATTTCTCCTGGCATAGCCAAATTAGTCAACAAGCTGAAAGCTAATGGAACCACAGTCTACCTGGTCTCTGGAGGTTTCCGTCAAATGATAAAACCTGTTGCATCAATTCTTGGGATTCCGCCAGAAAACGTGTTTGCCAATCAACTACTATTTGGAAGTAATGGAGAGTTTGTCGGCTTTGATGAAAATGAGCCCACTTCAAGGAGTGGAGGAAAAGCCACTGCAGTGCAACGGATAAGGAAGGCTCATAATTACAAGGAATTAGTCATGATTGGGGATGGTGCGACTGATCTCGAGGCACGTCAACCTGGAGGTGCTGATTTGTTCATCTGCTATGCTGGTGTTCAACATCGGGAGGCTGTTGCAGCAAAGGCTGATTGGCTTGTTTTTAATTTCGAAGAGTTGATAAGTTCCTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0002791 GO:0002792 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0006928 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008283 GO:0009506 GO:0009894 GO:0009966 GO:0009987 GO:0010646 GO:0012505 GO:0016020 GO:0016477 GO:0016787 GO:0017171 GO:0019222 GO:0019538 GO:0023051 GO:0030054 GO:0030162 GO:0031090 GO:0031323 GO:0031329 GO:0031984 GO:0032268 GO:0032879 GO:0032880 GO:0040011 GO:0042058 GO:0042175 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048870 GO:0050708 GO:0050709 GO:0050789 GO:0050794 GO:0051046 GO:0051048 GO:0051049 GO:0051051 GO:0051171 GO:0051179 GO:0051223 GO:0051224 GO:0051246 GO:0051674 GO:0055044 GO:0060255 GO:0061136 GO:0065007 GO:0070011 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0098588 GO:0098791 GO:0098827 GO:0140096 GO:1901184 GO:1901564 GO:1903050 GO:1903362 GO:1903530 GO:1903531 GO:1904950

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhomboid

Protein Analysis

297

Amino Acids

32.39

Weight (kDa)

6.34

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	86 - 257	1.7e-15	haloacid dehalogenase-like hydrolase
HAD	PF12710	89 - 256	1.9e-13	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica	MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica	Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata	RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora	Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii	Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa	Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha	Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana	Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	4 cut(s)	33, 202, 260, 590
AcsI	RAATTY	2 cut(s)	16, 320
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	381, 441
AfiI	CCNNNNNNNGG	3 cut(s)	39, 298, 672
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	4 cut(s)	176, 455, 672, 818
AjiI	CACGTC	1 cut(s)	773
AjnI	CCWGG	4 cut(s)	291, 478, 531, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	3 cut(s)	332, 505, 512
AluI	AGCT	3 cut(s)	332, 505, 512
Alw26I	GTCTC	2 cut(s)	438, 541
Ama87I	CYCGRG	1 cut(s)	764
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	4 cut(s)	136, 164, 401, 836
ApoI	RAATTY	2 cut(s)	16, 320
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	25, 88
AsuII	TTCGAA	1 cut(s)	867
AvaI	CYCGRG	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	666
BbvI	GCAGC	4 cut(s)	148, 151, 388, 848
BccI	CCATC	3 cut(s)	202, 433, 743
BciT130I	CCWGG	4 cut(s)	293, 480, 533, 780
BcoDI	GTCTC	2 cut(s)	438, 541
BfaI	CTAG	2 cut(s)	24, 360
BfmI	CTRYAG	1 cut(s)	693
BglI	GCCNNNNNGGC	1 cut(s)	207
BglII	AGATCT	1 cut(s)	146
BisI	GCNGC	5 cut(s)	137, 165, 202, 402, 837
BlsI	GCNGC	5 cut(s)	138, 166, 203, 403, 838
Bme1390I	CCNGG	4 cut(s)	293, 480, 533, 780
BmeT110I	CYCGRG	1 cut(s)	764
BmgBI	CACGTC	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	2 cut(s)	464, 520
BmrFI	CCNGG	4 cut(s)	293, 480, 533, 780
BmsI	GCATC	2 cut(s)	247, 581
BpmI	CTGGAG	2 cut(s)	561, 801
Bpu14I	TTCGAA	1 cut(s)	867
BpuEI	CTTGAG	3 cut(s)	137, 257, 420
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	2 cut(s)	467, 885
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 298, 672
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	4 cut(s)	293, 480, 533, 780
BseDI	CCNNGG	2 cut(s)	467, 885
BseGI	GGATG	3 cut(s)	301, 425, 754
BseLI	CCNNNNNNNGG	3 cut(s)	39, 298, 672
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	4 cut(s)	148, 151, 388, 848
BshFI	GGCC	1 cut(s)	463
BsiHKCI	CYCGRG	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	3 cut(s)	39, 298, 672
BsmAI	GTCTC	2 cut(s)	438, 541
BsmFI	GGGAC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	463
Bso31I	GGTCTC	1 cut(s)	541
BsoBI	CYCGRG	1 cut(s)	764
Bsp119I	TTCGAA	1 cut(s)	867
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	2 cut(s)	146, 760
BspACI	CCGC	4 cut(s)	33, 202, 260, 590
BspANI	GGCC	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	2 cut(s)	464, 520
BspMAI	CTGCAG	1 cut(s)	697
BspT104I	TTCGAA	1 cut(s)	867
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	467, 885
BssMI	GATC	2 cut(s)	146, 760
BssT1I	CCWWGG	2 cut(s)	467, 885
Bst2UI	CCWGG	4 cut(s)	293, 480, 533, 780
Bst4CI	ACNGT	2 cut(s)	286, 526
Bst6I	CTCTTC	1 cut(s)	864
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstBI	TTCGAA	1 cut(s)	867
BstENI	CCTNNNNNAGG	1 cut(s)	296
BstF5I	GGATG	3 cut(s)	301, 425, 754
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	2 cut(s)	149, 763
BstMAI	GTCTC	2 cut(s)	438, 541
BstMBI	GATC	2 cut(s)	146, 760
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 288, 401, 836, 842
BstNI	CCWGG	4 cut(s)	293, 480, 533, 780
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	4 cut(s)	291, 478, 531, 778
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	4 cut(s)	148, 151, 388, 848
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	463
BtrI	CACGTC	1 cut(s)	773
BtsCI	GGATG	3 cut(s)	301, 425, 754
BtsI	GCAGTG	2 cut(s)	690, 702
BtsIMutI	CAGTG	2 cut(s)	690, 702
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	462
CsiI	ACCWGGT	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	380, 440
CviAII	CATG	3 cut(s)	65, 214, 739
CviQI	GTAC	2 cut(s)	380, 440
DpnI	GATC	2 cut(s)	148, 762
DpnII	GATC	2 cut(s)	146, 760
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
EciI	GGCGGA	1 cut(s)	579
Eco130I	CCWWGG	2 cut(s)	467, 885
Eco24I	GRGCYC	1 cut(s)	666
Eco31I	GGTCTC	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	764
EcoNI	CCTNNNNNAGG	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	4 cut(s)	291, 478, 531, 778
EcoT14I	CCWWGG	2 cut(s)	467, 885
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	2 cut(s)	467, 885
FaeI	CATG	3 cut(s)	68, 217, 742
FaiI	YATR	8 cut(s)	66, 111, 215, 244, 485, 720, 740, 807
FalI	AAGNNNNNCTT	4 cut(s)	219, 251, 435, 467
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	3 cut(s)	64, 213, 738
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	5 cut(s)	137, 165, 202, 402, 837
FokI	GGATG	3 cut(s)	308, 412, 761
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	5 cut(s)	137, 165, 202, 402, 837
FspBI	CTAG	2 cut(s)	24, 360
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	5 cut(s)	137, 165, 202, 402, 837
GsuI	CTGGAG	2 cut(s)	561, 801
HaeIII	GGCC	1 cut(s)	463
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	68, 217, 742
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	2 cut(s)	499, 776
HindII	GTYRAC	2 cut(s)	499, 776
HinfI	GANTC	2 cut(s)	43, 586
HphI	GGTGA	2 cut(s)	25, 88
Hpy166II	GTNNAC	3 cut(s)	499, 529, 776
Hpy188III	TCNNGA	7 cut(s)	24, 236, 452, 540, 739, 764, 824
Hpy8I	GTNNAC	3 cut(s)	499, 529, 776
HpyAV	CCTTC	2 cut(s)	231, 706
HpyCH4III	ACNGT	2 cut(s)	286, 526
HpyCH4IV	ACGT	2 cut(s)	600, 772
HpyCH4V	TGCA	6 cut(s)	317, 347, 572, 695, 700, 836
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 288, 401, 836, 842
HpySE526I	ACGT	2 cut(s)	600, 772
Hsp92II	CATG	3 cut(s)	68, 217, 742
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	146, 760
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	4 cut(s)	148, 151, 388, 848
LweI	GCATC	2 cut(s)	247, 581
MabI	ACCWGGT	1 cut(s)	531
MaeI	CTAG	2 cut(s)	24, 360
MaeII	ACGT	2 cut(s)	600, 772
MalI	GATC	2 cut(s)	148, 762
MboI	GATC	2 cut(s)	146, 760
MboII	GAAGA	2 cut(s)	75, 881
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	666
MlyI	GAGTC	1 cut(s)	37
MseI	TTAA	2 cut(s)	420, 861
MslI	CAYNNNNRTG	1 cut(s)	695
MspR9I	CCNGG	4 cut(s)	293, 480, 533, 780
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	4 cut(s)	293, 480, 533, 780
MwoI	GCNNNNNNNGC	5 cut(s)	207, 288, 401, 836, 842
NdeII	GATC	2 cut(s)	146, 760
NlaIII	CATG	3 cut(s)	68, 217, 742
NlaIV	GGNNCC	2 cut(s)	464, 520
NspI	RCATGY	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	867
OliI	CACNNNNGTG	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	764
PagI	TCATGA	1 cut(s)	738
PfeI	GAWTC	1 cut(s)	586
PkrI	GCNGC	5 cut(s)	138, 166, 203, 403, 838
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
Psp6I	CCWGG	4 cut(s)	291, 478, 531, 778
PspGI	CCWGG	4 cut(s)	291, 478, 531, 778
PspN4I	GGNNCC	2 cut(s)	464, 520
PspPI	GGNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	146
RsaI	GTAC	2 cut(s)	381, 441
RsaNI	GTAC	2 cut(s)	380, 440
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	2 cut(s)	420, 861
SatI	GCNGC	5 cut(s)	137, 165, 202, 402, 837
Sau3AI	GATC	2 cut(s)	146, 760
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	4 cut(s)	293, 480, 533, 780
SduI	GDGCHC	1 cut(s)	666
SexAI	ACCWGGT	1 cut(s)	531
SfaNI	GCATC	2 cut(s)	247, 581
SfcI	CTRYAG	1 cut(s)	693
Sfr274I	CTCGAG	1 cut(s)	764
SfuI	TTCGAA	1 cut(s)	867
SlaI	CTCGAG	1 cut(s)	764
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	4 cut(s)	152, 236, 435, 764
SmoI	CTYRAG	4 cut(s)	152, 236, 435, 764
SsiI	CCGC	4 cut(s)	33, 202, 260, 590
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	2 cut(s)	24, 360
StyD4I	CCNGG	4 cut(s)	291, 478, 531, 778
StyI	CCWWGG	2 cut(s)	467, 885
TaaI	ACNGT	2 cut(s)	286, 526
TaiI	ACGT	2 cut(s)	603, 775
TaqI	TCGA	2 cut(s)	765, 867
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	2 cut(s)	420, 861
Tru9I	TTAA	2 cut(s)	420, 861
TscAI	CASTG	2 cut(s)	697, 702
TseI	GCWGC	4 cut(s)	136, 164, 401, 836
TspDTI	ATGAA	3 cut(s)	324, 669, 787
TspGWI	ACGGA	2 cut(s)	539, 718
TspRI	CASTG	2 cut(s)	697, 702
XagI	CCTNNNNNAGG	1 cut(s)	296
XapI	RAATTY	2 cut(s)	16, 320
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	764
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	2 cut(s)	24, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.