Rorug06G0006300

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000415
Physical Location & Seq
Forward (+)
983340 .. 992570
9231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0006300.1

Sequence Viewer

Length: 2763 bp
ATGGAGGCGATCGAAGAGTTGTTGCAACTGTCAGACTCGATGCGCCAAGGTCAGGCCGTCCTCGCCGACGAAGACGTTGACGAAAACTCTACCGCCTCCTCCCGCCGCTCCTCAACTTTCCTCAACGTCGTCGCTCTCGGCAATGTTGGTGCCGGTAAATCAGCTGTTTTGAACAGCTTAATTGGACATCCTGTTTTGCCGACTGGTGAGAATGGTGCTACTCGAGCTCCAATCAGCATTGATTTACAGAGGGACGGTTCATTGAGCAGCAAATCGATAATATTGCAGATTGACAATAAATCCCAGCAAGTTTCTGCAAGTGCTTTACGGCATTCTCTGCAAGATAGACTGAGTAAGAGTTCTTCAGGCAGAACCCGAGATGAAATTTACTTGAAACTACGGACAAGTACAGCCCCTCCCCTCAAATTGATTGATTTACCTGGGCTTGATCAACGGACTGTGGATGAGTCTATGCTAAGTGAATATGCCGAGCACAATGATGCAATTTTGTTGGTTATAATACCTGCATCACAAGCACCTGAAGTTGCTTCCTCTAAAGCCCTCAGAGCTGTCAAGGAATATGATGGAGATGGTACACGAACTGTTGGAGTAATCAGTAAGATAGACCAAGCCGCGTCAGATCCGAAAGCACTTGCTGCAGTCCAGGCTCTGCTTTTAAATCAGGGGCCATCAAGAGCATCTGATATTCCCTGGGTTGCTCTAATAGGTCAATCAGTTTCGATAGCTTCCGCACAGTCTGGCTCTGAGAATTCTTTGGAAACTGCTTGGAGGGCTGAAAGTGAAAGTCTTAAATCCATTCTGACCGGTGCTCCTCAAAGTAAGCTAGGCAGAATTGCGCTAGTGGATGCTTTGGCCCAGCAAATTCGCAGTCGCATGAAAATCCGGCTTCCGAACCTCCTTTCTGGGTTACAAGGGAAGTCTCAAATAGTTCAGGATGAGTTGGTAAAGCTTGGTGCATCCATGGTACAGAGTGCTGAAGGTACTAGATCTCTTGCTCTGGAGCTTTGTCGTGAATTTGAGGATAAGTTTCTCCTACACATTACATCTGGTGAGGGCTCTGGTTGGAAAATTGTTGCAAGTTTTGAAGGAAATTTTCCCAATAGAATAAAGCAACTACCATTGGATCGACATTTTGATATCAACAATGTGAAGAGGATTGTGTTGGAAGCAGATGGTTATCAGCCTTATCTCATATCTCCTGAAAAAGGTTTGAGGTCATTAATAAAAGGTGTCTTAGAGCTTGCGAAGGAACCATCACGTCTTTGTGTGGATGAGGTACACCGTGTCCTGGTAGACATAGTGTCTGCTGCTGCAAATGCTACTCCAGGTCTTGGAAGATACCCTCCTTTCAAGAGGGAGGTCGTGGCCATTGCAACTGGTGCATTAGATGTGTTCAAGACTGATGCAAAGAAAATGGTGGTTGCACTAGTTGATATGGAGCGTGCTTTTGTGCCTCCTCAACATTTCATTCGCTTGGTACAGAGGAGGATGGAGAGGCAGCGTAGAGAGGAAGAAGTCAAAACTCGATCCTCGAAAAAAGGACAAGAGGCAGAGCAATCAGTAATGAACAGGGCAAGTAGTCCTCAAACAGGGGGTCAGCAATCTGGTGGAACCCTGAAATCGTTGAAGGATAAATTTAGCAAGGAGGAGAAAGAAGTCCCAGAAGCATCTGGTTTGAAGACCGCAGGTCCTGAAGGGGAAATAACAGCAGGGTTCTTATATAAAAAGAGTGCCAAAAGTAATGAGTGGAACAAGCGATGGTTTGTTCTGAATGAGAAGACTGGGAAGCTTGGTTACACCAAAAAGCAAGAGGAAAGGCATTTTCGTGGTGTCATCACTTTGGAGGAATGTAATATTGAAGAGATTGAAGAGGAAGAACCTGCTCCTCCACCAAAGAGTTCAAAGGATAAGAAGGCGAATGGGCCAGAAAAAGCACCTAGTCTTGCATTTAAGTTTACTAGCAAGGTTCCGTACAAAACTGTTCTGAAAGCACATAGTGCCGTTGTGTTGAAAGCTGAGACTGTGGCAGACAAGGTTGAGTGGATAAATAAGATTTCAAAGGTTATCCAACCTTCTAAAGGAGCACCGCGGGGTGCACCATCTGATGGTGGTCCTACTATGCGACAGAGTCTTTCTGATGGTTCTCTTGATACTATGACTCGAAGACCTGCTGACCCGGAAGAAGAACTCCGGTGGATGTCTCAAGAAGTTAGAGGTTACGTTGAAGCTGTTTTGAATAGTTTGGCTGCTAATGTCCCTAAGGCAGTTGTTCTTTGCCAAGTCGAAAAAGCCAAGGAAGACATGCTAAATCAGTTATATAGCTCTATCAGTGCTCAAAGCACAGCGAAGATTGAAGAGCTGCTTCAAGAGGATGGTAATGTAAAGAGACGAAGAGAGAAATACCAGAAACAGTCCTCTCTCCTTTCCAAGCTAACACGCCAACTCAGCATTCATGACAACCGAGCGGCTGCTGCCTCTGGCTGGTCCAACGGTGGTGCAACTGAAAGCAGCCCAAGAACTAGTAGCTCCTCAGGTGATGACTGGAGATCTGCATTTGATGCTGCTGCCAACGGTCCAGTTGACCGTTCATTATCTAGATCTTCATCCAATGGCCATAGTCGACACTATAGCGATCCCGCACAAAATGGTGATGTGAGTGCTGGTCCAAACTCTGGCAGCCGACGTACTCCTAATCGGTTGCCACCTCCACCACCTGGGTCTTCAGGAAGCAGATACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
ABC_tran

Protein Analysis

920

Amino Acids

99.98

Weight (kDa)

9.09

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 43 - 207 7.1e-32 Dynamin family
Dynamin_M PF01031 258 - 495 5.5e-22 Dynamin central region
PH PF00169 577 - 696 1.3e-11 PH domain
GED PF02212 735 - 817 1.8e-13 Dynamin GTPase effector domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
Acc36I ACCTGC 4 cut(s) 532, 1697, 1909, 2197
AccB1I GGYRCC 1 cut(s) 149
AccB7I CCANNNNNTGG 4 cut(s) 1352, 2126, 2693, 2735
AccBSI CCGCTC 2 cut(s) 108, 2486
AccI GTMKAC 2 cut(s) 1314, 2641
AccII CGCG 2 cut(s) 635, 2110
AclWI GGATC 4 cut(s) 635, 1152, 1542, 2648
AcoI YGGCCR 2 cut(s) 1386, 2632
AcsI RAATTY 6 cut(s) 384, 769, 882, 1034, 1111, 1655
AcuI CTGAAG 5 cut(s) 348, 561, 1017, 1734, 2727
AdeI CACNNNGTG 1 cut(s) 2018
AfaI GTAC 8 cut(s) 409, 595, 987, 1003, 1299, 1500, 1994, 2707
AgeI ACCGGT 1 cut(s) 824
AhdI GACNNNNNGTC 2 cut(s) 1321, 1707
AhlI ACTAGT 2 cut(s) 1447, 2540
AjiI CACGTC 1 cut(s) 1280
AjnI CCWGG 6 cut(s) 439, 663, 710, 1308, 1345, 2734
AjuI GAANNNNNNNTTGG 2 cut(s) 2454, 2486
Alw21I GWGCWC 6 cut(s) 229, 495, 832, 2107, 2119, 2356
Alw26I GTCTC 4 cut(s) 945, 2033, 2226, 2401
Alw44I GTGCAC 1 cut(s) 2115
AlwI GGATC 4 cut(s) 635, 1152, 1542, 2648
AlwNI CAGNNNCTG 2 cut(s) 670, 1712
Ama87I CYCGRG 2 cut(s) 222, 375
AoxI GGCC 6 cut(s) 54, 686, 873, 1386, 1943, 2632
ApaLI GTGCAC 1 cut(s) 2115
ApoI RAATTY 6 cut(s) 384, 769, 882, 1034, 1111, 1655
ArsI GACNNNNNNTTYG 4 cut(s) 874, 906, 1600, 1632
AseI ATTAAT 1 cut(s) 1241
AsiGI ACCGGT 1 cut(s) 824
AspLEI GCGC 2 cut(s) 45, 859
AspS9I GGNCC 8 cut(s) 686, 874, 1709, 1943, 2132, 2505, 2594, 2684
AsuC2I CCSGG 1 cut(s) 2198
AsuHPI GGTGA 4 cut(s) 218, 1082, 2567, 2681
AvaI CYCGRG 2 cut(s) 222, 375
AvaII GGWCC 5 cut(s) 1709, 2132, 2505, 2594, 2684
AxyI CCTNAGG 2 cut(s) 2280, 2551
BaeGI GKGCMC 1 cut(s) 2119
BalI TGGCCA 2 cut(s) 1388, 2634
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 2 cut(s) 229, 1079
BarI GAAGNNNNNNTAC 4 cut(s) 346, 378, 1799, 1831
BbsI GAAGAC 6 cut(s) 78, 1706, 1805, 2191, 2325, 2733
Bbv12I GWGCWC 6 cut(s) 229, 495, 832, 2107, 2119, 2356
BceAI ACGGC 3 cut(s) 41, 344, 2006
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 6 cut(s) 441, 665, 712, 1310, 1347, 2736
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 2198
BcoDI GTCTC 4 cut(s) 945, 2033, 2226, 2401
BcuI ACTAGT 2 cut(s) 1447, 2540
BfaI CTAG 8 cut(s) 845, 860, 1005, 1448, 1959, 1980, 2541, 2616
BfmI CTRYAG 2 cut(s) 657, 2647
BfuAI ACCTGC 4 cut(s) 532, 1697, 1909, 2197
BglII AGATCT 3 cut(s) 1007, 2567, 2618
Bme1390I CCNGG 7 cut(s) 441, 665, 712, 1310, 1347, 2198, 2736
Bme18I GGWCC 5 cut(s) 1709, 2132, 2505, 2594, 2684
BmeRI GACNNNNNGTC 2 cut(s) 1321, 1707
BmeT110I CYCGRG 2 cut(s) 222, 375
BmgBI CACGTC 1 cut(s) 1280
BmgT120I GGNCC 8 cut(s) 686, 874, 1709, 1943, 2132, 2505, 2594, 2684
BmiI GGNNCC 5 cut(s) 151, 687, 1272, 1633, 1989
BmrFI CCNGG 7 cut(s) 441, 665, 712, 1310, 1347, 2198, 2736
BmrI ACTGGG 1 cut(s) 1812
BmsI GCATC 9 cut(s) 30, 490, 536, 707, 856, 986, 1414, 1697, 2569
BmuI ACTGGG 1 cut(s) 1812
BpiI GAAGAC 6 cut(s) 78, 1706, 1805, 2191, 2325, 2733
BpmI CTGGAG 3 cut(s) 1040, 1329, 2584
BpuEI CTTGAG 1 cut(s) 2208
BpuMI CCSGG 1 cut(s) 2198
Bsa29I ATCGAT 1 cut(s) 275
BsaBI GATNNNNATC 2 cut(s) 1197, 2623
BsaJI CCNNGG 8 cut(s) 46, 440, 710, 711, 981, 2108, 2313, 2735
BsaWI WCCGGW 2 cut(s) 824, 2211
BsaXI ACNNNNNCTCC 6 cut(s) 211, 241, 400, 430, 814, 844
Bse118I RCCGGY 2 cut(s) 152, 824
Bse1I ACTGG 5 cut(s) 208, 1402, 1807, 2567, 2597
Bse21I CCTNAGG 2 cut(s) 2280, 2551
Bse3DI GCAATG 2 cut(s) 148, 1389
Bse8I GATNNNNATC 2 cut(s) 1197, 2623
BseBI CCWGG 6 cut(s) 441, 665, 712, 1310, 1347, 2736
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 8 cut(s) 46, 440, 710, 711, 981, 2108, 2313, 2735
BseJI GATNNNNATC 2 cut(s) 1197, 2623
BseMI GCAATG 2 cut(s) 148, 1389
BseMII CTCAG 6 cut(s) 341, 577, 756, 2028, 2479, 2565
BseNI ACTGG 5 cut(s) 208, 1402, 1807, 2567, 2597
BseRI GAGGAG 8 cut(s) 88, 100, 822, 1467, 1519, 1682, 1896, 2539
BseSI GKGCMC 1 cut(s) 2119
BseYI CCCAGC 2 cut(s) 303, 876
Bsh1236I CGCG 2 cut(s) 635, 2110
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 6 cut(s) 56, 688, 875, 1388, 1945, 2634
BshNI GGYRCC 1 cut(s) 149
BshTI ACCGGT 1 cut(s) 824
BshVI ATCGAT 1 cut(s) 275
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 6 cut(s) 229, 495, 832, 2107, 2119, 2356
BsiHKCI CYCGRG 2 cut(s) 222, 375
BsiSI CCGG 5 cut(s) 153, 825, 904, 2198, 2212
BslFI GGGAC 3 cut(s) 266, 1664, 2261
BsmAI GTCTC 4 cut(s) 945, 2033, 2226, 2401
BsmBI CGTCTC 1 cut(s) 2401
BsmFI GGGAC 3 cut(s) 266, 1664, 2261
BsmI GAATGC 2 cut(s) 331, 2469
BsnI GGCC 6 cut(s) 56, 688, 875, 1388, 1945, 2634
BsoBI CYCGRG 2 cut(s) 222, 375
Bsp1286I GDGCHC 7 cut(s) 229, 495, 832, 1079, 2107, 2119, 2356
Bsp143I GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2567, 2618, 2653
Bsp19I CCATGG 1 cut(s) 981
BspANI GGCC 6 cut(s) 56, 688, 875, 1388, 1945, 2634
BspCNI CTCAG 6 cut(s) 342, 576, 757, 2029, 2478, 2564
BspDI ATCGAT 1 cut(s) 275
BspFNI CGCG 2 cut(s) 635, 2110
BspHI TCATGA 1 cut(s) 2473
BspLI GGNNCC 5 cut(s) 151, 687, 1272, 1633, 1989
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 4 cut(s) 532, 1697, 1909, 2197
BspPI GGATC 4 cut(s) 635, 1152, 1542, 2648
BspQI GCTCTTC 1 cut(s) 2370
BspT107I GGYRCC 1 cut(s) 149
BsrBI CCGCTC 2 cut(s) 108, 2486
BsrDI GCAATG 2 cut(s) 148, 1389
BsrFI RCCGGY 2 cut(s) 152, 824
BsrI ACTGG 5 cut(s) 208, 1402, 1807, 2567, 2597
BssAI RCCGGY 2 cut(s) 152, 824
BssECI CCNNGG 8 cut(s) 46, 440, 710, 711, 981, 2108, 2313, 2735
BssMI GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2567, 2618, 2653
BssT1I CCWWGG 3 cut(s) 46, 981, 2313
Bst2UI CCWGG 6 cut(s) 441, 665, 712, 1310, 1347, 2736
Bst6I CTCTTC 6 cut(s) 9, 1166, 1875, 1884, 2370, 2407
BstAPI GCANNNNNTGC 5 cut(s) 337, 656, 1400, 2018, 2579
BstC8I GCNNGC 2 cut(s) 1263, 1464
BstDEI CTNAG 9 cut(s) 350, 476, 563, 765, 1255, 2037, 2280, 2465, 2551
BstDSI CCRYGG 2 cut(s) 981, 2108
BstENI CCTNNNNNAGG 3 cut(s) 1224, 1608, 2097
BstFNI CGCG 2 cut(s) 635, 2110
BstHHI GCGC 2 cut(s) 45, 859
BstKTI GATC 9 cut(s) 12, 451, 643, 1010, 1147, 1550, 2570, 2621, 2656
BstMAI GTCTC 4 cut(s) 945, 2033, 2226, 2401
BstMBI GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2567, 2618, 2653
BstMCI CGRYCG 1 cut(s) 12
BstNI CCWGG 6 cut(s) 441, 665, 712, 1310, 1347, 2736
BstNSI RCATGY 1 cut(s) 2326
BstSCI CCNGG 7 cut(s) 439, 663, 710, 1308, 1345, 2196, 2734
BstSFI CTRYAG 2 cut(s) 657, 2647
BstSLI GKGCMC 1 cut(s) 2119
BstUI CGCG 2 cut(s) 635, 2110
BstV2I GAAGAC 6 cut(s) 78, 1706, 1805, 2191, 2325, 2733
BstX2I RGATCY 4 cut(s) 640, 1007, 2567, 2618
BstYI RGATCY 4 cut(s) 640, 1007, 2567, 2618
Bsu15I ATCGAT 1 cut(s) 275
Bsu36I CCTNAGG 2 cut(s) 2280, 2551
BsuRI GGCC 6 cut(s) 56, 688, 875, 1388, 1945, 2634
BsuTUI ATCGAT 1 cut(s) 275
BtgI CCRYGG 2 cut(s) 981, 2108
BtgZI GCGATG 1 cut(s) 1792
BtrI CACGTC 1 cut(s) 1280
BtsIMutI CAGTG 1 cut(s) 2356
BveI ACCTGC 4 cut(s) 532, 1697, 1909, 2197
Cac8I GCNNGC 2 cut(s) 1263, 1464
CaiI CAGNNNCTG 2 cut(s) 670, 1712
CciI TCATGA 1 cut(s) 2473
CfoI GCGC 2 cut(s) 45, 859
Cfr10I RCCGGY 2 cut(s) 152, 824
Cfr13I GGNCC 8 cut(s) 686, 874, 1709, 1943, 2132, 2505, 2594, 2684
Cfr42I CCGCGG 1 cut(s) 2111
ClaI ATCGAT 1 cut(s) 275
CseI GACGC 1 cut(s) 624
Csp6I GTAC 8 cut(s) 408, 594, 986, 1002, 1298, 1499, 1993, 2706
CspAI ACCGGT 1 cut(s) 824
CviAII CATG 4 cut(s) 895, 982, 2323, 2474
CviQI GTAC 8 cut(s) 408, 594, 986, 1002, 1298, 1499, 1993, 2706
DdeI CTNAG 9 cut(s) 350, 476, 563, 765, 1255, 2037, 2280, 2465, 2551
DpnI GATC 9 cut(s) 11, 450, 642, 1009, 1146, 1549, 2569, 2620, 2655
DpnII GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2567, 2618, 2653
DraI TTTAAA 1 cut(s) 678
DraIII CACNNNGTG 1 cut(s) 2018
DriI GACNNNNNGTC 2 cut(s) 1321, 1707
EaeI YGGCCR 2 cut(s) 1386, 2632
Eam1104I CTCTTC 6 cut(s) 9, 1166, 1875, 1884, 2370, 2407
Eam1105I GACNNNNNGTC 2 cut(s) 1321, 1707
EarI CTCTTC 6 cut(s) 9, 1166, 1875, 1884, 2370, 2407
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 3 cut(s) 46, 981, 2313
Eco24I GRGCYC 2 cut(s) 229, 1079
Eco32I GATATC 1 cut(s) 1159
Eco47I GGWCC 5 cut(s) 1709, 2132, 2505, 2594, 2684
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 5 cut(s) 348, 561, 1017, 1734, 2727
Eco81I CCTNAGG 2 cut(s) 2280, 2551
Eco88I CYCGRG 2 cut(s) 222, 375
EcoICRI GAGCTC 1 cut(s) 227
EcoNI CCTNNNNNAGG 3 cut(s) 1224, 1608, 2097
EcoO109I RGGNCCY 1 cut(s) 1709
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 6 cut(s) 439, 663, 710, 1308, 1345, 2734
EcoRV GATATC 1 cut(s) 1159
EcoT14I CCWWGG 3 cut(s) 46, 981, 2313
EcoT38I GRGCYC 2 cut(s) 229, 1079
ErhI CCWWGG 3 cut(s) 46, 981, 2313
Esp3I CGTCTC 1 cut(s) 2401
FaeI CATG 4 cut(s) 898, 985, 2326, 2477
FalI AAGNNNNNCTT 2 cut(s) 2367, 2399
FaqI GGGAC 3 cut(s) 266, 1664, 2261
FatI CATG 4 cut(s) 894, 981, 2322, 2473
FauI CCCGC 3 cut(s) 110, 2103, 2665
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 2 cut(s) 1314, 2641
FriOI GRGCYC 2 cut(s) 229, 1079
FspBI CTAG 8 cut(s) 845, 860, 1005, 1448, 1959, 1980, 2541, 2616
GlaI GCGC 2 cut(s) 44, 858
GsaI CCCAGC 2 cut(s) 307, 880
GsuI CTGGAG 3 cut(s) 1040, 1329, 2584
HaeIII GGCC 6 cut(s) 56, 688, 875, 1388, 1945, 2634
HapII CCGG 5 cut(s) 153, 825, 904, 2198, 2212
HgaI GACGC 1 cut(s) 624
HhaI GCGC 2 cut(s) 45, 859
Hin1II CATG 4 cut(s) 898, 985, 2326, 2477
Hin6I GCGC 2 cut(s) 43, 857
HinP1I GCGC 2 cut(s) 43, 857
HincII GTYRAC 3 cut(s) 79, 2602, 2642
HindII GTYRAC 3 cut(s) 79, 2602, 2642
HindIII AAGCTT 2 cut(s) 968, 1808
HinfI GANTC 4 cut(s) 35, 467, 2149, 2179
HpaII CCGG 5 cut(s) 153, 825, 904, 2198, 2212
HphI GGTGA 4 cut(s) 218, 1082, 2567, 2681
Hpy166II GTNNAC 8 cut(s) 79, 596, 1300, 1315, 1977, 2117, 2602, 2642
Hpy8I GTNNAC 8 cut(s) 79, 596, 1300, 1315, 1977, 2117, 2602, 2642
Hpy99I CGWCG 4 cut(s) 71, 131, 134, 2706
HpyAV CCTTC 7 cut(s) 992, 1100, 1261, 1642, 1709, 1927, 2103
HpyCH4IV ACGT 5 cut(s) 75, 126, 1279, 2241, 2704
HpyF3I CTNAG 9 cut(s) 350, 476, 563, 765, 1255, 2037, 2280, 2465, 2551
HpySE526I ACGT 5 cut(s) 75, 126, 1279, 2241, 2704
Hsp92II CATG 4 cut(s) 898, 985, 2326, 2477
HspAI GCGC 2 cut(s) 43, 857
Ksp22I TGATCA 1 cut(s) 448
KspI CCGCGG 1 cut(s) 2111
Kzo9I GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2567, 2618, 2653
LguI GCTCTTC 1 cut(s) 2370
LmnI GCTCC 8 cut(s) 113, 232, 835, 1021, 1459, 1909, 2102, 2552
LweI GCATC 9 cut(s) 30, 490, 536, 707, 856, 986, 1414, 1697, 2569
MaeI CTAG 8 cut(s) 845, 860, 1005, 1448, 1959, 1980, 2541, 2616
MaeII ACGT 5 cut(s) 75, 126, 1279, 2241, 2704
MaeIII GTNAC 3 cut(s) 927, 1814, 2237
MalI GATC 9 cut(s) 11, 450, 642, 1009, 1146, 1549, 2569, 2620, 2655
MbiI CCGCTC 2 cut(s) 108, 2486
MboI GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2567, 2618, 2653
MflI RGATCY 4 cut(s) 640, 1007, 2567, 2618
MhlI GDGCHC 7 cut(s) 229, 495, 832, 1079, 2107, 2119, 2356
MlsI TGGCCA 2 cut(s) 1388, 2634
MluNI TGGCCA 2 cut(s) 1388, 2634
MlyI GAGTC 4 cut(s) 29, 476, 2158, 2173
MmeI TCCRAC 5 cut(s) 586, 1064, 1164, 2113, 2532
Mox20I TGGCCA 2 cut(s) 1388, 2634
MscI TGGCCA 2 cut(s) 1388, 2634
MseI TTAA 5 cut(s) 179, 677, 810, 1241, 1971
MslI CAYNNNNRTG 2 cut(s) 498, 1845
Msp20I TGGCCA 2 cut(s) 1388, 2634
MspA1I CMGCKG 2 cut(s) 164, 2110
MspI CCGG 5 cut(s) 153, 825, 904, 2198, 2212
MspR9I CCNGG 7 cut(s) 441, 665, 712, 1310, 1347, 2198, 2736
Mva1269I GAATGC 2 cut(s) 331, 2469
MvaI CCWGG 6 cut(s) 441, 665, 712, 1310, 1347, 2736
MvnI CGCG 2 cut(s) 635, 2110
NciI CCSGG 1 cut(s) 2198
NcoI CCATGG 1 cut(s) 981
NdeII GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2567, 2618, 2653
NlaIII CATG 4 cut(s) 898, 985, 2326, 2477
NlaIV GGNNCC 5 cut(s) 151, 687, 1272, 1633, 1989
NmeAIII GCCGAG 2 cut(s) 117, 514
NspI RCATGY 1 cut(s) 2326
PaeR7I CTCGAG 1 cut(s) 222
PagI TCATGA 1 cut(s) 2473
PasI CCCWGGG 1 cut(s) 711
PciSI GCTCTTC 1 cut(s) 2370
PctI GAATGC 2 cut(s) 331, 2469
PflFI GACNNNGTC 1 cut(s) 2148
PflMI CCANNNNNTGG 4 cut(s) 1352, 2126, 2693, 2735
PinAI ACCGGT 1 cut(s) 824
Ple19I CGATCG 1 cut(s) 12
PleI GAGTC 4 cut(s) 29, 475, 2157, 2173
PpsI GAGTC 4 cut(s) 29, 475, 2157, 2173
PpuMI RGGWCCY 1 cut(s) 1709
PshBI ATTAAT 1 cut(s) 1241
PsiI TTATAA 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 1709
Psp6I CCWGG 6 cut(s) 439, 663, 710, 1308, 1345, 2734
PspFI CCCAGC 2 cut(s) 303, 876
PspGI CCWGG 6 cut(s) 439, 663, 710, 1308, 1345, 2734
PspN4I GGNNCC 5 cut(s) 151, 687, 1272, 1633, 1989
PspPI GGNCC 8 cut(s) 686, 874, 1709, 1943, 2132, 2505, 2594, 2684
PspPPI RGGWCCY 1 cut(s) 1709
PspXI VCTCGAGB 1 cut(s) 222
PstI CTGCAG 1 cut(s) 661
PstNI CAGNNNCTG 2 cut(s) 670, 1712
PsuI RGATCY 4 cut(s) 640, 1007, 2567, 2618
PsyI GACNNNGTC 1 cut(s) 2148
PvuI CGATCG 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 8 cut(s) 409, 595, 987, 1003, 1299, 1500, 1994, 2707
RsaNI GTAC 8 cut(s) 408, 594, 986, 1002, 1298, 1499, 1993, 2706
RseI CAYNNNNRTG 2 cut(s) 498, 1845
SacI GAGCTC 1 cut(s) 229
SacII CCGCGG 1 cut(s) 2111
SalI GTCGAC 1 cut(s) 2640
SapI GCTCTTC 1 cut(s) 2370
SaqAI TTAA 5 cut(s) 179, 677, 810, 1241, 1971
Sau3AI GATC 9 cut(s) 9, 448, 640, 1007, 1144, 1547, 2567, 2618, 2653
Sau96I GGNCC 8 cut(s) 686, 874, 1709, 1943, 2132, 2505, 2594, 2684
SchI GAGTC 4 cut(s) 29, 476, 2158, 2173
ScrFI CCNGG 7 cut(s) 441, 665, 712, 1310, 1347, 2198, 2736
SduI GDGCHC 7 cut(s) 229, 495, 832, 1079, 2107, 2119, 2356
SfaNI GCATC 9 cut(s) 30, 490, 536, 707, 856, 986, 1414, 1697, 2569
SfcI CTRYAG 2 cut(s) 657, 2647
Sfr274I CTCGAG 1 cut(s) 222
Sfr303I CCGCGG 1 cut(s) 2111
SgrBI CCGCGG 1 cut(s) 2111
SinI GGWCC 5 cut(s) 1709, 2132, 2505, 2594, 2684
SlaI CTCGAG 1 cut(s) 222
SmiMI CAYNNNNRTG 2 cut(s) 498, 1845
SmlI CTYRAG 2 cut(s) 222, 2223
SmoI CTYRAG 2 cut(s) 222, 2223
SpeI ACTAGT 2 cut(s) 1447, 2540
SspI AATATT 2 cut(s) 282, 1876
SspMI CTAG 8 cut(s) 845, 860, 1005, 1448, 1959, 1980, 2541, 2616
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 7 cut(s) 439, 663, 710, 1308, 1345, 2196, 2734
StyI CCWWGG 3 cut(s) 46, 981, 2313
TaiI ACGT 5 cut(s) 78, 129, 1282, 2244, 2707
TatI WGTACW 1 cut(s) 407
TauI GCSGC 3 cut(s) 108, 635, 2489
Tru1I TTAA 5 cut(s) 179, 677, 810, 1241, 1971
Tru9I TTAA 5 cut(s) 179, 677, 810, 1241, 1971
TscAI CASTG 1 cut(s) 2356
TspDTI ATGAA 8 cut(s) 249, 396, 911, 1477, 1601, 2462, 2598, 2613
TspGWI ACGGA 3 cut(s) 415, 469, 1980
TspRI CASTG 1 cut(s) 2356
Tth111I GACNNNGTC 1 cut(s) 2148
Van91I CCANNNNNTGG 4 cut(s) 1352, 2126, 2693, 2735
VneI GTGCAC 1 cut(s) 2115
VpaK11BI GGWCC 5 cut(s) 1709, 2132, 2505, 2594, 2684
VspI ATTAAT 1 cut(s) 1241
XagI CCTNNNNNAGG 3 cut(s) 1224, 1608, 2097
XapI RAATTY 6 cut(s) 384, 769, 882, 1034, 1111, 1655
XbaI TCTAGA 1 cut(s) 2615
XceI RCATGY 1 cut(s) 2326
XhoI CTCGAG 1 cut(s) 222
XmiI GTMKAC 2 cut(s) 1314, 2641
XspI CTAG 8 cut(s) 845, 860, 1005, 1448, 1959, 1980, 2541, 2616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.