RchiOBHm_Chr4g0407751

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000415
Physical Location & Seq
Forward (+)
30071306 .. 30072101
796 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37897

Sequence Viewer

Length: 675 bp
ATGGGAGGATTGTTGGCACATGAGATGATGCATGGATGGTTGAATCTTCAAGGTAAACAATGGGAATGGGAACGAAGCGTAAAAGAAGGTATTTGCCAAGTAATGTATTACAAATGGTTGCAATGGTTTTCTTCTAGAGGTTATAACTCTTCGCACAAAACCAATGAGCAAGTTCAACATACAAGAATGTTGAAAGAGTACTTGGCACAGAAGATTGAGTGTTGGAATGATGAAGTTTATGGTCAAGGATTCATAAATGCTATGCGTGCTATTGAAATAGTTGGATTCAAAACTACGGTGGATCATATCGTCAAAGATGGAACTCTCCCTGTGGTTCCACCGGTTGCCCCGGTTGTGATGGGGAAGAAGAAGAAGACCACCACCACCACCACTGAGTTAACGAGGAAGAAGACCACCTGTGCTCCAATAACTGAGCTGTTATGGAAGGCGACTAGCAGCACAACTAAATCATTATGGAAGGCCACAGCTGCAACAATTACCAACTTATTATGGAAGGTCACAGCCGCCTGTGAAACACCGCGATTTGTTACTATGGAAGGACACCGCCGCCACCAGTATCATCAGGGACAAAGCCATAACAACTTACATGTTCCCATGGCCGCATCTCCTACTCTCCTTCTTGTATTTATTGGGATATTAATCGAACACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

224

Amino Acids

25.62

Weight (kDa)

9.49

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 2 - 104 2.3e-21 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AccII CGCG 1 cut(s) 541
AciI CCGC 5 cut(s) 525, 539, 565, 568, 621
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 618
AfaI GTAC 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 607
AgeI ACCGGT 1 cut(s) 340
AgsI TTSAA 6 cut(s) 43, 50, 176, 193, 275, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 2 cut(s) 436, 488
AluI AGCT 2 cut(s) 436, 488
Alw21I GWGCWC 1 cut(s) 424
AlwI GGATC 1 cut(s) 309
AoxI GGCC 2 cut(s) 480, 618
ApeKI GCWGC 2 cut(s) 456, 488
AseI ATTAAT 1 cut(s) 659
AsiGI ACCGGT 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 380, 416
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 2 cut(s) 468, 475
BccI CCATC 3 cut(s) 30, 311, 352
BcnI CCSGG 1 cut(s) 350
BfaI CTAG 2 cut(s) 135, 453
BisI GCNGC 5 cut(s) 457, 489, 525, 568, 621
BlsI GCNGC 5 cut(s) 458, 490, 526, 569, 622
BmcAI AGTACT 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 2 cut(s) 18, 632
BpiI GAAGAC 2 cut(s) 380, 416
BpuMI CCSGG 1 cut(s) 350
BsaBI GATNNNNATC 1 cut(s) 659
BsaJI CCNNGG 2 cut(s) 348, 615
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 348, 615
BseGI GGATG 1 cut(s) 41
BseJI GATNNNNATC 1 cut(s) 659
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 384, 423
BseNI ACTGG 1 cut(s) 574
BseXI GCAGC 2 cut(s) 468, 475
Bsh1236I CGCG 1 cut(s) 541
BshFI GGCC 2 cut(s) 482, 620
BshTI ACCGGT 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 2 cut(s) 341, 350
BslFI GGGAC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 2 cut(s) 482, 620
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 1 cut(s) 301
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 5 cut(s) 525, 539, 565, 568, 621
BspANI GGCC 2 cut(s) 482, 620
BspCNI CTCAG 2 cut(s) 385, 424
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 1 cut(s) 574
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 348, 615
BssMI GATC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 615
Bst4CI ACNGT 1 cut(s) 298
Bst6I CTCTTC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 393, 432
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 541
BstKTI GATC 1 cut(s) 304
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 2 cut(s) 266, 488
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 1 cut(s) 348
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 2 cut(s) 468, 475
BstV2I GAAGAC 2 cut(s) 380, 416
BsuRI GGCC 2 cut(s) 482, 620
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 340
Csp6I GTAC 1 cut(s) 199
CspAI ACCGGT 1 cut(s) 340
CviAII CATG 4 cut(s) 20, 32, 608, 616
CviJI RGCY 6 cut(s) 436, 482, 488, 524, 594, 620
CviKI_1 RGCY 6 cut(s) 436, 482, 488, 524, 594, 620
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 2 cut(s) 393, 432
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 615
FaeI CATG 4 cut(s) 23, 35, 611, 619
FaqI GGGAC 1 cut(s) 600
FatI CATG 4 cut(s) 19, 31, 607, 615
Fnu4HI GCNGC 5 cut(s) 457, 489, 525, 568, 621
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 5 cut(s) 457, 489, 525, 568, 621
FspBI CTAG 2 cut(s) 135, 453
GluI GCNGC 5 cut(s) 457, 489, 525, 568, 621
HaeIII GGCC 2 cut(s) 482, 620
HapII CCGG 2 cut(s) 341, 350
Hin1II CATG 4 cut(s) 23, 35, 611, 619
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HinfI GANTC 3 cut(s) 43, 249, 285
HpaI GTTAAC 1 cut(s) 399
HpaII CCGG 2 cut(s) 341, 350
Hpy166II GTNNAC 2 cut(s) 56, 399
Hpy188III TCNNGA 1 cut(s) 135
Hpy8I GTNNAC 2 cut(s) 56, 399
HpyAV CCTTC 6 cut(s) 80, 439, 472, 508, 551, 647
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 31, 121, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 488
HpyF3I CTNAG 2 cut(s) 393, 432
Hsp92II CATG 4 cut(s) 23, 35, 611, 619
KspAI GTTAAC 1 cut(s) 399
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 7 cut(s) 342, 354, 363, 430, 541, 569, 587
Lsp1109I GCAGC 2 cut(s) 468, 475
LweI GCATC 2 cut(s) 18, 632
MaeI CTAG 2 cut(s) 135, 453
MaeIII GTNAC 2 cut(s) 517, 547
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 1 cut(s) 495
MmeI TCCRAC 2 cut(s) 203, 262
MnlI CCTC 2 cut(s) 131, 396
Mph1103I ATGCAT 1 cut(s) 33
MseI TTAA 2 cut(s) 398, 659
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 2 cut(s) 341, 350
MspR9I CCNGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 2 cut(s) 266, 488
NciI CCSGG 1 cut(s) 350
NcoI CCATGG 1 cut(s) 615
NdeII GATC 1 cut(s) 301
NlaIII CATG 4 cut(s) 23, 35, 611, 619
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 1 cut(s) 611
PciI ACATGT 1 cut(s) 607
PfeI GAWTC 3 cut(s) 43, 249, 285
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 5 cut(s) 458, 490, 526, 569, 622
PscI ACATGT 1 cut(s) 607
PshBI ATTAAT 1 cut(s) 659
PsiI TTATAA 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 398, 659
SatI GCNGC 5 cut(s) 457, 489, 525, 568, 621
Sau3AI GATC 1 cut(s) 301
ScaI AGTACT 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 424
SetI ASST 7 cut(s) 55, 91, 142, 419, 438, 490, 519
SfaNI GCATC 2 cut(s) 18, 632
Sse9I AATT 1 cut(s) 495
SsiI CCGC 5 cut(s) 525, 539, 565, 568, 621
SspMI CTAG 2 cut(s) 135, 453
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 663
TasI AATT 1 cut(s) 495
TatI WGTACW 1 cut(s) 198
TauI GCSGC 3 cut(s) 527, 570, 623
TfiI GAWTC 3 cut(s) 43, 249, 285
Tru1I TTAA 2 cut(s) 398, 659
Tru9I TTAA 2 cut(s) 398, 659
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 2 cut(s) 456, 488
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 2 cut(s) 241, 246
TspRI CASTG 1 cut(s) 397
VspI ATTAAT 1 cut(s) 659
XbaI TCTAGA 1 cut(s) 134
XceI RCATGY 1 cut(s) 611
XspI CTAG 2 cut(s) 135, 453
ZrmI AGTACT 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.