Rroxscaffold_3G00263620

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000415
Physical Location & Seq
Forward (+)
57519032 .. 57521671
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263620.1

Sequence Viewer

Length: 1074 bp
ATGTCGCAGATTAACGACTCTGAGGAAGTGAAGCATGATATTAGTTTGGCAAACGCTTCCGATCCATGGTGTAATACTTGCTTCAGATATGAGGAAGCTGGAGAAACAGGATGTCTGAACCTTGGTGATGGCCGACAACTTTGCTCTGATTGTTCTTCTATAGCGGTCACGAATTTAGAGGAATGCAATTTCATAATCCAAAAGGTGTTTGAATTCTACAGAATCTTAAATCTCAAAGTGGATGAAAAAATTCCCATCTTCTTCGTCGACAAGATTCAAATGAGCAGAATATCTCAAGGTGACATAGAAAAATATTCGGGAAGTGGAGGTGGTATTAAAAAGGTTGTGAAGCTCCCACTAGGAGAGGCAATTGTACTTTTGTTTGGAACACCAGGTATAGAAATGGGAGCAACCTTGGCACATGAGATGATGCATGGATGGTTCCGCCTTCAAGGTATGCCATGGGGATGTGAAAATTGGACTGAAGAAGGTATTTGCCAAGTAATGTCTTACAAATGGTTGCAGTGGTTTCCTTCCAGTGGTCTTGATACCTCTCACAAAACCAATCAGCAAGTTCAATATACAAGAAAGCTGAAAGAGTTCTTAGTAGAAGAACTTCGGTCTCGAGAAGAAGAAGTTTATGGCCAAGGATTCAGAGATGCTATGCAAGCTGTTGAAACATTTGGCTTTAAAACCACACTAGACCATGCCGTTAAAAATGGAACTCTACCACTTCCTACGATGGATAGTACACGCTCCACTGCCACAGCTGCCGCCGTCACCACTACCACCAAGAAGTTAATAAGAAAGAATACCAGTGCCACCCCAATAACTCGGTTATTATGGAAGGCGACCAGCAATACAACCAAATCATTGTGGAAGGCCACAGCTGCCGCAATAACTGACTTATTATGGAAGGCGGCCACCACCTACGAAACGCCGCGGTTTATTATTATGGAAAGTCACTGCCACAACCAATATCATCAAGGGCAAAGCCATAAAAACTTACAAGAAGGCATGTCCTTGTCCCCTATGCTCCTTGTATTTATTGGTATACTAATTGAACACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

357

Amino Acids

40.25

Weight (kDa)

6.38

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 122 - 237 3.5e-30 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 267, 1054
AccII CGCG 1 cut(s) 943
AciI CCGC 7 cut(s) 164, 445, 774, 894, 920, 941, 943
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 3 cut(s) 130, 643, 921
AcsI RAATTY 3 cut(s) 172, 212, 249
AcuI CTGAAG 2 cut(s) 67, 504
AfaI GTAC 2 cut(s) 375, 751
AfiI CCNNNNNNNGG 2 cut(s) 66, 539
AgsI TTSAA 6 cut(s) 212, 278, 452, 578, 677, 1064
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 6 cut(s) 98, 352, 592, 671, 770, 890
AluI AGCT 6 cut(s) 98, 352, 592, 671, 770, 890
Alw26I GTCTC 1 cut(s) 627
AlwI GGATC 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 4 cut(s) 130, 643, 882, 921
ApeKI GCWGC 2 cut(s) 770, 890
ApoI RAATTY 3 cut(s) 172, 212, 249
Asp700I GAANNNNTTC 3 cut(s) 249, 599, 615
AsuHPI GGTGA 3 cut(s) 137, 311, 772
AvaI CYCGRG 1 cut(s) 624
BalI TGGCCA 1 cut(s) 645
BarI GAAGNNNNNNTAC 2 cut(s) 600, 632
BbvI GCAGC 2 cut(s) 757, 877
BccI CCATC 4 cut(s) 122, 263, 432, 736
BceAI ACGGC 2 cut(s) 695, 761
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 1 cut(s) 627
BfaI CTAG 2 cut(s) 359, 701
BfmI CTRYAG 2 cut(s) 159, 217
BisI GCNGC 6 cut(s) 771, 774, 891, 894, 921, 941
BlsI GCNGC 6 cut(s) 772, 775, 892, 895, 922, 942
Bme1390I CCNGG 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 624
BmiI GGNNCC 1 cut(s) 443
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 2 cut(s) 420, 649
BpmI CTGGAG 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 627
BsaJI CCNNGG 6 cut(s) 65, 121, 414, 461, 646, 941
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 539
Bse1I ACTGG 2 cut(s) 537, 816
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 6 cut(s) 65, 121, 414, 461, 646, 941
BseGI GGATG 4 cut(s) 116, 247, 443, 473
BseLI CCNNNNNNNGG 2 cut(s) 66, 539
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 2 cut(s) 537, 816
BseXI GCAGC 2 cut(s) 757, 877
Bsh1236I CGCG 1 cut(s) 943
BshFI GGCC 4 cut(s) 132, 645, 884, 923
BsiHKCI CYCGRG 1 cut(s) 624
BslFI GGGAC 1 cut(s) 1012
BslI CCNNNNNNNGG 2 cut(s) 66, 539
BsmAI GTCTC 1 cut(s) 627
BsmFI GGGAC 1 cut(s) 1012
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 4 cut(s) 132, 645, 884, 923
Bso31I GGTCTC 1 cut(s) 627
BsoBI CYCGRG 1 cut(s) 624
Bsp143I GATC 1 cut(s) 61
Bsp19I CCATGG 2 cut(s) 65, 461
BspACI CCGC 7 cut(s) 164, 445, 774, 894, 920, 941, 943
BspANI GGCC 4 cut(s) 132, 645, 884, 923
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 1 cut(s) 943
BspLI GGNNCC 1 cut(s) 443
BspPI GGATC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 627
BsrI ACTGG 2 cut(s) 537, 816
BssECI CCNNGG 6 cut(s) 65, 121, 414, 461, 646, 941
BssMI GATC 1 cut(s) 61
BssNAI GTATAC 1 cut(s) 1055
BssT1I CCWWGG 5 cut(s) 65, 121, 414, 461, 646
Bst1107I GTATAC 1 cut(s) 1055
Bst2UI CCWGG 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 2 cut(s) 21, 604
BstDSI CCRYGG 3 cut(s) 65, 461, 941
BstF5I GGATG 4 cut(s) 116, 247, 443, 473
BstFNI CGCG 1 cut(s) 943
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 416, 668, 770, 890
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 1021
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 2 cut(s) 159, 217
BstUI CGCG 1 cut(s) 943
BstV1I GCAGC 2 cut(s) 757, 877
BstZ17I GTATAC 1 cut(s) 1055
BsuRI GGCC 4 cut(s) 132, 645, 884, 923
BtgI CCRYGG 3 cut(s) 65, 461, 941
BtsCI GGATG 4 cut(s) 116, 247, 443, 473
BtsI GCAGTG 3 cut(s) 530, 759, 964
BtsIMutI CAGTG 5 cut(s) 530, 544, 759, 823, 964
Cac8I GCNNGC 1 cut(s) 669
Cfr42I CCGCGG 1 cut(s) 944
CsiI ACCWGGT 1 cut(s) 391
Csp6I GTAC 2 cut(s) 374, 750
CviAII CATG 7 cut(s) 35, 66, 422, 434, 462, 707, 1018
CviQI GTAC 2 cut(s) 374, 750
DdeI CTNAG 2 cut(s) 21, 604
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DraI TTTAAA 1 cut(s) 691
EaeI YGGCCR 3 cut(s) 130, 643, 921
EciI GGCGGA 1 cut(s) 434
Eco130I CCWWGG 5 cut(s) 65, 121, 414, 461, 646
Eco31I GGTCTC 1 cut(s) 627
Eco57I CTGAAG 2 cut(s) 67, 504
Eco88I CYCGRG 1 cut(s) 624
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 5 cut(s) 65, 121, 414, 461, 646
EcoT22I ATGCAT 1 cut(s) 435
ErhI CCWWGG 5 cut(s) 65, 121, 414, 461, 646
FaeI CATG 7 cut(s) 38, 69, 425, 437, 465, 710, 1021
FaqI GGGAC 1 cut(s) 1012
FatI CATG 7 cut(s) 34, 65, 421, 433, 461, 706, 1017
FblI GTMKAC 2 cut(s) 267, 1054
Fnu4HI GCNGC 6 cut(s) 771, 774, 891, 894, 921, 941
FokI GGATG 4 cut(s) 123, 254, 450, 480
Fsp4HI GCNGC 6 cut(s) 771, 774, 891, 894, 921, 941
FspBI CTAG 2 cut(s) 359, 701
GluI GCNGC 6 cut(s) 771, 774, 891, 894, 921, 941
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 4 cut(s) 132, 645, 884, 923
Hin1II CATG 7 cut(s) 38, 69, 425, 437, 465, 710, 1021
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 4 cut(s) 17, 222, 274, 651
HphI GGTGA 3 cut(s) 137, 311, 772
Hpy166II GTNNAC 3 cut(s) 268, 752, 1055
Hpy188I TCNGA 6 cut(s) 22, 61, 86, 117, 148, 656
Hpy188III TCNNGA 5 cut(s) 169, 318, 545, 624, 626
Hpy8I GTNNAC 3 cut(s) 268, 752, 1055
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 7 cut(s) 458, 482, 543, 841, 874, 910, 1007
HpyCH4V TGCA 4 cut(s) 186, 433, 523, 667
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 668, 770, 890
HpyF3I CTNAG 2 cut(s) 21, 604
Hsp92II CATG 7 cut(s) 38, 69, 425, 437, 465, 710, 1021
KspI CCGCGG 1 cut(s) 944
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 4 cut(s) 357, 407, 761, 1041
LpnPI CCDG 8 cut(s) 84, 93, 378, 405, 550, 829, 868, 1054
Lsp1109I GCAGC 2 cut(s) 757, 877
LweI GCATC 2 cut(s) 420, 649
MabI ACCWGGT 1 cut(s) 391
MaeI CTAG 2 cut(s) 359, 701
MaeIII GTNAC 4 cut(s) 166, 299, 778, 962
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 7 cut(s) 147, 250, 253, 497, 623, 641, 644
MfeI CAATTG 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 7 cut(s) 172, 187, 212, 249, 369, 475, 1059
MluNI TGGCCA 1 cut(s) 645
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 6 cut(s) 16, 85, 172, 320, 358, 562
Mox20I TGGCCA 1 cut(s) 645
Mph1103I ATGCAT 1 cut(s) 435
MroXI GAANNNNTTC 3 cut(s) 249, 599, 615
MscI TGGCCA 1 cut(s) 645
MseI TTAA 6 cut(s) 12, 227, 336, 690, 714, 800
MslI CAYNNNNRTG 1 cut(s) 466
Msp20I TGGCCA 1 cut(s) 645
MspA1I CMGCKG 3 cut(s) 770, 890, 943
MspR9I CCNGG 1 cut(s) 393
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 1 cut(s) 393
MvnI CGCG 1 cut(s) 943
MwoI GCNNNNNNNGC 4 cut(s) 416, 668, 770, 890
NcoI CCATGG 2 cut(s) 65, 461
NdeII GATC 1 cut(s) 61
NlaIII CATG 7 cut(s) 38, 69, 425, 437, 465, 710, 1021
NlaIV GGNNCC 1 cut(s) 443
NmuCI GTSAC 4 cut(s) 166, 299, 778, 962
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 1 cut(s) 1021
PaeR7I CTCGAG 1 cut(s) 624
PctI GAATGC 1 cut(s) 188
PdmI GAANNNNTTC 3 cut(s) 249, 599, 615
PfeI GAWTC 3 cut(s) 222, 274, 651
PkrI GCNGC 6 cut(s) 772, 775, 892, 895, 922, 942
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 443
PvuII CAGCTG 2 cut(s) 770, 890
RsaI GTAC 2 cut(s) 375, 751
RsaNI GTAC 2 cut(s) 374, 750
RseI CAYNNNNRTG 1 cut(s) 466
SacII CCGCGG 1 cut(s) 944
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 6 cut(s) 12, 227, 336, 690, 714, 800
SatI GCNGC 6 cut(s) 771, 774, 891, 894, 921, 941
Sau3AI GATC 1 cut(s) 61
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 393
SexAI ACCWGGT 1 cut(s) 391
SfaNI GCATC 2 cut(s) 420, 649
SfcI CTRYAG 2 cut(s) 159, 217
Sfr274I CTCGAG 1 cut(s) 624
Sfr303I CCGCGG 1 cut(s) 944
SgrBI CCGCGG 1 cut(s) 944
SlaI CTCGAG 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 2 cut(s) 294, 624
SmoI CTYRAG 2 cut(s) 294, 624
Sse9I AATT 7 cut(s) 172, 187, 212, 249, 369, 475, 1059
SsiI CCGC 7 cut(s) 164, 445, 774, 894, 920, 941, 943
SspI AATATT 1 cut(s) 314
SspMI CTAG 2 cut(s) 359, 701
StyD4I CCNGG 1 cut(s) 391
StyI CCWWGG 5 cut(s) 65, 121, 414, 461, 646
TaqI TCGA 2 cut(s) 267, 625
TaqII GACCGA 1 cut(s) 609
TasI AATT 7 cut(s) 172, 187, 212, 249, 369, 475, 1059
TatI WGTACW 2 cut(s) 373, 749
TauI GCSGC 4 cut(s) 776, 896, 923, 943
TfiI GAWTC 3 cut(s) 222, 274, 651
Tru1I TTAA 6 cut(s) 12, 227, 336, 690, 714, 800
Tru9I TTAA 6 cut(s) 12, 227, 336, 690, 714, 800
TscAI CASTG 5 cut(s) 530, 544, 766, 823, 971
TseFI GTSAC 4 cut(s) 166, 299, 778, 962
TseI GCWGC 2 cut(s) 770, 890
Tsp45I GTSAC 4 cut(s) 166, 299, 778, 962
TspDTI ATGAA 2 cut(s) 181, 258
TspRI CASTG 5 cut(s) 530, 544, 766, 823, 971
XapI RAATTY 3 cut(s) 172, 212, 249
XceI RCATGY 1 cut(s) 1021
XhoI CTCGAG 1 cut(s) 624
XmiI GTMKAC 2 cut(s) 267, 1054
XmnI GAANNNNTTC 3 cut(s) 249, 599, 615
XspI CTAG 2 cut(s) 359, 701
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.