Rroxscaffold_7G00186010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000415
Physical Location & Seq
Forward (+)
25437300 .. 25440382
3083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186010.1

Sequence Viewer

Length: 294 bp
ATGGTTCACAACCCCAACACCAACGTTCCCAAAGCTACGAAGCTCAAGTGTCTTCTCTGCGACGCCATTTTCTCGACCTCAAACCCCTCCAGAACCGCCTCCGAGCACCTCAAGCACGCACGTAATTATGAAAAGTCCCAATATCCCAATAATTTTTACAGAAAGTTGAAAGAGCAATTAGCACAATTGTTGCAGAAGCGTGAAGATGAAGTTTATGGCCAAGGGTTCGAGATGCTCAAGGCCGTTGAAATGTTTGGCTTCGAAACCACACTACACTATATCATTGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.35

Weight (kDa)

8.91

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7963 PF25908 1 - 39 5.4e-16 Domain of unknown function (DUF7963)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AclI AACGTT 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 63
AgsI TTSAA 3 cut(s) 169, 248, 287
AluBI AGCT 2 cut(s) 35, 43
AluI AGCT 2 cut(s) 35, 43
Alw21I GWGCWC 1 cut(s) 108
AoxI GGCC 2 cut(s) 217, 240
AsuII TTCGAA 1 cut(s) 261
BalI TGGCCA 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 108
BceAI ACGGC 1 cut(s) 227
BmsI GCATC 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 261
BpuEI CTTGAG 3 cut(s) 29, 95, 221
BsaAI YACGTR 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 220
BshFI GGCC 2 cut(s) 219, 242
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 2 cut(s) 219, 242
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 108
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 219, 242
BspT104I TTCGAA 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 63
BstBAI YACGTR 1 cut(s) 122
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 2 cut(s) 219, 242
Cac8I GCNNGC 1 cut(s) 117
CseI GACGC 1 cut(s) 71
CviJI RGCY 5 cut(s) 35, 43, 219, 242, 258
CviKI_1 RGCY 5 cut(s) 35, 43, 219, 242, 258
EaeI YGGCCR 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaiI YATR 3 cut(s) 129, 216, 279
FaqI GGGAC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 2 cut(s) 219, 242
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 3 cut(s) 73, 90, 229
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 65
HpyCH4IV ACGT 2 cut(s) 24, 121
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpySE526I ACGT 2 cut(s) 24, 121
Hsp92I GRCGYC 1 cut(s) 63
LpnPI CCDG 1 cut(s) 103
LweI GCATC 1 cut(s) 222
MaeII ACGT 2 cut(s) 24, 121
MboII GAAGA 2 cut(s) 44, 215
MfeI CAATTG 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 108
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 4 cut(s) 124, 151, 176, 185
MluNI TGGCCA 1 cut(s) 219
MnlI CCTC 4 cut(s) 88, 97, 109, 119
Mox20I TGGCCA 1 cut(s) 219
MscI TGGCCA 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 219
MunI CAATTG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 112
NspV TTCGAA 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 122
Psp1406I AACGTT 1 cut(s) 24
SduI GDGCHC 1 cut(s) 108
SetI ASST 6 cut(s) 27, 37, 45, 80, 111, 124
SfaNI GCATC 1 cut(s) 222
SfuI TTCGAA 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 44, 110, 236
SmoI CTYRAG 3 cut(s) 44, 110, 236
Sse9I AATT 4 cut(s) 124, 151, 176, 185
SsiI CCGC 1 cut(s) 96
StyI CCWWGG 1 cut(s) 220
TaiI ACGT 2 cut(s) 27, 124
TaqI TCGA 3 cut(s) 74, 228, 261
TasI AATT 4 cut(s) 124, 151, 176, 185
TspDTI ATGAA 2 cut(s) 144, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.