Rmu_sc0001123.1_g000019

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001123.1
OG0000415
Physical Location & Seq
Reverse (-)
68655 .. 69224
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001123.1_g000019.1.cds

Sequence Viewer

Length: 570 bp
atgtcttacaaatggttgcagtggttttcttccagtggtcttgatacctcgcacaaaaccatacagcaagttcaatatacaagaaagctgaaagagttcttagtagaagaaattcggtgtcgagaagacgaagtttatggccaaggattcagagatgctatgcatgctgttgaaacatttggctttaaaaccacactagaccatgccgttaaaaatggaactctaccactacctatgatggatagtacacgctccaccgccacagctaccgccgtcaccactaccaccaagaagttaataagaaagaatactagtgccaccccaataactcggttattatggaaggcgaccagcaatacaaccaaatcattatggaaggccacagctgccgcaataactgacttattatggaaggcggccaccacctacgaaacgccgcggtttattattatggaaggtcactgccacaaccaatatcatcaagggcaaagccataaaaacttacaagaaggcatgtccttgtcccctatgctccttgtatttattggtatactaattgaacacaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

189

Amino Acids

21.54

Weight (kDa)

9.49

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 550
AccII CGCG 1 cut(s) 439
AciI CCGC 6 cut(s) 258, 270, 390, 416, 437, 439
AcoI YGGCCR 2 cut(s) 139, 417
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 3 cut(s) 74, 173, 560
AhlI ACTAGT 1 cut(s) 311
AluBI AGCT 3 cut(s) 88, 266, 386
AluI AGCT 3 cut(s) 88, 266, 386
AoxI GGCC 3 cut(s) 139, 378, 417
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 111
Asp700I GAANNNNTTC 2 cut(s) 95, 111
AsuHPI GGTGA 1 cut(s) 268
BalI TGGCCA 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 373
BccI CCATC 1 cut(s) 232
BceAI ACGGC 2 cut(s) 191, 257
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 2 cut(s) 197, 312
BisI GCNGC 4 cut(s) 387, 390, 417, 437
BlsI GCNGC 4 cut(s) 388, 391, 418, 438
BmsI GCATC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 142, 437
Bse1I ACTGG 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 142, 437
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 439
BshFI GGCC 3 cut(s) 141, 380, 419
BslFI GGGAC 1 cut(s) 508
BsmFI GGGAC 1 cut(s) 508
BsnI GGCC 3 cut(s) 141, 380, 419
BspACI CCGC 6 cut(s) 258, 270, 390, 416, 437, 439
BspANI GGCC 3 cut(s) 141, 380, 419
BspFNI CGCG 1 cut(s) 439
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 142, 437
BssNAI GTATAC 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 142
Bst1107I GTATAC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 100
BstDSI CCRYGG 1 cut(s) 437
BstFNI CGCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 2 cut(s) 164, 386
BstNSI RCATGY 2 cut(s) 167, 517
BstUI CGCG 1 cut(s) 439
BstV1I GCAGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 132
BstZ17I GTATAC 1 cut(s) 551
BsuRI GGCC 3 cut(s) 141, 380, 419
BtgI CCRYGG 1 cut(s) 437
BtsI GCAGTG 2 cut(s) 26, 460
BtsIMutI CAGTG 3 cut(s) 26, 40, 460
Cac8I GCNNGC 1 cut(s) 165
Cfr42I CCGCGG 1 cut(s) 440
Csp6I GTAC 1 cut(s) 246
CviAII CATG 3 cut(s) 164, 203, 514
CviJI RGCY 8 cut(s) 88, 141, 183, 266, 380, 386, 419, 492
CviKI_1 RGCY 8 cut(s) 88, 141, 183, 266, 380, 386, 419, 492
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 1 cut(s) 100
DraI TTTAAA 1 cut(s) 187
EaeI YGGCCR 2 cut(s) 139, 417
Eco130I CCWWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 142
EcoT22I ATGCAT 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 3 cut(s) 167, 206, 517
FaqI GGGAC 1 cut(s) 508
FatI CATG 3 cut(s) 163, 202, 513
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 4 cut(s) 387, 390, 417, 437
Fsp4HI GCNGC 4 cut(s) 387, 390, 417, 437
FspBI CTAG 2 cut(s) 197, 312
GluI GCNGC 4 cut(s) 387, 390, 417, 437
HaeIII GGCC 3 cut(s) 141, 380, 419
Hin1II CATG 3 cut(s) 167, 206, 517
HinfI GANTC 1 cut(s) 147
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 248, 551
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 2 cut(s) 41, 122
Hpy8I GTNNAC 2 cut(s) 248, 551
HpyAV CCTTC 5 cut(s) 337, 370, 406, 449, 503
HpyCH4V TGCA 2 cut(s) 19, 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 386
HpyF3I CTNAG 1 cut(s) 100
Hsp92II CATG 3 cut(s) 167, 206, 517
KspI CCGCGG 1 cut(s) 440
LmnI GCTCC 2 cut(s) 257, 537
LpnPI CCDG 3 cut(s) 46, 364, 550
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 1 cut(s) 145
MaeI CTAG 2 cut(s) 197, 312
MaeIII GTNAC 2 cut(s) 274, 458
MboII GAAGA 3 cut(s) 21, 119, 137
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 2 cut(s) 111, 555
MluNI TGGCCA 1 cut(s) 141
MnlI CCTC 1 cut(s) 58
Mox20I TGGCCA 1 cut(s) 141
Mph1103I ATGCAT 1 cut(s) 165
MroXI GAANNNNTTC 2 cut(s) 95, 111
MscI TGGCCA 1 cut(s) 141
MseI TTAA 3 cut(s) 186, 210, 296
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 2 cut(s) 386, 439
MvnI CGCG 1 cut(s) 439
MwoI GCNNNNNNNGC 2 cut(s) 164, 386
NlaIII CATG 3 cut(s) 167, 206, 517
NmuCI GTSAC 2 cut(s) 274, 458
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 2 cut(s) 167, 517
PaeI GCATGC 1 cut(s) 167
PdmI GAANNNNTTC 2 cut(s) 95, 111
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 4 cut(s) 388, 391, 418, 438
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SacII CCGCGG 1 cut(s) 440
SaqAI TTAA 3 cut(s) 186, 210, 296
SatI GCNGC 4 cut(s) 387, 390, 417, 437
SetI ASST 8 cut(s) 50, 90, 235, 268, 388, 428, 460, 569
SfaNI GCATC 1 cut(s) 145
Sfr303I CCGCGG 1 cut(s) 440
SgrBI CCGCGG 1 cut(s) 440
SpeI ACTAGT 1 cut(s) 311
SphI GCATGC 1 cut(s) 167
Sse9I AATT 2 cut(s) 111, 555
SsiI CCGC 6 cut(s) 258, 270, 390, 416, 437, 439
SspMI CTAG 2 cut(s) 197, 312
StyI CCWWGG 1 cut(s) 142
TaqI TCGA 1 cut(s) 121
TasI AATT 2 cut(s) 111, 555
TatI WGTACW 1 cut(s) 245
TauI GCSGC 3 cut(s) 392, 419, 439
TfiI GAWTC 1 cut(s) 147
Tru1I TTAA 3 cut(s) 186, 210, 296
Tru9I TTAA 3 cut(s) 186, 210, 296
TscAI CASTG 3 cut(s) 26, 40, 467
TseFI GTSAC 2 cut(s) 274, 458
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 2 cut(s) 274, 458
TspRI CASTG 3 cut(s) 26, 40, 467
XapI RAATTY 1 cut(s) 111
XceI RCATGY 2 cut(s) 167, 517
XmiI GTMKAC 1 cut(s) 550
XmnI GAANNNNTTC 2 cut(s) 95, 111
XspI CTAG 2 cut(s) 197, 312
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.