RLG00000012797

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000415
Physical Location & Seq
Forward (+)
22460190 .. 22463392
3203 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012797

Sequence Viewer

Length: 1071 bp
ATGTCTGACATTAATACCTGTGATGTTTGCAACAAGAAGTCTGCAAGTATTCACAACGCCATCATGCCGGCAACCTCCACCTCCTTATTCGCCGTCATCTCTCTCACTCCACTGTTGTTCGTCGAGTGGGAGGACTGCCGGCTGGACTGGTGCGTACATGTCGACCATTCTGGGATCAAAGATGCTGTCGGGAACATCTCTCCGATGGAAGCTGGAGAAACAGAATATTTGAACCTTGGTGATGGACGATATCTTTGCTCATATTGCTCTTCTATAGCGGTCTTGAATCGAGAGGAATGCAATGCCATTATTGAAAATGTGTTCAAGTTCTACAGAAGTTTAAATCTCAGAATAGACAAAAGCATTCCTATTCTATTCGCCGACAAGAATGAGATGCGCAGAATTAATACATGTAAAGAAGATGCTGATGGTTTATATTTCTCAAGAGGTTATAAGAACATGTCTATTTTAACTATTGAATGTTTGAAAACTGAAGGAAATATTGAAGTGTTGACGAAAGTCCCAAAGCTCTTAGAAGGAGTCACAATTGTAGTTTTGTTCGGAAAACCAAATGTGGAAATCGGTGGGATCTTGGCACATGAGATTATGCATGCATGGTTACGCGGTCGCGGTAAGCCATGGGAATGGGAAAGAAGAGTTGAAGAAGGCATTTGCGAAGTAATGTATTACAAGTGGTTGAAATGGTTTGGTTCTAGTACTGGATTTCATTCTTCTTACAAAACCAAAGATCATGCTCAATACGCAAGAAAGTTGATAAAGTACTTGGCACAAGGGATTGAGACGCGGGAAGACGAAGCTTATGGCCAACGGTTCAGAGATGCTATGCTAACGGTGACAAAATTAGGCTTGAAAACTACACTGAACTATACCCTTAAAAATGGAACTCTTCCTGTAGATCCACCGAAAACCAAGCTATTGTGGAAGGCCACCACTAGTGGTGCTACATTGTTATTGAAGGCCACTGCCACCACCATAACTGATTTATTATGGAAGTCCACCGGCCGCTGTTATGGAAGGCCATCGCCGCCACAACTAGGGCCAAAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

357

Amino Acids

40.2

Weight (kDa)

8.63

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 114 - 295 5.6e-30 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 453
Acc16I TGCGCA 1 cut(s) 398
AccI GTMKAC 1 cut(s) 162
AccII CGCG 3 cut(s) 624, 630, 805
AciI CCGC 6 cut(s) 278, 624, 630, 805, 1024, 1046
AclWI GGATC 3 cut(s) 182, 596, 911
AcoI YGGCCR 2 cut(s) 823, 1021
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 3 cut(s) 156, 718, 782
AfiI CCNNNNNNNGG 1 cut(s) 1055
AflIII ACRYGT 3 cut(s) 157, 410, 459
AhlI ACTAGT 1 cut(s) 953
AluBI AGCT 4 cut(s) 212, 529, 818, 934
AluI AGCT 4 cut(s) 212, 529, 818, 934
Alw26I GTCTC 1 cut(s) 794
AlwI GGATC 3 cut(s) 182, 596, 911
AoxI GGCC 6 cut(s) 823, 945, 978, 1021, 1037, 1058
ArsI GACNNNNNNTTYG 4 cut(s) 171, 203, 237, 269
AseI ATTAAT 2 cut(s) 12, 405
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 1058
AsuHPI GGTGA 2 cut(s) 251, 865
BalI TGGCCA 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 816
BccI CCATC 5 cut(s) 68, 199, 236, 422, 1048
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 4 cut(s) 237, 271, 279, 313
BcoDI GTCTC 1 cut(s) 794
BcuI ACTAGT 1 cut(s) 953
BfaI CTAG 3 cut(s) 714, 954, 1055
BfmI CTRYAG 3 cut(s) 273, 331, 912
BisI GCNGC 2 cut(s) 1024, 1046
BlsI GCNGC 2 cut(s) 1025, 1047
BmcAI AGTACT 2 cut(s) 718, 782
BmgT120I GGNCC 1 cut(s) 1058
BmsI GCATC 4 cut(s) 172, 384, 412, 829
BoxI GACNNNNGTC 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 816
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 427
BsaJI CCNNGG 2 cut(s) 235, 638
Bsc4I CCNNNNNNNGG 1 cut(s) 1055
Bse118I RCCGGY 3 cut(s) 67, 138, 1019
Bse1I ACTGG 2 cut(s) 152, 724
Bse3DI GCAATG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 235, 638
BseLI CCNNNNNNNGG 1 cut(s) 1055
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 361
BseNI ACTGG 2 cut(s) 152, 724
BseX3I CGGCCG 1 cut(s) 1021
Bsh1236I CGCG 3 cut(s) 624, 630, 805
Bsh1285I CGRYCG 2 cut(s) 628, 1024
BshFI GGCC 6 cut(s) 825, 947, 980, 1023, 1039, 1060
BsiEI CGRYCG 2 cut(s) 628, 1024
BsiSI CCGG 3 cut(s) 68, 139, 1020
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 1055
BsmAI GTCTC 1 cut(s) 794
BsmBI CGTCTC 1 cut(s) 794
BsmFI GGGAC 1 cut(s) 506
BsmI GAATGC 2 cut(s) 302, 363
BsnI GGCC 6 cut(s) 825, 947, 980, 1023, 1039, 1060
Bsp143I GATC 4 cut(s) 174, 588, 748, 916
Bsp19I CCATGG 1 cut(s) 638
BspACI CCGC 6 cut(s) 278, 624, 630, 805, 1024, 1046
BspANI GGCC 6 cut(s) 825, 947, 980, 1023, 1039, 1060
BspCNI CTCAG 1 cut(s) 360
BspFNI CGCG 3 cut(s) 624, 630, 805
BspPI GGATC 3 cut(s) 182, 596, 911
BspQI GCTCTTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 3 cut(s) 67, 138, 1019
BsrI ACTGG 2 cut(s) 152, 724
BssAI RCCGGY 3 cut(s) 67, 138, 1019
BssECI CCNNGG 2 cut(s) 235, 638
BssMI GATC 4 cut(s) 174, 588, 748, 916
BssT1I CCWWGG 2 cut(s) 235, 638
Bst4CI ACNGT 3 cut(s) 114, 831, 853
Bst6I CTCTTC 3 cut(s) 274, 649, 912
BstC8I GCNNGC 3 cut(s) 69, 140, 612
BstDEI CTNAG 2 cut(s) 347, 532
BstDSI CCRYGG 1 cut(s) 638
BstFNI CGCG 3 cut(s) 624, 630, 805
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 4 cut(s) 177, 591, 751, 919
BstMAI GTCTC 1 cut(s) 794
BstMBI GATC 4 cut(s) 174, 588, 748, 916
BstMCI CGRYCG 2 cut(s) 628, 1024
BstMWI GCNNNNNNNGC 3 cut(s) 264, 761, 1045
BstNSI RCATGY 4 cut(s) 161, 414, 463, 614
BstPAI GACNNNNGTC 1 cut(s) 518
BstSFI CTRYAG 3 cut(s) 273, 331, 912
BstUI CGCG 3 cut(s) 624, 630, 805
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 2 cut(s) 588, 916
BstXI CCANNNNNNTGG 1 cut(s) 645
BstYI RGATCY 2 cut(s) 588, 916
BstZI CGGCCG 1 cut(s) 1021
BsuRI GGCC 6 cut(s) 825, 947, 980, 1023, 1039, 1060
BtgI CCRYGG 1 cut(s) 638
BtgZI GCGATG 1 cut(s) 1026
BtsI GCAGTG 1 cut(s) 981
BtsIMutI CAGTG 3 cut(s) 110, 878, 981
Cac8I GCNNGC 3 cut(s) 69, 140, 612
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 3 cut(s) 67, 138, 1019
Cfr13I GGNCC 1 cut(s) 1058
CseI GACGC 1 cut(s) 811
Csp6I GTAC 3 cut(s) 155, 717, 781
CviAII CATG 9 cut(s) 64, 158, 411, 460, 599, 611, 615, 639, 752
CviQI GTAC 3 cut(s) 155, 717, 781
DdeI CTNAG 2 cut(s) 347, 532
DpnI GATC 4 cut(s) 176, 590, 750, 918
DpnII GATC 4 cut(s) 174, 588, 748, 916
DraI TTTAAA 1 cut(s) 342
EaeI YGGCCR 2 cut(s) 823, 1021
EagI CGGCCG 1 cut(s) 1021
Eam1104I CTCTTC 3 cut(s) 274, 649, 912
EarI CTCTTC 3 cut(s) 274, 649, 912
EclXI CGGCCG 1 cut(s) 1021
Eco130I CCWWGG 2 cut(s) 235, 638
Eco32I GATATC 1 cut(s) 251
Eco52I CGGCCG 1 cut(s) 1021
Eco57I CTGAAG 1 cut(s) 513
EcoRV GATATC 1 cut(s) 251
EcoT14I CCWWGG 2 cut(s) 235, 638
EcoT22I ATGCAT 2 cut(s) 612, 616
ErhI CCWWGG 2 cut(s) 235, 638
Esp3I CGTCTC 1 cut(s) 794
FaeI CATG 9 cut(s) 67, 161, 414, 463, 602, 614, 618, 642, 755
FaqI GGGAC 1 cut(s) 506
FatI CATG 9 cut(s) 63, 157, 410, 459, 598, 610, 614, 638, 751
FauI CCCGC 1 cut(s) 798
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 1024, 1046
Fsp4HI GCNGC 2 cut(s) 1024, 1046
FspBI CTAG 3 cut(s) 714, 954, 1055
FspI TGCGCA 1 cut(s) 398
GlaI GCGC 1 cut(s) 398
GluI GCNGC 2 cut(s) 1024, 1046
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 6 cut(s) 825, 947, 980, 1023, 1039, 1060
HapII CCGG 3 cut(s) 68, 139, 1020
HgaI GACGC 1 cut(s) 811
HhaI GCGC 1 cut(s) 399
Hin1II CATG 9 cut(s) 67, 161, 414, 463, 602, 614, 618, 642, 755
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 2 cut(s) 163, 513
HindII GTYRAC 2 cut(s) 163, 513
HindIII AAGCTT 1 cut(s) 816
HinfI GANTC 2 cut(s) 286, 540
HpaII CCGG 3 cut(s) 68, 139, 1020
HphI GGTGA 2 cut(s) 251, 865
Hpy166II GTNNAC 3 cut(s) 163, 513, 1017
Hpy188I TCNGA 5 cut(s) 7, 204, 350, 563, 836
Hpy188III TCNNGA 4 cut(s) 190, 283, 290, 444
Hpy8I GTNNAC 3 cut(s) 163, 513, 1017
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 6 cut(s) 488, 530, 659, 937, 970, 1029
HpyCH4III ACNGT 3 cut(s) 114, 831, 853
HpyCH4V TGCA 5 cut(s) 30, 44, 300, 610, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 264, 761, 1045
HpyF3I CTNAG 2 cut(s) 347, 532
Hsp92II CATG 9 cut(s) 67, 161, 414, 463, 602, 614, 618, 642, 755
HspAI GCGC 1 cut(s) 397
KroI GCCGGC 2 cut(s) 67, 138
KroNI GCCGGC 2 cut(s) 69, 140
Kzo9I GATC 4 cut(s) 174, 588, 748, 916
LguI GCTCTTC 1 cut(s) 274
LweI GCATC 4 cut(s) 172, 384, 412, 829
MaeI CTAG 3 cut(s) 714, 954, 1055
MaeIII GTNAC 3 cut(s) 541, 618, 853
MalI GATC 4 cut(s) 176, 590, 750, 918
MboI GATC 4 cut(s) 174, 588, 748, 916
MboII GAAGA 7 cut(s) 261, 431, 666, 674, 723, 821, 899
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 2 cut(s) 588, 916
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 3 cut(s) 402, 546, 860
MluNI TGGCCA 1 cut(s) 825
MlyI GAGTC 1 cut(s) 549
MnlI CCTC 5 cut(s) 85, 91, 124, 286, 440
Mox20I TGGCCA 1 cut(s) 825
Mph1103I ATGCAT 2 cut(s) 612, 616
MroNI GCCGGC 2 cut(s) 67, 138
MscI TGGCCA 1 cut(s) 825
MseI TTAA 5 cut(s) 12, 341, 405, 470, 894
MslI CAYNNNNRTG 1 cut(s) 643
Msp20I TGGCCA 1 cut(s) 825
MspA1I CMGCKG 1 cut(s) 1026
MspI CCGG 3 cut(s) 68, 139, 1020
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 2 cut(s) 302, 363
MvnI CGCG 3 cut(s) 624, 630, 805
MwoI GCNNNNNNNGC 3 cut(s) 264, 761, 1045
NaeI GCCGGC 2 cut(s) 69, 140
NcoI CCATGG 1 cut(s) 638
NdeII GATC 4 cut(s) 174, 588, 748, 916
NgoMIV GCCGGC 2 cut(s) 67, 138
NlaIII CATG 9 cut(s) 67, 161, 414, 463, 602, 614, 618, 642, 755
NmuCI GTSAC 2 cut(s) 541, 853
NsbI TGCGCA 1 cut(s) 398
NsiI ATGCAT 2 cut(s) 612, 616
NspI RCATGY 4 cut(s) 161, 414, 463, 614
PaeI GCATGC 1 cut(s) 614
PciI ACATGT 3 cut(s) 157, 410, 459
PciSI GCTCTTC 1 cut(s) 274
PctI GAATGC 2 cut(s) 302, 363
PdiI GCCGGC 2 cut(s) 69, 140
PfeI GAWTC 1 cut(s) 286
PkrI GCNGC 2 cut(s) 1025, 1047
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
PscI ACATGT 3 cut(s) 157, 410, 459
PshAI GACNNNNGTC 1 cut(s) 518
PshBI ATTAAT 2 cut(s) 12, 405
PsiI TTATAA 1 cut(s) 453
PspPI GGNCC 1 cut(s) 1058
PsuI RGATCY 2 cut(s) 588, 916
RsaI GTAC 3 cut(s) 156, 718, 782
RsaNI GTAC 3 cut(s) 155, 717, 781
RseI CAYNNNNRTG 1 cut(s) 643
SalI GTCGAC 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 5 cut(s) 12, 341, 405, 470, 894
SatI GCNGC 2 cut(s) 1024, 1046
Sau3AI GATC 4 cut(s) 174, 588, 748, 916
Sau96I GGNCC 1 cut(s) 1058
ScaI AGTACT 2 cut(s) 718, 782
SchI GAGTC 1 cut(s) 549
SetI ASST 9 cut(s) 20, 77, 83, 214, 237, 451, 531, 820, 936
SfaNI GCATC 4 cut(s) 172, 384, 412, 829
SfcI CTRYAG 3 cut(s) 273, 331, 912
SmiMI CAYNNNNRTG 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
SpeI ACTAGT 1 cut(s) 953
SphI GCATGC 1 cut(s) 614
Sse9I AATT 3 cut(s) 402, 546, 860
SsiI CCGC 6 cut(s) 278, 624, 630, 805, 1024, 1046
SspI AATATT 2 cut(s) 227, 502
SspMI CTAG 3 cut(s) 714, 954, 1055
StyI CCWWGG 2 cut(s) 235, 638
TaaI ACNGT 3 cut(s) 114, 831, 853
TaqI TCGA 3 cut(s) 123, 162, 289
TasI AATT 3 cut(s) 402, 546, 860
TatI WGTACW 2 cut(s) 716, 780
TauI GCSGC 2 cut(s) 1026, 1048
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 5 cut(s) 12, 341, 405, 470, 894
Tru9I TTAA 5 cut(s) 12, 341, 405, 470, 894
TscAI CASTG 3 cut(s) 117, 885, 988
TseFI GTSAC 2 cut(s) 541, 853
Tsp45I GTSAC 2 cut(s) 541, 853
TspDTI ATGAA 1 cut(s) 716
TspRI CASTG 3 cut(s) 117, 885, 988
VspI ATTAAT 2 cut(s) 12, 405
XceI RCATGY 4 cut(s) 161, 414, 463, 614
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 3 cut(s) 714, 954, 1055
ZrmI AGTACT 2 cut(s) 718, 782
Zsp2I ATGCAT 2 cut(s) 612, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.