Rh6AG262900

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000415
Physical Location & Seq
Reverse (-)
45425927 .. 45435509
9583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG262900.1

Sequence Viewer

Length: 918 bp
ATGTGTGGTGTAGGAATAGTGAAGACGGCTTCATCAATCTCGCTTCTCATTCTCCTTCTCACATTCGCAATCACCATGGCCGACTCTTCTTCTTTTTCTCTCCGCGCTGCTTCTCGATCATTATGCCCTTCTGGTTCTGGTGTGGGGACACCGAGATCTCTATCCCCAACCGCCTTATCAATCGCCGTCCATTCCTCGTCCGGCGGAGATGGTGGTGAACTCAGCATCTTCGAGGCTGACGGTGATAATTCAGCAAACCCTGTAGAAAGCTCCCCGACCAAATACGAAAAAGACACGATTACTGACATGACTAATTCCAATAGCTGCGGTGCCAATTTCAACAATCCAGGATGCAAAGACAGCATGAATATTTGTTACGTTCGCAAAAAACATTCTAACTCATTGGCTCATGATAAATTTTGGGACCAAAGATGCTGTTCTGGACATTACTTTGACGGAACTCTGAATTGTATCACTTGTCATAAATTTAAGCAAGCCGGGGAGATAGAATACTTGAACCTTGGTCGTGGTCTAATGACTTGTTCAAAATGCTGTTCTATTGCTATTAAGAATTCAGAAGAATTCAAGCCAATTATTGAAAATGTGCATAATTTTTATGACAGCTTAAATCTGAAGGTTGATCGAGACATCCCTATTTTGTTGGTCGATGGTAATGAGATGTTCGGATCTAAACAAGGCAGCATCCATCTCGGTTTTACTTGCTATTGTATCGAAAGGGGAAAATTTTCAGAAGATTTAACCATGTTGCAAGATTTAGCAACATGTCTCTCGGGCAAATTGAGAATTTCAGTTTTGTCTGGACTACCAGAGTACGGATCCGTATTTGTTTTTTTTTTTTCCTCCTTTTCTGATAACTTTTCTCCATTATTATTGTTCATCAATTTCTTTTTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

305

Amino Acids

33.19

Weight (kDa)

5.8

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 1 cut(s) 105
AciI CCGC 4 cut(s) 103, 171, 204, 327
AclWI GGATC 3 cut(s) 694, 831, 844
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 6 cut(s) 416, 485, 571, 581, 743, 804
AcuI CTGAAG 1 cut(s) 653
AfaI GTAC 1 cut(s) 833
AfiI CCNNNNNNNGG 1 cut(s) 833
AflIII ACRYGT 1 cut(s) 782
AgsI TTSAA 5 cut(s) 340, 517, 546, 586, 599
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 3 cut(s) 270, 324, 624
AluI AGCT 3 cut(s) 270, 324, 624
Alw26I GTCTC 2 cut(s) 639, 791
AlwI GGATC 3 cut(s) 694, 831, 844
Ama87I CYCGRG 1 cut(s) 790
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 107, 324, 699
ApoI RAATTY 6 cut(s) 416, 485, 571, 581, 743, 804
Asp700I GAANNNNTTC 1 cut(s) 745
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 424
AsuC2I CCSGG 1 cut(s) 499
AsuHPI GGTGA 3 cut(s) 64, 227, 254
AvaI CYCGRG 1 cut(s) 790
AvaII GGWCC 1 cut(s) 424
BamHI GGATCC 1 cut(s) 836
BanI GGYRCC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 3 cut(s) 94, 311, 711
BccI CCATC 3 cut(s) 203, 662, 714
BceAI ACGGC 2 cut(s) 42, 170
BcgI CGANNNNNNTGC 4 cut(s) 105, 139, 691, 725
BciT130I CCWGG 1 cut(s) 348
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 639, 791
BfmI CTRYAG 1 cut(s) 261
BglII AGATCT 1 cut(s) 155
BisI GCNGC 3 cut(s) 108, 325, 700
BlsI GCNGC 3 cut(s) 109, 326, 701
Bme1390I CCNGG 2 cut(s) 348, 499
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 790
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 3 cut(s) 331, 425, 838
BmrFI CCNGG 2 cut(s) 348, 499
BmsI GCATC 4 cut(s) 234, 341, 422, 711
BpiI GAAGAC 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 499
BsaBI GATNNNNATC 1 cut(s) 160
BsaJI CCNNGG 3 cut(s) 75, 498, 520
Bsc4I CCNNNNNNNGG 1 cut(s) 833
Bse8I GATNNNNATC 1 cut(s) 160
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 75, 498, 520
BseGI GGATG 3 cut(s) 356, 648, 702
BseJI GATNNNNATC 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 833
BseMII CTCAG 1 cut(s) 235
BseXI GCAGC 3 cut(s) 94, 311, 711
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 790
BsiSI CCGG 2 cut(s) 201, 498
BslFI GGGAC 2 cut(s) 160, 437
BslI CCNNNNNNNGG 1 cut(s) 833
BsmAI GTCTC 2 cut(s) 639, 791
BsmFI GGGAC 2 cut(s) 160, 437
BsnI GGCC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 790
Bsp143I GATC 5 cut(s) 116, 155, 640, 686, 836
Bsp19I CCATGG 1 cut(s) 75
BspACI CCGC 4 cut(s) 103, 171, 204, 327
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 1 cut(s) 105
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 331, 425, 838
BspPI GGATC 3 cut(s) 694, 831, 844
BspT107I GGYRCC 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 75, 498, 520
BssMI GATC 5 cut(s) 116, 155, 640, 686, 836
BssT1I CCWWGG 2 cut(s) 75, 520
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 3 cut(s) 356, 648, 702
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 5 cut(s) 119, 158, 643, 689, 839
BstMAI GTCTC 2 cut(s) 639, 791
BstMBI GATC 5 cut(s) 116, 155, 640, 686, 836
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 786
BstSCI CCNGG 2 cut(s) 346, 497
BstSFI CTRYAG 1 cut(s) 261
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 94, 311, 711
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 3 cut(s) 155, 686, 836
BstYI RGATCY 3 cut(s) 155, 686, 836
BsuRI GGCC 1 cut(s) 80
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 3 cut(s) 356, 648, 702
Cac8I GCNNGC 1 cut(s) 495
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 424
Csp6I GTAC 1 cut(s) 832
CviAII CATG 6 cut(s) 76, 307, 364, 410, 763, 783
CviJI RGCY 9 cut(s) 29, 80, 236, 270, 324, 407, 497, 589, 624
CviKI_1 RGCY 9 cut(s) 29, 80, 236, 270, 324, 407, 497, 589, 624
CviQI GTAC 1 cut(s) 832
DdeI CTNAG 1 cut(s) 221
DpnI GATC 5 cut(s) 118, 157, 642, 688, 838
DpnII GATC 5 cut(s) 116, 155, 640, 686, 836
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 75, 520
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 653
Eco88I CYCGRG 1 cut(s) 790
EcoRI GAATTC 2 cut(s) 571, 581
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 75, 520
ErhI CCWWGG 2 cut(s) 75, 520
FaeI CATG 6 cut(s) 79, 310, 367, 413, 766, 786
FaqI GGGAC 2 cut(s) 160, 437
FatI CATG 6 cut(s) 75, 306, 363, 409, 762, 782
Fnu4HI GCNGC 3 cut(s) 108, 325, 700
FokI GGATG 3 cut(s) 363, 635, 689
Fsp4HI GCNGC 3 cut(s) 108, 325, 700
GlaI GCGC 1 cut(s) 106
GluI GCNGC 3 cut(s) 108, 325, 700
HaeIII GGCC 1 cut(s) 80
HapII CCGG 2 cut(s) 201, 498
HhaI GCGC 1 cut(s) 107
Hin1II CATG 6 cut(s) 79, 310, 367, 413, 766, 786
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 201, 498
HphI GGTGA 3 cut(s) 64, 227, 254
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 6 cut(s) 465, 577, 633, 686, 751, 871
Hpy188III TCNNGA 5 cut(s) 114, 410, 441, 644, 819
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 65, 138, 628
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 3 cut(s) 354, 607, 769
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 6 cut(s) 79, 310, 367, 413, 766, 786
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 5 cut(s) 116, 155, 640, 686, 836
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 3 cut(s) 94, 311, 711
LweI GCATC 4 cut(s) 234, 341, 422, 711
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 374
MalI GATC 5 cut(s) 118, 157, 642, 688, 838
MboI GATC 5 cut(s) 116, 155, 640, 686, 836
MboII GAAGA 6 cut(s) 34, 78, 81, 220, 590, 764
MflI RGATCY 3 cut(s) 155, 686, 836
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 3 cut(s) 205, 226, 871
MroXI GAANNNNTTC 1 cut(s) 745
MseI TTAA 4 cut(s) 489, 567, 626, 758
MspI CCGG 2 cut(s) 201, 498
MspR9I CCNGG 2 cut(s) 348, 499
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 360
NciI CCSGG 1 cut(s) 499
NcoI CCATGG 1 cut(s) 75
NdeII GATC 5 cut(s) 116, 155, 640, 686, 836
NlaIII CATG 6 cut(s) 79, 310, 367, 413, 766, 786
NlaIV GGNNCC 3 cut(s) 331, 425, 838
NspI RCATGY 1 cut(s) 786
PagI TCATGA 1 cut(s) 409
PciI ACATGT 1 cut(s) 782
PdmI GAANNNNTTC 1 cut(s) 745
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 3 cut(s) 109, 326, 701
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PscI ACATGT 1 cut(s) 782
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 3 cut(s) 331, 425, 838
PspPI GGNCC 1 cut(s) 424
PsuI RGATCY 3 cut(s) 155, 686, 836
RsaI GTAC 1 cut(s) 833
RsaNI GTAC 1 cut(s) 832
SaqAI TTAA 4 cut(s) 489, 567, 626, 758
SatI GCNGC 3 cut(s) 108, 325, 700
Sau3AI GATC 5 cut(s) 116, 155, 640, 686, 836
Sau96I GGNCC 1 cut(s) 424
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 348, 499
SetI ASST 6 cut(s) 272, 326, 381, 522, 626, 639
SfaNI GCATC 4 cut(s) 234, 341, 422, 711
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 424
SsiI CCGC 4 cut(s) 103, 171, 204, 327
SspI AATATT 1 cut(s) 370
StyD4I CCNGG 2 cut(s) 346, 497
StyI CCWWGG 2 cut(s) 75, 520
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 1 cut(s) 381
TaqI TCGA 5 cut(s) 115, 231, 643, 666, 732
Tru1I TTAA 4 cut(s) 489, 567, 626, 758
Tru9I TTAA 4 cut(s) 489, 567, 626, 758
TseI GCWGC 3 cut(s) 107, 324, 699
TspDTI ATGAA 3 cut(s) 21, 380, 886
TspGWI ACGGA 3 cut(s) 471, 829, 849
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 6 cut(s) 416, 485, 571, 581, 743, 804
XceI RCATGY 1 cut(s) 786
XmnI GAANNNNTTC 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.