RLG00000012866

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000415
Physical Location & Seq
Forward (+)
23313212 .. 23313832
621 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012866

Sequence Viewer

Length: 348 bp
ATGAAGTACAAGTGGATGGAATGGTTTTGTTCTAGTAGTGATTTTGACTCTTGGTACAAAACCAATGAGCAAGCTCAATACGCAAGAAAGTTGAAAGAGTATCAAGTCCAAGTGATGGAGAGGTGGGTAGATAAAGTTTATGGCCAAGGGTTCAGAGATGCTATGAAGGCTGTAGAAATGTTTGGCTTCGAAACCACGCTGCACTACATCGTTGAAAAAGGAAAATTCCCTCGCAGTCAACCACCTCCTGTCCCGATTCCTAGGACACCTAGGGATGAAAGATGGAAGGGGGCTGTATGCGCTGTAGCTCATATAGCTCTTATTTTTCTTTTAATGAAGGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

116

Amino Acids

13.73

Weight (kDa)

9.42

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 17 - 71 4.1e-08 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 2 cut(s) 8, 56
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 2 cut(s) 94, 215
AluBI AGCT 3 cut(s) 74, 308, 317
AluI AGCT 3 cut(s) 74, 308, 317
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 224
AspA2I CCTAGG 2 cut(s) 260, 269
AspLEI GCGC 1 cut(s) 302
AsuII TTCGAA 1 cut(s) 189
AvrII CCTAGG 2 cut(s) 260, 269
BalI TGGCCA 1 cut(s) 144
BbvI GCAGC 1 cut(s) 186
BccI CCATC 3 cut(s) 10, 109, 276
BfaI CTAG 4 cut(s) 33, 261, 270, 342
BfmI CTRYAG 2 cut(s) 171, 303
BisI GCNGC 1 cut(s) 200
BlnI CCTAGG 2 cut(s) 260, 269
BlsI GCNGC 1 cut(s) 201
BmsI GCATC 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 189
BsaJI CCNNGG 3 cut(s) 145, 260, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 115
BseDI CCNNGG 3 cut(s) 145, 260, 269
BseGI GGATG 2 cut(s) 21, 280
BseLI CCNNNNNNNGG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 189
BspANI GGCC 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 189
BssECI CCNNGG 3 cut(s) 145, 260, 269
BssT1I CCWWGG 3 cut(s) 145, 260, 269
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 72
BstF5I GGATG 2 cut(s) 21, 280
BstHHI GCGC 1 cut(s) 302
BstMWI GCNNNNNNNGC 4 cut(s) 80, 167, 299, 314
BstSFI CTRYAG 2 cut(s) 171, 303
BstV1I GCAGC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 2 cut(s) 21, 280
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 302
Csp6I GTAC 2 cut(s) 7, 55
CviJI RGCY 8 cut(s) 74, 144, 170, 186, 293, 308, 317, 341
CviKI_1 RGCY 8 cut(s) 74, 144, 170, 186, 293, 308, 317, 341
CviQI GTAC 2 cut(s) 7, 55
EaeI YGGCCR 1 cut(s) 142
Eco130I CCWWGG 3 cut(s) 145, 260, 269
EcoT14I CCWWGG 3 cut(s) 145, 260, 269
ErhI CCWWGG 3 cut(s) 145, 260, 269
FaiI YATR 5 cut(s) 141, 164, 298, 312, 314
FaqI GGGAC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 2 cut(s) 28, 287
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 4 cut(s) 33, 261, 270, 342
GlaI GCGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 144
HhaI GCGC 1 cut(s) 302
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HinfI GANTC 2 cut(s) 47, 256
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 253
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 160, 280, 331
HpyCH4V TGCA 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 167, 299, 314
HspAI GCGC 1 cut(s) 300
LpnPI CCDG 1 cut(s) 261
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 1 cut(s) 148
MaeI CTAG 4 cut(s) 33, 261, 270, 342
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 1 cut(s) 224
MluNI TGGCCA 1 cut(s) 144
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 3 cut(s) 114, 240, 255
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 144
MwoI GCNNNNNNNGC 4 cut(s) 80, 167, 299, 314
NspV TTCGAA 1 cut(s) 189
PfeI GAWTC 1 cut(s) 256
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
RsaI GTAC 2 cut(s) 8, 56
RsaNI GTAC 2 cut(s) 7, 55
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 200
SchI GAGTC 1 cut(s) 41
SetI ASST 6 cut(s) 76, 125, 247, 271, 310, 319
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 2 cut(s) 171, 303
SfuI TTCGAA 1 cut(s) 189
Sse9I AATT 1 cut(s) 224
SspMI CTAG 4 cut(s) 33, 261, 270, 342
StyI CCWWGG 3 cut(s) 145, 260, 269
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 224
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 17, 179, 291
Van91I CCANNNNNTGG 1 cut(s) 115
XapI RAATTY 1 cut(s) 224
XmaJI CCTAGG 2 cut(s) 260, 269
XspI CTAG 4 cut(s) 33, 261, 270, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.