Rmu_sc0000600.1_g000051

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000600.1
OG0000415
Physical Location & Seq
Forward (+)
260117 .. 260689
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000600.1_g000051.1.cds

Sequence Viewer

Length: 573 bp
atgtattacaaatggttgcaatggttttcttctagaggttataactctttgcacaaaaccaatgagcaagttcaacatacaagaatgttgaaagagtacttggcagagaagattaagtgttggaatgatgaagtttatggtcaaggattcataaatgctatgcgtgctattgaaatagttggattcaaaactacggtggatcatatcgtcaaagatggaactctccctgtggttccaccggttgccccggttgtgatggggaagaagaagaagaccaccaccaccaccactgagttaacgaggaagaagaccacctgtgctccaataactgagctgttatggaaggcgactagcagcacaactaaatcattatggaaggccacagctgcaacaattaccaacttattatggaaggtcacagccgcctgtgaaacaccgcgatttgttactatggaaggacaccgccaccaccagtatcatcagggacaaagccataacaacttacatgttcccatggccgcatctcctactctcctttttgtatttattgggatattaatcgaacacaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

190

Amino Acids

21.7

Weight (kDa)

9.66

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AccII CGCG 1 cut(s) 439
AciI CCGC 4 cut(s) 423, 437, 463, 519
AclWI GGATC 1 cut(s) 207
AcoI YGGCCR 1 cut(s) 516
AfaI GTAC 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 505
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 4 cut(s) 74, 91, 173, 187
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 2 cut(s) 334, 386
AluI AGCT 2 cut(s) 334, 386
Alw21I GWGCWC 1 cut(s) 322
AlwI GGATC 1 cut(s) 207
AoxI GGCC 2 cut(s) 378, 516
ApeKI GCWGC 2 cut(s) 354, 386
AseI ATTAAT 1 cut(s) 557
AsiGI ACCGGT 1 cut(s) 238
AsuC2I CCSGG 1 cut(s) 248
BbsI GAAGAC 2 cut(s) 278, 314
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 2 cut(s) 366, 373
BccI CCATC 2 cut(s) 209, 250
BcnI CCSGG 1 cut(s) 248
BfaI CTAG 2 cut(s) 33, 351
BisI GCNGC 4 cut(s) 355, 387, 423, 519
BlsI GCNGC 4 cut(s) 356, 388, 424, 520
BmcAI AGTACT 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 530
BpiI GAAGAC 2 cut(s) 278, 314
BpuMI CCSGG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 246, 513
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 557
BseDI CCNNGG 2 cut(s) 246, 513
BseJI GATNNNNATC 1 cut(s) 557
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 2 cut(s) 282, 321
BseNI ACTGG 1 cut(s) 472
BseXI GCAGC 2 cut(s) 366, 373
Bsh1236I CGCG 1 cut(s) 439
BshFI GGCC 2 cut(s) 380, 518
BshTI ACCGGT 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 322
BsiSI CCGG 2 cut(s) 239, 248
BslFI GGGAC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 2 cut(s) 380, 518
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 1 cut(s) 199
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 4 cut(s) 423, 437, 463, 519
BspANI GGCC 2 cut(s) 380, 518
BspCNI CTCAG 2 cut(s) 283, 322
BspFNI CGCG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 246, 513
BssMI GATC 1 cut(s) 199
BssT1I CCWWGG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 291, 330
BstDSI CCRYGG 1 cut(s) 513
BstFNI CGCG 1 cut(s) 439
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 2 cut(s) 164, 386
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 246
BstUI CGCG 1 cut(s) 439
BstV1I GCAGC 2 cut(s) 366, 373
BstV2I GAAGAC 2 cut(s) 278, 314
BsuRI GGCC 2 cut(s) 380, 518
BtgI CCRYGG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 238
Csp6I GTAC 1 cut(s) 97
CspAI ACCGGT 1 cut(s) 238
CviAII CATG 2 cut(s) 506, 514
CviJI RGCY 6 cut(s) 334, 380, 386, 422, 492, 518
CviKI_1 RGCY 6 cut(s) 334, 380, 386, 422, 492, 518
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 291, 330
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 2 cut(s) 509, 517
FaqI GGGAC 1 cut(s) 498
FatI CATG 2 cut(s) 505, 513
Fnu4HI GCNGC 4 cut(s) 355, 387, 423, 519
Fsp4HI GCNGC 4 cut(s) 355, 387, 423, 519
FspBI CTAG 2 cut(s) 33, 351
GluI GCNGC 4 cut(s) 355, 387, 423, 519
HaeIII GGCC 2 cut(s) 380, 518
HapII CCGG 2 cut(s) 239, 248
Hin1II CATG 2 cut(s) 509, 517
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 2 cut(s) 147, 183
HpaI GTTAAC 1 cut(s) 297
HpaII CCGG 2 cut(s) 239, 248
Hpy166II GTNNAC 1 cut(s) 297
Hpy188III TCNNGA 1 cut(s) 33
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 4 cut(s) 337, 370, 406, 449
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 19, 52, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 386
HpyF3I CTNAG 2 cut(s) 291, 330
Hsp92II CATG 2 cut(s) 509, 517
KspAI GTTAAC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 7 cut(s) 240, 252, 261, 328, 439, 467, 485
Lsp1109I GCAGC 2 cut(s) 366, 373
LweI GCATC 1 cut(s) 530
MaeI CTAG 2 cut(s) 33, 351
MaeIII GTNAC 2 cut(s) 415, 445
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 8 cut(s) 21, 121, 274, 277, 280, 283, 316, 319
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 1 cut(s) 393
MmeI TCCRAC 2 cut(s) 101, 160
MnlI CCTC 2 cut(s) 29, 294
MseI TTAA 3 cut(s) 114, 296, 557
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 2 cut(s) 239, 248
MspR9I CCNGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 439
MwoI GCNNNNNNNGC 2 cut(s) 164, 386
NciI CCSGG 1 cut(s) 248
NcoI CCATGG 1 cut(s) 513
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 509, 517
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 415
NspI RCATGY 1 cut(s) 509
PciI ACATGT 1 cut(s) 505
PfeI GAWTC 2 cut(s) 147, 183
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 4 cut(s) 356, 388, 424, 520
PscI ACATGT 1 cut(s) 505
PshBI ATTAAT 1 cut(s) 557
PsiI TTATAA 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 3 cut(s) 114, 296, 557
SatI GCNGC 4 cut(s) 355, 387, 423, 519
Sau3AI GATC 1 cut(s) 199
ScaI AGTACT 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 322
SetI ASST 5 cut(s) 40, 317, 336, 388, 417
SfaNI GCATC 1 cut(s) 530
Sse9I AATT 1 cut(s) 393
SsiI CCGC 4 cut(s) 423, 437, 463, 519
SspMI CTAG 2 cut(s) 33, 351
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 561
TasI AATT 1 cut(s) 393
TatI WGTACW 1 cut(s) 96
TauI GCSGC 2 cut(s) 425, 521
TfiI GAWTC 2 cut(s) 147, 183
Tru1I TTAA 3 cut(s) 114, 296, 557
Tru9I TTAA 3 cut(s) 114, 296, 557
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 354, 386
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 139, 144
TspRI CASTG 1 cut(s) 295
VspI ATTAAT 1 cut(s) 557
XbaI TCTAGA 1 cut(s) 32
XceI RCATGY 1 cut(s) 509
XspI CTAG 2 cut(s) 33, 351
ZrmI AGTACT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.