Prupe.8G205400_v2.0.a1

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000415
Physical Location & Seq
Forward (+)
19232771 .. 19234933
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G205400.1

Sequence Viewer

Length: 966 bp
ATGAACAAGGAATTCACTAGAAAGAAAGTTAATATCCATCGCGAAGAATGTCATATTTGTGGTCCTCATCCACCTAATCGAGTCGTGTTACTCAATAAATTTTGGGGCCAAAGAGGTTGTGCGGAACATTTCGAGGATGGGACTCTGCGGTGCTATGCTTGCCATAGATTTAAGGAACCAGAAATAAAATATGTAGAGGTTGATGGGCGGCAACTTTGCTCATATTGCTATTCTATTACTATCATGGATCCAGAGGAATGCGAACTTCTTATTTTTGAAAACGTGCGTAGATTTTATGCAAGTTTAGATCTCAATGTGGATGAAGGCATTCCTATTTTATTGGTGGATAGAGATGAGATGATCAAATTTAAAGACGAAAAGACAGAGACAATACATATTTCCTGTATGCCTTTGTATCAGATTAATAGATGTACAAAATACGAGGACAGAATTAAAGTCGAGAAGAAAGCCAACAAAGTTGTTAAGCGGCAACTTTTAGCAGCATTATTTTGCTGCGGCCAAAGAGAGATGATTAGACTTCTACTTCAATTCGGATGGCCCGAGTACTTTTATCTTCCTTACAGTGTGCTTATGGGCATGACATTGGCACATGAGATGATGCATGCATGGTTAAGCTTTCAAGGTCTAATTGTTGGTTTTGCACTGGAAAGATGGGTAGAAGAAGGTATTTGCGAAGTAATGTCACACAAATATGGGCAATGGTATTGTTCAAGGGGTTTGGACTACTCATACAAAACCAAAGAGCAGTTTAATTTCACAATAAATTTGTACCAGTATAGAGTAGAACTTATGAAAATCCGTTCCGATGAAATTTATGGAAAAGGGTTCAACCAGGTAATGCAGGCTGTTGAGGAATATGGCTTCCAAACGACACTGGATCATATCGTTGCAGCAAGATGTCTGCCACATATCTGTACGAATTCGAAGTATGATGATGACGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

322

Amino Acids

38.11

Weight (kDa)

6.16

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 42
AciI CCGC 5 cut(s) 122, 148, 208, 487, 516
AclWI GGATC 3 cut(s) 242, 255, 906
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 6 cut(s) 11, 98, 365, 784, 831, 940
AfaI GTAC 4 cut(s) 433, 566, 791, 937
AgsI TTSAA 5 cut(s) 278, 548, 641, 732, 850
AjnI CCWGG 1 cut(s) 852
AluBI AGCT 1 cut(s) 636
AluI AGCT 1 cut(s) 636
Alw26I GTCTC 1 cut(s) 380
AlwI GGATC 3 cut(s) 242, 255, 906
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 3 cut(s) 106, 517, 557
ApeKI GCWGC 3 cut(s) 500, 513, 911
ApoI RAATTY 6 cut(s) 11, 98, 365, 784, 831, 940
AseI ATTAAT 1 cut(s) 423
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 3 cut(s) 62, 106, 558
AsuII TTCGAA 1 cut(s) 944
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 1 cut(s) 62
BamHI GGATCC 1 cut(s) 247
BbvI GCAGC 3 cut(s) 500, 512, 923
BccI CCATC 5 cut(s) 45, 131, 197, 549, 666
BciT130I CCWGG 1 cut(s) 854
BclI TGATCA 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 380
BfaI CTAG 1 cut(s) 18
BglII AGATCT 1 cut(s) 307
BisI GCNGC 6 cut(s) 209, 488, 501, 514, 517, 912
BlsI GCNGC 6 cut(s) 210, 489, 502, 515, 518, 913
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 1 cut(s) 854
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 3 cut(s) 62, 106, 558
BmiI GGNNCC 3 cut(s) 107, 177, 249
BmrFI CCNGG 1 cut(s) 854
BmsI GCATC 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 944
Bse1I ACTGG 3 cut(s) 669, 793, 900
Bse3DI GCAATG 1 cut(s) 725
BseBI CCWGG 1 cut(s) 854
BseGI GGATG 4 cut(s) 67, 142, 325, 560
BseMI GCAATG 1 cut(s) 725
BseNI ACTGG 3 cut(s) 669, 793, 900
BseXI GCAGC 3 cut(s) 500, 512, 923
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 108, 519, 559
BsiHKCI CYCGRG 1 cut(s) 560
BslFI GGGAC 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 2 cut(s) 263, 327
BsnI GGCC 3 cut(s) 108, 519, 559
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 944
Bsp1407I TGTACA 1 cut(s) 431
Bsp143I GATC 4 cut(s) 247, 307, 360, 898
Bsp68I TCGCGA 1 cut(s) 42
BspACI CCGC 5 cut(s) 122, 148, 208, 487, 516
BspANI GGCC 3 cut(s) 108, 519, 559
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 107, 177, 249
BspPI GGATC 3 cut(s) 242, 255, 906
BspT104I TTCGAA 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 725
BsrGI TGTACA 1 cut(s) 431
BsrI ACTGG 3 cut(s) 669, 793, 900
BssMI GATC 4 cut(s) 247, 307, 360, 898
Bst2UI CCWGG 1 cut(s) 854
Bst4CI ACNGT 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 944
BstC8I GCNNGC 3 cut(s) 160, 624, 864
BstF5I GGATG 4 cut(s) 67, 142, 325, 560
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 4 cut(s) 250, 310, 363, 901
BstMAI GTCTC 1 cut(s) 380
BstMBI GATC 4 cut(s) 247, 307, 360, 898
BstMWI GCNNNNNNNGC 2 cut(s) 159, 225
BstNI CCWGG 1 cut(s) 854
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 1 cut(s) 852
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 500, 512, 923
BstX2I RGATCY 2 cut(s) 247, 307
BstYI RGATCY 2 cut(s) 247, 307
BsuRI GGCC 3 cut(s) 108, 519, 559
BtgZI GCGATG 1 cut(s) 23
BtsCI GGATG 4 cut(s) 67, 142, 325, 560
BtsIMutI CAGTG 3 cut(s) 589, 662, 893
BtuMI TCGCGA 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 160, 624, 864
Cfr13I GGNCC 3 cut(s) 62, 106, 558
CsiI ACCWGGT 1 cut(s) 852
Csp6I GTAC 4 cut(s) 432, 565, 790, 936
CviAII CATG 5 cut(s) 244, 598, 611, 623, 627
CviJI RGCY 7 cut(s) 108, 470, 519, 559, 636, 866, 882
CviKI_1 RGCY 7 cut(s) 108, 470, 519, 559, 636, 866, 882
CviQI GTAC 4 cut(s) 432, 565, 790, 936
DpnI GATC 4 cut(s) 249, 309, 362, 900
DpnII GATC 4 cut(s) 247, 307, 360, 898
DraI TTTAAA 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 560
EcoRI GAATTC 2 cut(s) 11, 940
EcoRII CCWGG 1 cut(s) 852
EcoT22I ATGCAT 2 cut(s) 624, 628
FaeI CATG 5 cut(s) 247, 601, 614, 626, 630
FaqI GGGAC 1 cut(s) 154
FatI CATG 5 cut(s) 243, 597, 610, 622, 626
FbaI TGATCA 1 cut(s) 360
Fnu4HI GCNGC 6 cut(s) 209, 488, 501, 514, 517, 912
FokI GGATG 4 cut(s) 54, 149, 332, 567
Fsp4HI GCNGC 6 cut(s) 209, 488, 501, 514, 517, 912
FspBI CTAG 1 cut(s) 18
GluI GCNGC 6 cut(s) 209, 488, 501, 514, 517, 912
HaeIII GGCC 3 cut(s) 108, 519, 559
Hin1II CATG 5 cut(s) 247, 601, 614, 626, 630
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 2 cut(s) 81, 142
Hpy188I TCNGA 3 cut(s) 420, 554, 826
Hpy188III TCNNGA 3 cut(s) 41, 251, 460
HpyAV CCTTC 2 cut(s) 317, 677
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 6 cut(s) 299, 622, 626, 662, 862, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 225
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 5 cut(s) 247, 601, 614, 626, 630
Ksp22I TGATCA 1 cut(s) 360
Kzo9I GATC 4 cut(s) 247, 307, 360, 898
LpnPI CCDG 9 cut(s) 192, 264, 415, 650, 806, 839, 848, 866, 881
Lsp1109I GCAGC 3 cut(s) 500, 512, 923
LweI GCATC 1 cut(s) 609
MabI ACCWGGT 1 cut(s) 852
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 87, 702
MalI GATC 4 cut(s) 249, 309, 362, 900
MboI GATC 4 cut(s) 247, 307, 360, 898
MboII GAAGA 4 cut(s) 56, 475, 566, 692
MflI RGATCY 2 cut(s) 247, 307
MlyI GAGTC 2 cut(s) 90, 136
MnlI CCTC 7 cut(s) 75, 107, 127, 190, 247, 436, 865
Mph1103I ATGCAT 2 cut(s) 624, 628
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 8 cut(s) 30, 171, 369, 423, 453, 483, 632, 771
MslI CAYNNNNRTG 2 cut(s) 57, 711
MspR9I CCNGG 1 cut(s) 854
Mva1269I GAATGC 2 cut(s) 263, 327
MvaI CCWGG 1 cut(s) 854
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 159, 225
NdeII GATC 4 cut(s) 247, 307, 360, 898
NlaIII CATG 5 cut(s) 247, 601, 614, 626, 630
NlaIV GGNNCC 3 cut(s) 107, 177, 249
NmuCI GTSAC 1 cut(s) 702
NruI TCGCGA 1 cut(s) 42
NsiI ATGCAT 2 cut(s) 624, 628
NspI RCATGY 1 cut(s) 626
NspV TTCGAA 1 cut(s) 944
PaeI GCATGC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PctI GAATGC 2 cut(s) 263, 327
PdmI GAANNNNTTC 1 cut(s) 327
PkrI GCNGC 6 cut(s) 210, 489, 502, 515, 518, 913
PleI GAGTC 2 cut(s) 89, 136
PpsI GAGTC 2 cut(s) 89, 136
PshBI ATTAAT 1 cut(s) 423
Psp6I CCWGG 1 cut(s) 852
PspGI CCWGG 1 cut(s) 852
PspN4I GGNNCC 3 cut(s) 107, 177, 249
PspPI GGNCC 3 cut(s) 62, 106, 558
PsuI RGATCY 2 cut(s) 247, 307
RruI TCGCGA 1 cut(s) 42
RsaI GTAC 4 cut(s) 433, 566, 791, 937
RsaNI GTAC 4 cut(s) 432, 565, 790, 936
RseI CAYNNNNRTG 2 cut(s) 57, 711
SaqAI TTAA 8 cut(s) 30, 171, 369, 423, 453, 483, 632, 771
SatI GCNGC 6 cut(s) 209, 488, 501, 514, 517, 912
Sau3AI GATC 4 cut(s) 247, 307, 360, 898
Sau96I GGNCC 3 cut(s) 62, 106, 558
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 2 cut(s) 90, 136
ScrFI CCNGG 1 cut(s) 854
SetI ASST 8 cut(s) 76, 118, 201, 285, 638, 646, 688, 858
SexAI ACCWGGT 1 cut(s) 852
SfaNI GCATC 1 cut(s) 609
SfuI TTCGAA 1 cut(s) 944
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 2 cut(s) 57, 711
SphI GCATGC 1 cut(s) 626
SsiI CCGC 5 cut(s) 122, 148, 208, 487, 516
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 852
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 1 cut(s) 285
TaqI TCGA 4 cut(s) 79, 132, 459, 944
TatI WGTACW 2 cut(s) 431, 564
TauI GCSGC 3 cut(s) 211, 490, 519
Tru1I TTAA 8 cut(s) 30, 171, 369, 423, 453, 483, 632, 771
Tru9I TTAA 8 cut(s) 30, 171, 369, 423, 453, 483, 632, 771
TscAI CASTG 3 cut(s) 589, 669, 900
TseFI GTSAC 1 cut(s) 702
TseI GCWGC 3 cut(s) 500, 513, 911
Tsp45I GTSAC 1 cut(s) 702
TspDTI ATGAA 4 cut(s) 17, 336, 827, 843
TspGWI ACGGA 1 cut(s) 809
TspRI CASTG 3 cut(s) 589, 669, 900
VpaK11BI GGWCC 1 cut(s) 62
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 6 cut(s) 11, 98, 365, 784, 831, 940
XceI RCATGY 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 18
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 2 cut(s) 624, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.