Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000415

Physical Location & Seq

Genomic Coordinates Reverse (-)

9083422 .. 9090251

Gene Structure 6830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG122400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTCGCAGATTAACGACTCTGAGGAAGTGAAGCATGATATTAGTTTGGCAAACGCTTCCGATCCATGGTGTAATACTTGCTTCAGATATAAGGAAGCTGGAGAAACAGGATGTCTGAACCTTGGTGATGGCCGACAACTTTGCTCAGATTGTTCTTCTATAGCGGTCACGAATTTAGAGGAATGCAATTTCATAATCCAAAATGTGTTTGAATTCTACAGAATCTTAAATCTCAAAGTGGATGAAAAAATTCCCATCTTCTTCGTCGACAAGATTCAAATGAGCAGAATATCTCACGGTGACATAGAAAAATATTCGAGAAGTGGAGGTGGTATTAAAAAGGTTGTGAAGCTCCCACTAGGAGAGGCAAATTCTACTTTTGTTTGGAACACCAGGGTTGCGCCGCTGGCCCTTTTCGGTTCGGGTTGCGCCACTGGCCTCCTGGATAATTTTTTGGGCTTGGGCTTACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

157

Amino Acids

17.3

Weight (kDa)

5.16

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica	MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica	Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata	RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora	Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii	Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa	Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha	Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana	Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	2 cut(s)	164, 404
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	4 cut(s)	172, 212, 249, 370
AcuI	CTGAAG	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	212, 278
AjnI	CCWGG	2 cut(s)	392, 441
AluBI	AGCT	2 cut(s)	98, 352
AluI	AGCT	2 cut(s)	98, 352
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	3 cut(s)	130, 408, 436
ApoI	RAATTY	4 cut(s)	172, 212, 249, 370
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	403, 431
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	137, 311
BccI	CCATC	2 cut(s)	122, 263
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BciT130I	CCWGG	2 cut(s)	394, 443
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	2 cut(s)	159, 217
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	2 cut(s)	394, 443
BmgT120I	GGNCC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	394, 443
BpmI	CTGGAG	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	65, 121, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	439
BseBI	CCWGG	2 cut(s)	394, 443
BseDI	CCNNGG	3 cut(s)	65, 121, 393
BseGI	GGATG	2 cut(s)	116, 247
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	12, 159
BseNI	ACTGG	1 cut(s)	439
BshFI	GGCC	3 cut(s)	132, 410, 438
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	132, 410, 438
Bsp143I	GATC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	2 cut(s)	164, 404
BspANI	GGCC	3 cut(s)	132, 410, 438
BspCNI	CTCAG	2 cut(s)	13, 158
BspPI	GGATC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	3 cut(s)	65, 121, 393
BssMI	GATC	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	65, 121
Bst2UI	CCWGG	2 cut(s)	394, 443
Bst4CI	ACNGT	2 cut(s)	299, 471
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	21, 145
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	116, 247
BstHHI	GCGC	2 cut(s)	403, 431
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 435
BstNI	CCWGG	2 cut(s)	394, 443
BstSCI	CCNGG	2 cut(s)	392, 441
BstSFI	CTRYAG	2 cut(s)	159, 217
BsuRI	GGCC	3 cut(s)	132, 410, 438
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	116, 247
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	408
CfoI	GCGC	2 cut(s)	403, 431
Cfr13I	GGNCC	1 cut(s)	409
CviAII	CATG	2 cut(s)	35, 66
CviJI	RGCY	7 cut(s)	98, 132, 352, 410, 438, 459, 465
CviKI_1	RGCY	7 cut(s)	98, 132, 352, 410, 438, 459, 465
DdeI	CTNAG	2 cut(s)	21, 145
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	65, 121
Eco57I	CTGAAG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	392, 441
EcoT14I	CCWWGG	2 cut(s)	65, 121
ErhI	CCWWGG	2 cut(s)	65, 121
FaeI	CATG	2 cut(s)	38, 69
FaiI	YATR	6 cut(s)	36, 67, 90, 161, 194, 305
FatI	CATG	2 cut(s)	34, 65
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	123, 254
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	2 cut(s)	402, 430
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	132, 410, 438
HhaI	GCGC	2 cut(s)	403, 431
Hin1II	CATG	2 cut(s)	38, 69
Hin6I	GCGC	2 cut(s)	401, 429
HinP1I	GCGC	2 cut(s)	401, 429
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	3 cut(s)	17, 222, 274
HphI	GGTGA	2 cut(s)	137, 311
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	5 cut(s)	22, 61, 86, 117, 148
Hpy188III	TCNNGA	2 cut(s)	169, 318
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	299, 471
HpyCH4V	TGCA	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 435
HpyF3I	CTNAG	2 cut(s)	21, 145
Hsp92II	CATG	2 cut(s)	38, 69
HspAI	GCGC	2 cut(s)	401, 429
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	8 cut(s)	84, 93, 379, 392, 406, 420, 428, 455
MaeI	CTAG	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	166, 299
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	147, 250, 253
MluCI	AATT	6 cut(s)	172, 187, 212, 249, 370, 448
MlyI	GAGTC	1 cut(s)	11
MnlI	CCTC	5 cut(s)	16, 172, 320, 358, 449
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	12, 227, 336
MspA1I	CMGCKG	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	394, 443
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	2 cut(s)	394, 443
MwoI	GCNNNNNNNGC	2 cut(s)	407, 435
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	38, 69
NmuCI	GTSAC	2 cut(s)	166, 299
PctI	GAATGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	222, 274
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	392, 441
PspGI	CCWGG	2 cut(s)	392, 441
PspPI	GGNCC	1 cut(s)	409
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	12, 227, 336
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	394, 443
SetI	ASST	5 cut(s)	100, 123, 331, 345, 354
SfcI	CTRYAG	2 cut(s)	159, 217
Sse9I	AATT	6 cut(s)	172, 187, 212, 249, 370, 448
SsiI	CCGC	2 cut(s)	164, 404
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	2 cut(s)	392, 441
StyI	CCWWGG	2 cut(s)	65, 121
TaaI	ACNGT	2 cut(s)	299, 471
TaqI	TCGA	2 cut(s)	267, 317
TasI	AATT	6 cut(s)	172, 187, 212, 249, 370, 448
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	222, 274
Tru1I	TTAA	3 cut(s)	12, 227, 336
Tru9I	TTAA	3 cut(s)	12, 227, 336
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	166, 299
Tsp45I	GTSAC	2 cut(s)	166, 299
TspDTI	ATGAA	2 cut(s)	181, 258
TspRI	CASTG	1 cut(s)	439
XapI	RAATTY	4 cut(s)	172, 212, 249, 370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.