Prupe.2G100600_v2.0.a1

actinin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000415
Physical Location & Seq
Forward (+)
15633113 .. 15636495
3383 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G100600.1

Sequence Viewer

Length: 930 bp
ATGGGAAATACTTGCTCTCCTCGCGTTCCCAACAAGCCCCCGCCAAGGTTTTTGGGTTATAACAGTGGACCAAATTTCGAAATATGCCATGTTTGCAATCGAAATATTGAAAGATGGGATAATTTGAGGCAATTGACATTCTGGGGTTTTAAATTCTGCAAGATGCATGAAGTTGATGGGACTCCGAGGTGCAGTGGTTGTTACAGATTCCAGACAGAAGGACAAATGGAATATGTGAACCTTGGAGATGGCCGTAAACTTTGCTTGGATTGCTATTCTATTGCTATTTTGGATCCAAGTAAATGCAACCGTCTTATTGAAAAGATGCGTGAATTTTATAAAGAGTTAAATCTCGAAGTGGATAAGGACATTCCTATTCTATTGGTCGACAAAGACTACATGGACAAAAGGGGTGCGATTGGATTGACCACATTCGATCACAGAAAAGTCTGGACGATTACAAATTGGTCAAGAAATGGGAATAATATTCAAGTGCAGAAAGCTAAAAAGGCGTTGACCAAGGCCAAAGTCTCATCAATCTTACTTTTGTTCGGAATGCCAGATGTTATAATGGGCGCGATCTTGGCACATGAGATGATGCATGCATGGTTAATTCTTAAAGGTTGTAAGAAGTTGGATAGAAAAGTGTGTGAAGGTATTTGTGAAGTGATGGCACACCTGTGGTTGGAATGGTTTTGTGATGAGGGGAAGAATAATTTGGACTCTTACACAACCGAGCAGGCTGAGTTTACGAAGATTTTGAAAATAATTCATGCATACAAGATGACAACGAGAGTTGACAAAATATATGGAGATGGGTTTAGAGAAGCTCAGCGGGCAGTTAGTACATCTAACCTCCACAAAACCCTGCAACATATCGTTCGACACAAGACTCTCCCTCCTCAGATCCATAGCAACTCAACTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000131 GO:0000278 GO:0000281 GO:0000746 GO:0000747 GO:0000755 GO:0000910 GO:0000917 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005933 GO:0005934 GO:0005935 GO:0005937 GO:0006109 GO:0006996 GO:0007010 GO:0007049 GO:0008047 GO:0008150 GO:0008360 GO:0009272 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010556 GO:0010646 GO:0010648 GO:0010675 GO:0010962 GO:0010981 GO:0016043 GO:0019222 GO:0019904 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0023051 GO:0023057 GO:0030016 GO:0030017 GO:0030029 GO:0030036 GO:0030234 GO:0030427 GO:0030695 GO:0031323 GO:0031326 GO:0031430 GO:0031672 GO:0032505 GO:0032506 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032952 GO:0032953 GO:0032995 GO:0035023 GO:0035024 GO:0042546 GO:0042995 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043255 GO:0043292 GO:0043332 GO:0043547 GO:0044085 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044444 GO:0044449 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0046578 GO:0046580 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051056 GO:0051058 GO:0051128 GO:0051179 GO:0051286 GO:0051301 GO:0051336 GO:0051345 GO:0051641 GO:0051666 GO:0051704 GO:0055120 GO:0060237 GO:0060255 GO:0060589 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071840 GO:0071852 GO:0080090 GO:0090036 GO:0090038 GO:0090334 GO:0090529 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120038 GO:1902410 GO:1902531 GO:1902532 GO:1903047 GO:1903338 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM RhoGAP

Protein Analysis

310

Amino Acids

35.74

Weight (kDa)

8.98

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 60, 339, 569
AccI GTMKAC 1 cut(s) 387
AccII CGCG 2 cut(s) 24, 578
AciI CCGC 2 cut(s) 41, 835
AclWI GGATC 3 cut(s) 287, 300, 901
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 3 cut(s) 73, 152, 332
AfaI GTAC 1 cut(s) 847
AfiI CCNNNNNNNGG 2 cut(s) 45, 685
AgsI TTSAA 4 cut(s) 110, 320, 491, 763
AjuI GAANNNNNNNTTGG 2 cut(s) 701, 733
AleI CACNNNNGTG 1 cut(s) 679
AluBI AGCT 2 cut(s) 503, 830
AluI AGCT 2 cut(s) 503, 830
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 3 cut(s) 287, 300, 901
AoxI GGCC 2 cut(s) 250, 522
ApoI RAATTY 3 cut(s) 73, 152, 332
AspLEI GCGC 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 68
AsuII TTCGAA 1 cut(s) 78
AvaII GGWCC 1 cut(s) 68
BamHI GGATCC 1 cut(s) 292
BccI CCATC 5 cut(s) 108, 170, 242, 664, 809
BceAI ACGGC 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 535
BlpI GCTNAGC 1 cut(s) 831
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 3 cut(s) 153, 315, 588
Bpu1102I GCTNAGC 1 cut(s) 831
Bpu14I TTCGAA 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 44, 185, 241, 519
BsaXI ACNNNNNCTCC 3 cut(s) 31, 883, 913
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 685
BseDI CCNNGG 4 cut(s) 44, 185, 241, 519
BseLI CCNNNNNNNGG 2 cut(s) 45, 685
BseMII CTCAG 3 cut(s) 735, 845, 917
BseRI GAGGAG 2 cut(s) 9, 891
BsgI GTGCAG 2 cut(s) 211, 515
Bsh1236I CGCG 2 cut(s) 24, 578
BshFI GGCC 2 cut(s) 252, 524
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 45, 685
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 561
BsnI GGCC 2 cut(s) 252, 524
Bsp119I TTCGAA 1 cut(s) 78
Bsp143I GATC 4 cut(s) 292, 436, 579, 906
Bsp1720I GCTNAGC 1 cut(s) 831
BspACI CCGC 2 cut(s) 41, 835
BspANI GGCC 2 cut(s) 252, 524
BspCNI CTCAG 3 cut(s) 736, 844, 916
BspFNI CGCG 2 cut(s) 24, 578
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 3 cut(s) 287, 300, 901
BspT104I TTCGAA 1 cut(s) 78
BssECI CCNNGG 4 cut(s) 44, 185, 241, 519
BssMI GATC 4 cut(s) 292, 436, 579, 906
BssT1I CCWWGG 3 cut(s) 44, 241, 519
Bst4CI ACNGT 2 cut(s) 65, 311
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 603, 741, 837
BstDEI CTNAG 3 cut(s) 744, 831, 903
BstFNI CGCG 2 cut(s) 24, 578
BstHHI GCGC 1 cut(s) 578
BstKTI GATC 4 cut(s) 295, 439, 582, 909
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 4 cut(s) 292, 436, 579, 906
BstMWI GCNNNNNNNGC 6 cut(s) 21, 93, 270, 509, 584, 836
BstNSI RCATGY 1 cut(s) 605
BstUI CGCG 2 cut(s) 24, 578
BstX2I RGATCY 2 cut(s) 292, 906
BstYI RGATCY 2 cut(s) 292, 906
BsuRI GGCC 2 cut(s) 252, 524
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 70, 199
Cac8I GCNNGC 3 cut(s) 603, 741, 837
CfoI GCGC 1 cut(s) 578
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 846
CviAII CATG 7 cut(s) 89, 167, 400, 590, 602, 606, 773
CviJI RGCY 6 cut(s) 37, 252, 503, 524, 743, 830
CviKI_1 RGCY 6 cut(s) 37, 252, 503, 524, 743, 830
CviQI GTAC 1 cut(s) 846
DdeI CTNAG 3 cut(s) 744, 831, 903
DpnI GATC 4 cut(s) 294, 438, 581, 908
DpnII GATC 4 cut(s) 292, 436, 579, 906
DraI TTTAAA 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 3 cut(s) 44, 241, 519
Eco47I GGWCC 1 cut(s) 68
EcoT14I CCWWGG 3 cut(s) 44, 241, 519
EcoT22I ATGCAT 4 cut(s) 168, 603, 607, 778
ErhI CCWWGG 3 cut(s) 44, 241, 519
FaeI CATG 7 cut(s) 92, 170, 403, 593, 605, 609, 776
FaqI GGGAC 1 cut(s) 193
FatI CATG 7 cut(s) 88, 166, 399, 589, 601, 605, 772
FauI CCCGC 2 cut(s) 48, 828
FblI GTMKAC 1 cut(s) 387
GlaI GCGC 1 cut(s) 577
HaeIII GGCC 2 cut(s) 252, 524
HhaI GCGC 1 cut(s) 578
Hin1II CATG 7 cut(s) 92, 170, 403, 593, 605, 609, 776
Hin6I GCGC 1 cut(s) 576
HinP1I GCGC 1 cut(s) 576
HincII GTYRAC 3 cut(s) 388, 516, 799
HindII GTYRAC 3 cut(s) 388, 516, 799
HinfI GANTC 4 cut(s) 181, 207, 722, 892
Hpy166II GTNNAC 7 cut(s) 68, 238, 257, 388, 516, 750, 799
Hpy188I TCNGA 3 cut(s) 186, 554, 906
Hpy188III TCNNGA 4 cut(s) 211, 353, 451, 471
Hpy8I GTNNAC 7 cut(s) 68, 238, 257, 388, 516, 750, 799
HpyAV CCTTC 2 cut(s) 212, 647
HpyCH4III ACNGT 2 cut(s) 65, 311
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 93, 270, 509, 584, 836
HpyF3I CTNAG 3 cut(s) 744, 831, 903
Hsp92II CATG 7 cut(s) 92, 170, 403, 593, 605, 609, 776
HspAI GCGC 1 cut(s) 576
Kzo9I GATC 4 cut(s) 292, 436, 579, 906
LpnPI CCDG 7 cut(s) 127, 224, 436, 573, 692, 725, 881
LweI GCATC 3 cut(s) 153, 315, 588
MaeIII GTNAC 1 cut(s) 200
MalI GATC 4 cut(s) 294, 438, 581, 908
MboI GATC 4 cut(s) 292, 436, 579, 906
MboII GAAGA 2 cut(s) 721, 766
MfeI CAATTG 1 cut(s) 131
MflI RGATCY 2 cut(s) 292, 906
MluCI AATT 9 cut(s) 73, 121, 131, 152, 332, 463, 612, 715, 768
MlyI GAGTC 3 cut(s) 175, 716, 886
MmeI TCCRAC 2 cut(s) 615, 666
MnlI CCTC 7 cut(s) 30, 120, 180, 697, 866, 909, 912
Mph1103I ATGCAT 4 cut(s) 168, 603, 607, 778
MseI TTAA 5 cut(s) 150, 347, 611, 618, 928
MslI CAYNNNNRTG 1 cut(s) 679
MspA1I CMGCKG 1 cut(s) 835
MunI CAATTG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 561
MvnI CGCG 2 cut(s) 24, 578
MwoI GCNNNNNNNGC 6 cut(s) 21, 93, 270, 509, 584, 836
NdeII GATC 4 cut(s) 292, 436, 579, 906
NlaIII CATG 7 cut(s) 92, 170, 403, 593, 605, 609, 776
NlaIV GGNNCC 1 cut(s) 294
NsiI ATGCAT 4 cut(s) 168, 603, 607, 778
NspI RCATGY 1 cut(s) 605
NspV TTCGAA 1 cut(s) 78
OliI CACNNNNGTG 1 cut(s) 679
PaeI GCATGC 1 cut(s) 605
PctI GAATGC 1 cut(s) 561
PfeI GAWTC 1 cut(s) 207
PleI GAGTC 3 cut(s) 175, 716, 886
PpsI GAGTC 3 cut(s) 175, 716, 886
PsiI TTATAA 3 cut(s) 60, 339, 569
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 2 cut(s) 292, 906
RsaI GTAC 1 cut(s) 847
RsaNI GTAC 1 cut(s) 846
RseI CAYNNNNRTG 1 cut(s) 679
SalI GTCGAC 1 cut(s) 386
SaqAI TTAA 5 cut(s) 150, 347, 611, 618, 928
Sau3AI GATC 4 cut(s) 292, 436, 579, 906
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 3 cut(s) 175, 716, 886
SetI ASST 9 cut(s) 50, 191, 243, 505, 625, 658, 681, 832, 858
SfaNI GCATC 3 cut(s) 153, 315, 588
SfuI TTCGAA 1 cut(s) 78
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 679
SphI GCATGC 1 cut(s) 605
Sse9I AATT 9 cut(s) 73, 121, 131, 152, 332, 463, 612, 715, 768
SsiI CCGC 2 cut(s) 41, 835
SspI AATATT 2 cut(s) 106, 487
StyI CCWWGG 3 cut(s) 44, 241, 519
TaaI ACNGT 2 cut(s) 65, 311
TaqI TCGA 6 cut(s) 78, 100, 354, 387, 435, 883
TasI AATT 9 cut(s) 73, 121, 131, 152, 332, 463, 612, 715, 768
TatI WGTACW 1 cut(s) 845
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 5 cut(s) 150, 347, 611, 618, 928
Tru9I TTAA 5 cut(s) 150, 347, 611, 618, 928
TscAI CASTG 2 cut(s) 70, 199
TspDTI ATGAA 2 cut(s) 183, 761
TspRI CASTG 2 cut(s) 70, 199
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 3 cut(s) 73, 152, 332
XceI RCATGY 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 387
Zsp2I ATGCAT 4 cut(s) 168, 603, 607, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.