Rh6CG290700

Protein DA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000415
Physical Location & Seq
Reverse (-)
46832312 .. 46838421
6110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG290700.1

Sequence Viewer

Length: 552 bp
ATGGCTACTCAGTGCGGAGTCTGCAATGTATATTCTAAAGCTCAGGACCCAGAATATTTGGACCTTGATGATAATGGCAGAAAACTTTGCTCATATTGTTCTAGCATTGCTACCTTGGATCCAGAGGAATGCATGCCCCTTATTCAAAATGTGCGTGAATTTTACAGAAGTTTAAACCTCGTGGTGGATGAAACCATTCCTTTTTTGTTGGTCGACAAGGATATGATGCTCAAATTCATACCAGGTGGAGAAACACACAGAGAGGTTAACCCGACGTTGCAACTTATTGACCCTGCGACGAAAAAGTTCAGTAAAGGCATTGATAATTTTGTTCGGTTCACCGGGCTATCCTATACCAGTGTTTCGGAACCACCCACTTCGCATAAAAGAAGTGCAGGGATTGTGGATGAGGGTGACTACCTTGTTGATGAGATCTTGGCCGGGATTGGAGATGGGTGGAATCATTCCGTGCTAATTTTGGAGGAGGAAGAGATGGACATTGCGGTGGGTTTTGGGTGTGGGTGTGCGGAGAAGTTAAGCATTCGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like

Protein Analysis

183

Amino Acids

20.3

Weight (kDa)

4.5

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000415)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17790 FvH4_2g20000 FvH4_5g06730 FvH4_5g06800 FvH4_5g06820 FvH4_6g04440 FvH4_6g04540 FvH4_6g34210
malus_domestica MD10G1023300.v1.1 MD14G1198500.v1.1
prunus_persica Prupe.2G100600_v2.0.a1 Prupe.8G205400_v2.0.a1 Prupe.8G205500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0321451 RchiOBHm_Chr2g0160021 RchiOBHm_Chr4g0407711 RchiOBHm_Chr4g0407721 RchiOBHm_Chr4g0407751 RchiOBHm_Chr4g0407761 RchiOBHm_Chr6g0282811 RchiOBHm_Chr6g0285651 RchiOBHm_Chr6g0285661 RchiOBHm_Chr6g0285691 RchiOBHm_Chr6g0285701 RchiOBHm_Chr7g0191701
rosa_laevigata RLG00000001989 RLG00000003825 RLG00000004431 RLG00000012616 RLG00000012797 RLG00000012866 RLG00000015356 RLG00000021192 RLG00000025443
rosa_multiflora Rmu_sc0000600.1_g000050 Rmu_sc0000600.1_g000051 Rmu_sc0000600.1_g000053 Rmu_sc0000600.1_g000054 Rmu_sc0001123.1_g000019 Rmu_sc0001123.1_g000023 Rmu_sc0001521.1_g000015 Rmu_sc0002023.1_g000017
rosa_roxburghii Rroxscaffold_157G00438540 Rroxscaffold_2G00090090 Rroxscaffold_3G00263620 Rroxscaffold_7G00182850 Rroxscaffold_7G00185190 Rroxscaffold_7G00186010 Rroxscaffold_7G00215810
rosa_rugosa Rorug02G0479800 Rorug03G0030400 Rorug03G0077500 Rorug04G0221600 Rorug06G0006300 Rorug06G0157700 Rorug06G0176400 Rorug06G0511100 Rorug07G0052100 Rorug07G0220500
rosa_samantha Rh2AG546400 Rh2BG559800 Rh2CG529800 Rh2DG568400 Rh2DG568500 Rh3BG143100 Rh3DG144300 Rh4AG146200 Rh4AG146300 Rh4BG153900 Rh4CG152800 Rh6AG024300 Rh6AG262900 Rh6AG270400 Rh6AG288000 Rh6BG265800 Rh6BG272000 Rh6BG289500 Rh6CG016700 Rh6CG265100 Rh6CG272600 Rh6CG272700 Rh6CG290500 Rh6CG290700 Rh6DG017800 Rh6DG257600 Rh6DG265800 Rh6DG283200 Rh7AG119900 Rh7AG120400 Rh7BG122400 Rh7BG178300 Rh7CG125000 Rh7CG125100 Rh7DG123200 Rh7DG123500 Rh7DG123600
rosa_wichuraiana Rw4G011890 Rw4G011910 Rw4G011920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AciI CCGC 3 cut(s) 15, 503, 527
AclWI GGATC 2 cut(s) 113, 126
AcoI YGGCCR 1 cut(s) 438
AcsI RAATTY 2 cut(s) 158, 233
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 1 cut(s) 146
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AlwI GGATC 2 cut(s) 113, 126
AoxI GGCC 1 cut(s) 438
ApoI RAATTY 2 cut(s) 158, 233
Asp700I GAANNNNTTC 2 cut(s) 195, 305
AspS9I GGNCC 2 cut(s) 46, 61
AsuC2I CCSGG 2 cut(s) 343, 442
AsuHPI GGTGA 2 cut(s) 331, 425
AsuII TTCGAA 1 cut(s) 544
AvaII GGWCC 2 cut(s) 46, 61
BamHI GGATCC 1 cut(s) 118
BauI CACGAG 1 cut(s) 179
BccI CCATC 2 cut(s) 446, 487
BciT130I CCWGG 1 cut(s) 243
BcnI CCSGG 2 cut(s) 343, 442
BfaI CTAG 1 cut(s) 102
BglII AGATCT 1 cut(s) 432
Bme1390I CCNGG 3 cut(s) 243, 343, 442
Bme18I GGWCC 2 cut(s) 46, 61
BmgT120I GGNCC 2 cut(s) 46, 61
BmiI GGNNCC 3 cut(s) 48, 120, 369
BmrFI CCNGG 3 cut(s) 243, 343, 442
BmsI GCATC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 42
Bpu14I TTCGAA 1 cut(s) 544
BpuMI CCSGG 2 cut(s) 343, 442
BsaJI CCNNGG 1 cut(s) 114
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 357
Bse3DI GCAATG 3 cut(s) 31, 105, 498
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 193, 412
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMI GCAATG 3 cut(s) 31, 105, 498
BseMII CTCAG 2 cut(s) 23, 56
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 414
BshFI GGCC 1 cut(s) 440
BsiSI CCGG 2 cut(s) 342, 441
BslI CCNNNNNNNGG 1 cut(s) 184
BsmI GAATGC 2 cut(s) 134, 540
BsnI GGCC 1 cut(s) 440
Bsp119I TTCGAA 1 cut(s) 544
Bsp143I GATC 2 cut(s) 118, 432
BspACI CCGC 3 cut(s) 15, 503, 527
BspANI GGCC 1 cut(s) 440
BspCNI CTCAG 2 cut(s) 22, 55
BspLI GGNNCC 3 cut(s) 48, 120, 369
BspPI GGATC 2 cut(s) 113, 126
BspT104I TTCGAA 1 cut(s) 544
BsrDI GCAATG 3 cut(s) 31, 105, 498
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 118, 432
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 483
BstBI TTCGAA 1 cut(s) 544
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 9, 42
BstF5I GGATG 2 cut(s) 193, 412
BstKTI GATC 2 cut(s) 121, 435
BstMBI GATC 2 cut(s) 118, 432
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 3 cut(s) 241, 341, 440
BstX2I RGATCY 2 cut(s) 118, 432
BstYI RGATCY 2 cut(s) 118, 432
BsuRI GGCC 1 cut(s) 440
BtsCI GGATG 2 cut(s) 193, 412
BtsIMutI CAGTG 2 cut(s) 17, 364
Cac8I GCNNGC 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 46, 61
CsiI ACCWGGT 1 cut(s) 241
CviAII CATG 1 cut(s) 133
CviJI RGCY 4 cut(s) 5, 41, 346, 440
CviKI_1 RGCY 4 cut(s) 5, 41, 346, 440
DdeI CTNAG 2 cut(s) 9, 42
DpnI GATC 2 cut(s) 120, 434
DpnII GATC 2 cut(s) 118, 432
DraI TTTAAA 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 438
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 46, 61
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 136
FaiI YATR 7 cut(s) 31, 94, 134, 224, 239, 354, 384
FatI CATG 1 cut(s) 132
FblI GTMKAC 1 cut(s) 213
FokI GGATG 2 cut(s) 200, 419
FspBI CTAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 440
HapII CCGG 2 cut(s) 342, 441
Hin1II CATG 1 cut(s) 136
HincII GTYRAC 2 cut(s) 214, 268
HindII GTYRAC 2 cut(s) 214, 268
HinfI GANTC 2 cut(s) 18, 460
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 2 cut(s) 342, 441
HphI GGTGA 2 cut(s) 331, 425
Hpy166II GTNNAC 3 cut(s) 214, 268, 339
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 2 cut(s) 44, 122
Hpy8I GTNNAC 3 cut(s) 214, 268, 339
Hpy99I CGWCG 2 cut(s) 277, 301
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 24, 132, 280, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 2 cut(s) 9, 42
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 118, 432
LweI GCATC 1 cut(s) 216
MabI ACCWGGT 1 cut(s) 241
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 413
MalI GATC 2 cut(s) 120, 434
MboI GATC 2 cut(s) 118, 432
MboII GAAGA 1 cut(s) 500
MflI RGATCY 2 cut(s) 118, 432
MluCI AATT 5 cut(s) 158, 233, 325, 474, 547
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 6 cut(s) 118, 188, 256, 403, 475, 478
Mph1103I ATGCAT 1 cut(s) 134
MroXI GAANNNNTTC 2 cut(s) 195, 305
MseI TTAA 4 cut(s) 173, 267, 536, 550
MslI CAYNNNNRTG 1 cut(s) 503
MspI CCGG 2 cut(s) 342, 441
MspR9I CCNGG 3 cut(s) 243, 343, 442
MssI GTTTAAAC 1 cut(s) 174
Mva1269I GAATGC 2 cut(s) 134, 540
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 21
NciI CCSGG 2 cut(s) 343, 442
NdeII GATC 2 cut(s) 118, 432
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 3 cut(s) 48, 120, 369
NmuCI GTSAC 1 cut(s) 413
NsiI ATGCAT 1 cut(s) 134
NspI RCATGY 1 cut(s) 136
NspV TTCGAA 1 cut(s) 544
PaeI GCATGC 1 cut(s) 136
PctI GAATGC 2 cut(s) 134, 540
PdmI GAANNNNTTC 2 cut(s) 195, 305
PfeI GAWTC 1 cut(s) 460
PleI GAGTC 1 cut(s) 26
PmeI GTTTAAAC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 48, 120, 369
PspPI GGNCC 2 cut(s) 46, 61
PspPPI RGGWCCY 1 cut(s) 46
PsuI RGATCY 2 cut(s) 118, 432
RseI CAYNNNNRTG 1 cut(s) 503
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 4 cut(s) 173, 267, 536, 550
Sau3AI GATC 2 cut(s) 118, 432
Sau96I GGNCC 2 cut(s) 46, 61
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 3 cut(s) 243, 343, 442
SetI ASST 8 cut(s) 43, 66, 116, 180, 247, 267, 278, 423
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 544
SinI GGWCC 2 cut(s) 46, 61
SmiMI CAYNNNNRTG 1 cut(s) 503
SphI GCATGC 1 cut(s) 136
Sse9I AATT 5 cut(s) 158, 233, 325, 474, 547
SsiI CCGC 3 cut(s) 15, 503, 527
SspI AATATT 1 cut(s) 56
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 241, 341, 440
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 213, 544
TasI AATT 5 cut(s) 158, 233, 325, 474, 547
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 4 cut(s) 173, 267, 536, 550
Tru9I TTAA 4 cut(s) 173, 267, 536, 550
TscAI CASTG 2 cut(s) 17, 364
TseFI GTSAC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 2 cut(s) 204, 226
TspGWI ACGGA 1 cut(s) 457
TspRI CASTG 2 cut(s) 17, 364
VpaK11BI GGWCC 2 cut(s) 46, 61
XapI RAATTY 2 cut(s) 158, 233
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 2 cut(s) 195, 305
XspI CTAG 1 cut(s) 102
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.