Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8050558.1

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 349

Gene Structure 349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8050558.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgcaacaaaagtcaccatctttctgtgagcgcggaagtggttcagactactctgagtacacattggaaaagcctatattaagtgatagacctattttaccttgttcttgtgattgtgcttctcaactgccacataaccgctgtgacaaaatggtggttgtaagtacattgagaaatagtgacggaaacatactgagcacaagagcggcatcatcccgccgatcatttgaagatgatacaccaaaggcacctggattaatggttgattcttcaaaggaagagggaagcaaccaggactgccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

101

Amino Acids

11.09

Weight (kDa)

5.04

Isoelectric Point (pI)

69.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	206
AccII	CGCG	1 cut(s)	33
AciI	CCGC	4 cut(s)	33, 139, 206, 217
AfaI	GTAC	2 cut(s)	59, 166
AgsI	TTSAA	2 cut(s)	230, 273
AjnI	CCWGG	2 cut(s)	250, 291
Alw21I	GWGCWC	1 cut(s)	200
AseI	ATTAAT	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	200
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	252, 293
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	2 cut(s)	252, 293
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	252, 293
BmsI	GCATC	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	252, 293
BseGI	GGATG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	45, 185
Bsh1236I	CGCG	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	221
BspACI	CCGC	4 cut(s)	33, 139, 206, 217
BspCNI	CTCAG	2 cut(s)	46, 186
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	247
BsrBI	CCGCTC	1 cut(s)	206
BssMI	GATC	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	252, 293
Bst6I	CTCTTC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	54, 194
BstF5I	GGATG	1 cut(s)	212
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	221
BstNI	CCWGG	2 cut(s)	252, 293
BstSCI	CCNGG	2 cut(s)	250, 291
BstUI	CGCG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	212
CfoI	GCGC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	58, 165
CviJI	RGCY	1 cut(s)	73
CviKI_1	RGCY	1 cut(s)	73
CviQI	GTAC	2 cut(s)	58, 165
DdeI	CTNAG	2 cut(s)	54, 194
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	250, 291
FaiI	YATR	3 cut(s)	77, 135, 191
FauI	CCCGC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	207
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	266
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	46, 55
Hpy8I	GTNNAC	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	54, 194
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	221
LpnPI	CCDG	3 cut(s)	237, 264, 278
LweI	GCATC	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	12, 143, 179
MalI	GATC	1 cut(s)	223
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	1 cut(s)	221
MboII	GAAGA	3 cut(s)	242, 261, 290
MhlI	GDGCHC	1 cut(s)	200
MnlI	CCTC	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	2 cut(s)	80, 257
MspA1I	CMGCKG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	252, 293
MvaI	CCWGG	2 cut(s)	252, 293
MvnI	CGCG	1 cut(s)	33
NdeII	GATC	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	3 cut(s)	12, 143, 179
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	208
PshBI	ATTAAT	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	250, 291
PspGI	CCWGG	2 cut(s)	250, 291
PspN4I	GGNNCC	1 cut(s)	249
RsaI	GTAC	2 cut(s)	59, 166
RsaNI	GTAC	2 cut(s)	58, 165
SaqAI	TTAA	2 cut(s)	80, 257
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	252, 293
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	3 cut(s)	94, 103, 253
SfaNI	GCATC	1 cut(s)	218
SgeI	CNNG	7 cut(s)	44, 114, 120, 213, 228, 263, 264
SsiI	CCGC	4 cut(s)	33, 139, 206, 217
StyD4I	CCNGG	2 cut(s)	250, 291
TatI	WGTACW	2 cut(s)	57, 164
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	2 cut(s)	80, 257
Tru9I	TTAA	2 cut(s)	80, 257
TseFI	GTSAC	3 cut(s)	12, 143, 179
Tsp45I	GTSAC	3 cut(s)	12, 143, 179
TspGWI	ACGGA	1 cut(s)	198
VspI	ATTAAT	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.