Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003901.1

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Forward (+)

62531 .. 64302

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003901.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1522 bp

atgatggatgggcggcgtcattctgttgatatacctatctctaaagctctggtggctctgcggagggtgaggtctctaagggatccatcaactaattctatgaccaaattctcttctccggttgagaatgttaactgggaaacgaattcgggtaatgatatctctatgctattcttgaatactttccaagaaggtggttctgacaaccgtagttgtttgaggccaaggaattcggatttgtacggacaaagagaggattgcttagatgattttgaactaaacttgggtttagaaaagtctagattgatcctgcctgagaattcagagtgggttggaagcacagggaatcagggtgatgagtttgatctttcagggtcagataaggaagaggtttttagaaataaatcactgagtcagagatataagagcagtcatatggataaaggattggccatgacatgcgtcaagcctttggaggatgtggattatgaagaagccgtcagatcatcatgtttagaaagagtagatcagattgcatcaaaacgaaaatcacactgtaaaaatcgtgttgatttgtctggggcaattggtgatcgtaggagtcgaactggcagtccatgcccttcagcaggtgatgctctttcaagccatggtacaaccatttttgtaaacgaagaggttggtattggagatcatgatcatcctggtggtggaataagctgctgctggtcaagaacccctagattcagagaagctaacatttcctttgatgctgatgaccatcctttgttatacaagaatgtagatgatatttcactttatgaccacagaagcttgaaacgcataggaaatgaaaccaattcacagttagaaaagcccaggagtctgagtcagaaattcaggccagagtctttcatcgacttggtgggacaaaatgttgttgcaaggagtcgaactggcagtccatgcccttcagcaggtgatgctctttcaagccatggtacacccatttttgcaaacgaagaggttggtattggagatcatgatcatcctggtggtggaataagctgctgctggtcaagaacccctagattcagagaagctaacatttcttttgatgctgatgaccatcctttgttatacaaaaatgtagatgatatttcactttatgaccacagaagcttgaaacgcataggaaatgaaaccaattcacagttagaaaagcccaggagtctgagtcagaaattcaggccagagtctttcatcgacttggtgggacaaaatgttgttgcaaggtctcttttgggtgctatctctagaggaagaataacctcattctatcttttccatggtccgcaaggtacaggaaagacatcagcttcaagaatttttgctgcagcacttaattgtctttcactggaggagtataggccgtgtggtgtctgctgcgagtgtaatgtgtacttttctggaaacagcagagatatcaaggaaatagattctgtgagaatcaaccggagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

507

Amino Acids

56.41

Weight (kDa)

6.3

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	620, 968
Acc36I	ACCTGC	2 cut(s)	620, 968
AciI	CCGC	3 cut(s)	13, 61, 1355
AclWI	GGATC	3 cut(s)	77, 90, 301
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	7 cut(s)	107, 145, 229, 319, 896, 1244, 1386
AcuI	CTGAAG	2 cut(s)	609, 957
AcyI	GRCGYC	1 cut(s)	16
AfaI	GTAC	5 cut(s)	242, 655, 1003, 1363, 1463
AfiI	CCNNNNNNNGG	4 cut(s)	629, 710, 977, 1058
AgsI	TTSAA	7 cut(s)	178, 275, 645, 838, 993, 1186, 1383
AjnI	CCWGG	4 cut(s)	703, 878, 1051, 1226
AloI	GAACNNNNNNTCC	4 cut(s)	598, 630, 946, 978
AluBI	AGCT	8 cut(s)	47, 720, 755, 834, 1068, 1103, 1182, 1379
AluI	AGCT	8 cut(s)	47, 720, 755, 834, 1068, 1103, 1182, 1379
Alw26I	GTCTC	2 cut(s)	78, 1302
AlwI	GGATC	3 cut(s)	77, 90, 301
AoxI	GGCC	5 cut(s)	221, 450, 902, 1250, 1430
ApeKI	GCWGC	7 cut(s)	720, 723, 1068, 1071, 1394, 1397, 1446
ApoI	RAATTY	7 cut(s)	107, 145, 229, 319, 896, 1244, 1386
ArsI	GACNNNNNNTTYG	4 cut(s)	598, 630, 946, 978
Asp700I	GAANNNNTTC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	1352
AsuHPI	GGTGA	5 cut(s)	79, 365, 602, 644, 992
AvaII	GGWCC	1 cut(s)	1352
BalI	TGGCCA	1 cut(s)	452
BamHI	GGATCC	1 cut(s)	82
BbvI	GCAGC	7 cut(s)	707, 710, 1055, 1058, 1381, 1409, 1433
BccI	CCATC	4 cut(s)	2, 94, 789, 1137
BceAI	ACGGC	2 cut(s)	482, 1417
BciT130I	CCWGG	4 cut(s)	705, 880, 1053, 1228
BclI	TGATCA	2 cut(s)	697, 1045
BcoDI	GTCTC	2 cut(s)	78, 1302
BfaI	CTAG	4 cut(s)	300, 741, 1089, 1317
BfmI	CTRYAG	1 cut(s)	1395
BfuAI	ACCTGC	2 cut(s)	620, 968
BisI	GCNGC	8 cut(s)	14, 721, 724, 1069, 1072, 1395, 1398, 1447
BlsI	GCNGC	8 cut(s)	15, 722, 725, 1070, 1073, 1396, 1399, 1448
Bme1390I	CCNGG	4 cut(s)	705, 880, 1053, 1228
Bme18I	GGWCC	1 cut(s)	1352
BmgT120I	GGNCC	1 cut(s)	1352
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	4 cut(s)	705, 880, 1053, 1228
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	5 cut(s)	545, 625, 760, 973, 1108
BmuI	ACTGGG	1 cut(s)	145
BoxI	GACNNNNGTC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	1439
BsaBI	GATNNNNATC	4 cut(s)	696, 780, 1044, 1128
BsaHI	GRCGYC	1 cut(s)	16
BsaI	GGTCTC	2 cut(s)	78, 1302
BsaJI	CCNNGG	6 cut(s)	224, 649, 878, 997, 1226, 1348
BsaWI	WCCGGW	2 cut(s)	118, 1515
BsaXI	ACNNNNNCTCC	4 cut(s)	874, 904, 1222, 1252
Bsc4I	CCNNNNNNNGG	4 cut(s)	629, 710, 977, 1058
Bse1I	ACTGG	4 cut(s)	140, 613, 961, 1422
Bse8I	GATNNNNATC	4 cut(s)	696, 780, 1044, 1128
BseBI	CCWGG	4 cut(s)	705, 880, 1053, 1228
BseDI	CCNNGG	6 cut(s)	224, 649, 878, 997, 1226, 1348
BseGI	GGATG	6 cut(s)	13, 484, 700, 781, 1048, 1129
BseJI	GATNNNNATC	4 cut(s)	696, 780, 1044, 1128
BseLI	CCNNNNNNNGG	4 cut(s)	629, 710, 977, 1058
BseMII	CTCAG	4 cut(s)	306, 401, 878, 1226
BseNI	ACTGG	4 cut(s)	140, 613, 961, 1422
BseRI	GAGGAG	1 cut(s)	1436
BseXI	GCAGC	7 cut(s)	707, 710, 1055, 1058, 1381, 1409, 1433
BshFI	GGCC	5 cut(s)	223, 452, 904, 1252, 1432
BsiSI	CCGG	2 cut(s)	119, 1516
BslFI	GGGAC	2 cut(s)	942, 1290
BslI	CCNNNNNNNGG	4 cut(s)	629, 710, 977, 1058
BsmAI	GTCTC	2 cut(s)	78, 1302
BsmFI	GGGAC	2 cut(s)	942, 1290
BsnI	GGCC	5 cut(s)	223, 452, 904, 1252, 1432
Bso31I	GGTCTC	2 cut(s)	78, 1302
Bsp19I	CCATGG	3 cut(s)	649, 997, 1348
BspACI	CCGC	3 cut(s)	13, 61, 1355
BspANI	GGCC	5 cut(s)	223, 452, 904, 1252, 1432
BspCNI	CTCAG	4 cut(s)	307, 402, 879, 1227
BspHI	TCATGA	2 cut(s)	694, 1042
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	1399
BspMI	ACCTGC	2 cut(s)	620, 968
BspPI	GGATC	3 cut(s)	77, 90, 301
BspTNI	GGTCTC	2 cut(s)	78, 1302
BsrI	ACTGG	4 cut(s)	140, 613, 961, 1422
BssECI	CCNNGG	6 cut(s)	224, 649, 878, 997, 1226, 1348
BssNI	GRCGYC	1 cut(s)	16
BssT1I	CCWWGG	4 cut(s)	224, 649, 997, 1348
Bst2UI	CCWGG	4 cut(s)	705, 880, 1053, 1228
Bst4CI	ACNGT	4 cut(s)	209, 557, 867, 1215
Bst6I	CTCTTC	4 cut(s)	118, 381, 669, 1017
BstACI	GRCGYC	1 cut(s)	16
BstAPI	GCANNNNNTGC	4 cut(s)	618, 635, 966, 983
BstDEI	CTNAG	6 cut(s)	77, 262, 315, 410, 887, 1235
BstDSI	CCRYGG	3 cut(s)	649, 997, 1348
BstENI	CCTNNNNNAGG	2 cut(s)	627, 975
BstF5I	GGATG	6 cut(s)	13, 484, 700, 781, 1048, 1129
BstMAI	GTCTC	2 cut(s)	78, 1302
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 618, 635, 840, 966, 983, 1188
BstNI	CCWGG	4 cut(s)	705, 880, 1053, 1228
BstNSI	RCATGY	1 cut(s)	462
BstPAI	GACNNNNGTC	1 cut(s)	461
BstSCI	CCNGG	4 cut(s)	703, 878, 1051, 1226
BstSFI	CTRYAG	1 cut(s)	1395
BstV1I	GCAGC	7 cut(s)	707, 710, 1055, 1058, 1381, 1409, 1433
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	5 cut(s)	223, 452, 904, 1252, 1432
BtgI	CCRYGG	3 cut(s)	649, 997, 1348
BtsCI	GGATG	6 cut(s)	13, 484, 700, 781, 1048, 1129
BtsIMutI	CAGTG	3 cut(s)	407, 553, 1415
BveI	ACCTGC	2 cut(s)	620, 968
CciI	TCATGA	2 cut(s)	694, 1042
Cfr13I	GGNCC	1 cut(s)	1352
CseI	GACGC	2 cut(s)	5, 451
Csp6I	GTAC	5 cut(s)	241, 654, 1002, 1362, 1462
CviQI	GTAC	5 cut(s)	241, 654, 1002, 1362, 1462
DdeI	CTNAG	6 cut(s)	77, 262, 315, 410, 887, 1235
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	4 cut(s)	118, 381, 669, 1017
EarI	CTCTTC	4 cut(s)	118, 381, 669, 1017
Eco130I	CCWWGG	4 cut(s)	224, 649, 997, 1348
Eco31I	GGTCTC	2 cut(s)	78, 1302
Eco32I	GATATC	2 cut(s)	160, 1486
Eco47I	GGWCC	1 cut(s)	1352
Eco57I	CTGAAG	2 cut(s)	609, 957
EcoNI	CCTNNNNNAGG	2 cut(s)	627, 975
EcoRI	GAATTC	3 cut(s)	145, 229, 319
EcoRII	CCWGG	4 cut(s)	703, 878, 1051, 1226
EcoRV	GATATC	2 cut(s)	160, 1486
EcoT14I	CCWWGG	4 cut(s)	224, 649, 997, 1348
ErhI	CCWWGG	4 cut(s)	224, 649, 997, 1348
FaqI	GGGAC	2 cut(s)	942, 1290
FauNDI	CATATG	1 cut(s)	435
FbaI	TGATCA	2 cut(s)	697, 1045
Fnu4HI	GCNGC	8 cut(s)	14, 721, 724, 1069, 1072, 1395, 1398, 1447
FokI	GGATG	6 cut(s)	20, 491, 687, 768, 1035, 1116
Fsp4HI	GCNGC	8 cut(s)	14, 721, 724, 1069, 1072, 1395, 1398, 1447
FspBI	CTAG	4 cut(s)	300, 741, 1089, 1317
GluI	GCNGC	8 cut(s)	14, 721, 724, 1069, 1072, 1395, 1398, 1447
GsuI	CTGGAG	1 cut(s)	1439
HaeIII	GGCC	5 cut(s)	223, 452, 904, 1252, 1432
HapII	CCGG	2 cut(s)	119, 1516
HgaI	GACGC	2 cut(s)	5, 451
Hin1I	GRCGYC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	2 cut(s)	832, 1180
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	2 cut(s)	119, 1516
HphI	GGTGA	5 cut(s)	79, 365, 602, 644, 992
Hpy166II	GTNNAC	4 cut(s)	133, 670, 1004, 1462
Hpy188III	TCNNGA	9 cut(s)	175, 300, 695, 732, 1043, 1080, 1317, 1383, 1470
Hpy8I	GTNNAC	4 cut(s)	133, 670, 1004, 1462
HpyAV	CCTTC	3 cut(s)	185, 633, 981
HpyCH4III	ACNGT	4 cut(s)	209, 557, 867, 1215
HpyCH4V	TGCA	5 cut(s)	536, 944, 1016, 1292, 1397
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 618, 635, 840, 966, 983, 1188
HpyF3I	CTNAG	6 cut(s)	77, 262, 315, 410, 887, 1235
Hsp92I	GRCGYC	1 cut(s)	16
Ksp22I	TGATCA	2 cut(s)	697, 1045
KspAI	GTTAAC	1 cut(s)	133
Lsp1109I	GCAGC	7 cut(s)	707, 710, 1055, 1058, 1381, 1409, 1433
LweI	GCATC	5 cut(s)	545, 625, 760, 973, 1108
MaeI	CTAG	4 cut(s)	300, 741, 1089, 1317
MboII	GAAGA	6 cut(s)	105, 398, 503, 686, 1034, 1335
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	9 cut(s)	421, 610, 892, 898, 917, 958, 1240, 1246, 1265
MmeI	TCCRAC	1 cut(s)	313
Mox20I	TGGCCA	1 cut(s)	452
MroXI	GAANNNNTTC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	2 cut(s)	132, 1404
MslI	CAYNNNNRTG	2 cut(s)	705, 1053
Msp20I	TGGCCA	1 cut(s)	452
MspI	CCGG	2 cut(s)	119, 1516
MspR9I	CCNGG	4 cut(s)	705, 880, 1053, 1228
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	4 cut(s)	705, 880, 1053, 1228
MwoI	GCNNNNNNNGC	7 cut(s)	53, 618, 635, 840, 966, 983, 1188
NcoI	CCATGG	3 cut(s)	649, 997, 1348
NdeI	CATATG	1 cut(s)	435
NlaIV	GGNNCC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	462
PagI	TCATGA	2 cut(s)	694, 1042
PaqCI	CACCTGC	2 cut(s)	620, 968
PcsI	WCGNNNNNNNCGW	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	5 cut(s)	346, 744, 1092, 1499, 1509
PkrI	GCNGC	8 cut(s)	15, 722, 725, 1070, 1073, 1396, 1399, 1448
PleI	GAGTC	9 cut(s)	420, 609, 891, 897, 916, 957, 1239, 1245, 1264
PpsI	GAGTC	9 cut(s)	420, 609, 891, 897, 916, 957, 1239, 1245, 1264
PshAI	GACNNNNGTC	1 cut(s)	461
Psp6I	CCWGG	4 cut(s)	703, 878, 1051, 1226
PspGI	CCWGG	4 cut(s)	703, 878, 1051, 1226
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	1352
PstI	CTGCAG	1 cut(s)	1399
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	5 cut(s)	242, 655, 1003, 1363, 1463
RsaNI	GTAC	5 cut(s)	241, 654, 1002, 1362, 1462
RseI	CAYNNNNRTG	2 cut(s)	705, 1053
SaqAI	TTAA	2 cut(s)	132, 1404
SatI	GCNGC	8 cut(s)	14, 721, 724, 1069, 1072, 1395, 1398, 1447
Sau96I	GGNCC	1 cut(s)	1352
SchI	GAGTC	9 cut(s)	421, 610, 892, 898, 917, 958, 1240, 1246, 1265
ScrFI	CCNGG	4 cut(s)	705, 880, 1053, 1228
SfaNI	GCATC	5 cut(s)	545, 625, 760, 973, 1108
SfcI	CTRYAG	1 cut(s)	1395
SinI	GGWCC	1 cut(s)	1352
SmiMI	CAYNNNNRTG	2 cut(s)	705, 1053
SsiI	CCGC	3 cut(s)	13, 61, 1355
SspMI	CTAG	4 cut(s)	300, 741, 1089, 1317
StyD4I	CCNGG	4 cut(s)	703, 878, 1051, 1226
StyI	CCWWGG	4 cut(s)	224, 649, 997, 1348
TaaI	ACNGT	4 cut(s)	209, 557, 867, 1215
TaqI	TCGA	4 cut(s)	604, 918, 952, 1266
TatI	WGTACW	1 cut(s)	1461
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	5 cut(s)	346, 744, 1092, 1499, 1509
Tru1I	TTAA	2 cut(s)	132, 1404
Tru9I	TTAA	2 cut(s)	132, 1404
TscAI	CASTG	3 cut(s)	414, 560, 1422
TseI	GCWGC	7 cut(s)	720, 723, 1068, 1071, 1394, 1397, 1446
TspDTI	ATGAA	5 cut(s)	504, 867, 904, 1215, 1252
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	3 cut(s)	414, 560, 1422
VpaK11BI	GGWCC	1 cut(s)	1352
XagI	CCTNNNNNAGG	2 cut(s)	627, 975
XapI	RAATTY	7 cut(s)	107, 145, 229, 319, 896, 1244, 1386
XbaI	TCTAGA	2 cut(s)	299, 1316
XceI	RCATGY	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	4 cut(s)	300, 741, 1089, 1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.