Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000616.1

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

74504 .. 76652

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000616.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgcatgttgttccgaggtctcttttgggtgctgtctctagaggaagaataacctcattctatcttttccatggtccacaaggtacaggaaagacatcagcctcaagaatttttgctgcagcacttaattgtctttcactggaggagtacaggccgtgtggtctctgctgcgagtgtaatgtgtacttttctggaaacagcagagatatcaaggaaatagagtctgtgagaatcaaccggagagaccggtttaggtgtcttattatgaatgcagctacacctcccgtttcttcacggtttaaggttttcaacattgatgagtgccacttgatgcgtggggaaacatgggcgactattttgagtagcatcgataacctttctcaacatgttgtctttgtgatgatcactcctgatctggataagctgccgcggaatcagtatcacggtcccagagatatcacttcccaaagattaaggatggttgctttaaacttcattgctgccaaatcaaatggttcacttagggatgaagagatgatgcttgatcagctaagtttgcttggtaaaaaaatcacaatgggcttggcatacgagcttattggagctgtttctgatgatgaattactcgatttgctagatctggcattgtcatctgacacttctaatacagttttaagggcctgggagttgatgagatcaaggattgatccgatgcaacttatatcgcagttggcaaatcttattatggacatccttgctggtgaggaaggtggttctgaagtcctgaaacagttctctcgtaggcatacctggcagagcttcaagattcttgaccctacttcatgcaatgtcaacacatcagacaagttgggaatgcaaaaggatattgatgaacagttggaatccgtatggaagagagctatagatttatggcaatctaagtcattcaagaactttttgaggaaacaaggaagattgtcgtctctatttgtgaatcaaggtctcgctatagctgaattggaattctgccaccctgattatgtatccaaggctgagaagtcatggaaaatcattgcaagtgcactccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

363

Amino Acids

41.03

Weight (kDa)

8.04

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	430
AciI	CCGC	2 cut(s)	428, 430
AclWI	GGATC	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	108, 1022
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	3 cut(s)	85, 149, 185
AflIII	ACRYGT	1 cut(s)	385
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	310, 823, 949
AjnI	CCWGG	2 cut(s)	680, 809
AluBI	AGCT	8 cut(s)	275, 424, 550, 595, 605, 819, 920, 1013
AluI	AGCT	8 cut(s)	275, 424, 550, 595, 605, 819, 920, 1013
Alw21I	GWGCWC	1 cut(s)	1084
Alw26I	GTCTC	6 cut(s)	24, 40, 167, 237, 987, 1007
Alw44I	GTGCAC	1 cut(s)	1080
AlwI	GGATC	1 cut(s)	701
AoxI	GGCC	2 cut(s)	152, 678
ApaLI	GTGCAC	1 cut(s)	1080
ApeKI	GCWGC	6 cut(s)	116, 119, 168, 272, 424, 500
ApoI	RAATTY	2 cut(s)	108, 1022
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	791
AspS9I	GGNCC	3 cut(s)	74, 446, 678
AsuHPI	GGTGA	1 cut(s)	773
AvaII	GGWCC	2 cut(s)	74, 446
BaeGI	GKGCMC	1 cut(s)	1084
Bbv12I	GWGCWC	1 cut(s)	1084
BbvI	GCAGC	6 cut(s)	103, 131, 155, 284, 411, 487
BccI	CCATC	1 cut(s)	472
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	682, 811
BciVI	GTATCC	1 cut(s)	1054
BclI	TGATCA	2 cut(s)	402, 544
BcoDI	GTCTC	6 cut(s)	24, 40, 167, 237, 987, 1007
BfaI	CTAG	2 cut(s)	39, 635
BfmI	CTRYAG	3 cut(s)	117, 921, 1008
BfuI	GTATCC	1 cut(s)	1054
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	7 cut(s)	117, 120, 169, 273, 425, 428, 501
BlsI	GCNGC	7 cut(s)	118, 121, 170, 274, 426, 429, 502
Bme1390I	CCNGG	2 cut(s)	682, 811
Bme18I	GGWCC	2 cut(s)	74, 446
BmgT120I	GGNCC	3 cut(s)	74, 446, 678
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	2 cut(s)	682, 811
BmsI	GCATC	4 cut(s)	321, 375, 528, 702
BpmI	CTGGAG	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	88
Bsa29I	ATCGAT	1 cut(s)	369
BsaI	GGTCTC	4 cut(s)	24, 167, 237, 1007
BsaJI	CCNNGG	5 cut(s)	14, 70, 428, 681, 1047
BsaWI	WCCGGW	2 cut(s)	237, 246
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	3 cut(s)	495, 853, 1071
BseBI	CCWGG	2 cut(s)	682, 811
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	5 cut(s)	14, 70, 428, 681, 1047
BseGI	GGATG	3 cut(s)	483, 532, 750
BseMI	GCAATG	3 cut(s)	495, 853, 1071
BseMII	CTCAG	1 cut(s)	1044
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	6 cut(s)	103, 131, 155, 284, 411, 487
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	154, 680
BshTI	ACCGGT	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	1084
BsiSI	CCGG	2 cut(s)	238, 247
BslFI	GGGAC	1 cut(s)	432
BsmAI	GTCTC	6 cut(s)	24, 40, 167, 237, 987, 1007
BsmBI	CGTCTC	1 cut(s)	987
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	2 cut(s)	274, 879
BsnI	GGCC	2 cut(s)	154, 680
Bso31I	GGTCTC	4 cut(s)	24, 167, 237, 1007
Bsp1286I	GDGCHC	1 cut(s)	1084
Bsp143I	GATC	6 cut(s)	402, 412, 544, 637, 695, 706
Bsp19I	CCATGG	1 cut(s)	70
BspACI	CCGC	2 cut(s)	428, 430
BspANI	GGCC	2 cut(s)	154, 680
BspCNI	CTCAG	1 cut(s)	1045
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	701
BspTNI	GGTCTC	4 cut(s)	24, 167, 237, 1007
BsrDI	GCAATG	3 cut(s)	495, 853, 1071
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	5 cut(s)	14, 70, 428, 681, 1047
BssMI	GATC	6 cut(s)	402, 412, 544, 637, 695, 706
BssT1I	CCWWGG	2 cut(s)	70, 1047
Bst2UI	CCWGG	2 cut(s)	682, 811
Bst4CI	ACNGT	5 cut(s)	297, 446, 670, 792, 897
Bst6I	CTCTTC	2 cut(s)	525, 908
BstDEI	CTNAG	4 cut(s)	521, 551, 939, 1053
BstDSI	CCRYGG	2 cut(s)	70, 428
BstF5I	GGATG	3 cut(s)	483, 532, 750
BstFNI	CGCG	1 cut(s)	430
BstKTI	GATC	6 cut(s)	405, 415, 547, 640, 698, 709
BstMAI	GTCTC	6 cut(s)	24, 40, 167, 237, 987, 1007
BstMBI	GATC	6 cut(s)	402, 412, 544, 637, 695, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	547, 556, 811
BstNI	CCWGG	2 cut(s)	682, 811
BstNSI	RCATGY	2 cut(s)	8, 389
BstSCI	CCNGG	2 cut(s)	680, 809
BstSFI	CTRYAG	3 cut(s)	117, 921, 1008
BstSLI	GKGCMC	1 cut(s)	1084
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	6 cut(s)	103, 131, 155, 284, 411, 487
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
Bsu15I	ATCGAT	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	1054
BsuRI	GGCC	2 cut(s)	154, 680
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	2 cut(s)	70, 428
BtsCI	GGATG	3 cut(s)	483, 532, 750
BtsIMutI	CAGTG	1 cut(s)	137
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	3 cut(s)	74, 446, 678
Cfr42I	CCGCGG	1 cut(s)	431
ClaI	ATCGAT	1 cut(s)	369
Csp6I	GTAC	3 cut(s)	84, 148, 184
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	6 cut(s)	5, 71, 345, 386, 843, 1062
CviQI	GTAC	3 cut(s)	84, 148, 184
DdeI	CTNAG	4 cut(s)	521, 551, 939, 1053
DpnI	GATC	6 cut(s)	404, 414, 546, 639, 697, 708
DpnII	GATC	6 cut(s)	402, 412, 544, 637, 695, 706
DraI	TTTAAA	1 cut(s)	489
Eam1104I	CTCTTC	2 cut(s)	525, 908
EarI	CTCTTC	2 cut(s)	525, 908
Eco130I	CCWWGG	2 cut(s)	70, 1047
Eco31I	GGTCTC	4 cut(s)	24, 167, 237, 1007
Eco32I	GATATC	2 cut(s)	208, 457
Eco47I	GGWCC	2 cut(s)	74, 446
Eco57I	CTGAAG	1 cut(s)	798
EcoO109I	RGGNCCY	1 cut(s)	678
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	2 cut(s)	680, 809
EcoRV	GATATC	2 cut(s)	208, 457
EcoT14I	CCWWGG	2 cut(s)	70, 1047
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	70, 1047
Esp3I	CGTCTC	1 cut(s)	987
FaeI	CATG	6 cut(s)	8, 74, 348, 389, 846, 1065
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	6 cut(s)	4, 70, 344, 385, 842, 1061
FbaI	TGATCA	2 cut(s)	402, 544
Fnu4HI	GCNGC	7 cut(s)	117, 120, 169, 273, 425, 428, 501
FokI	GGATG	3 cut(s)	490, 539, 737
Fsp4HI	GCNGC	7 cut(s)	117, 120, 169, 273, 425, 428, 501
FspBI	CTAG	2 cut(s)	39, 635
GluI	GCNGC	7 cut(s)	117, 120, 169, 273, 425, 428, 501
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	154, 680
HapII	CCGG	2 cut(s)	238, 247
Hin1II	CATG	6 cut(s)	8, 74, 348, 389, 846, 1065
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	6 cut(s)	221, 231, 433, 826, 902, 994
HpaII	CCGG	2 cut(s)	238, 247
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	5 cut(s)	77, 184, 518, 853, 1082
Hpy188I	TCNGA	6 cut(s)	15, 613, 655, 711, 778, 862
Hpy188III	TCNNGA	9 cut(s)	39, 105, 192, 410, 416, 784, 823, 830, 949
Hpy8I	GTNNAC	5 cut(s)	77, 184, 518, 853, 1082
HpyAV	CCTTC	1 cut(s)	761
HpyCH4III	ACNGT	5 cut(s)	297, 446, 670, 792, 897
HpyCH4V	TGCA	8 cut(s)	4, 119, 272, 715, 846, 877, 1076, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	547, 556, 811
HpyF3I	CTNAG	4 cut(s)	521, 551, 939, 1053
Hsp92II	CATG	6 cut(s)	8, 74, 348, 389, 846, 1065
Ksp22I	TGATCA	2 cut(s)	402, 544
KspI	CCGCGG	1 cut(s)	431
Kzo9I	GATC	6 cut(s)	402, 412, 544, 637, 695, 706
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	6 cut(s)	103, 131, 155, 284, 411, 487
LweI	GCATC	4 cut(s)	321, 375, 528, 702
MaeI	CTAG	2 cut(s)	39, 635
MalI	GATC	6 cut(s)	404, 414, 546, 639, 697, 708
MboI	GATC	6 cut(s)	402, 412, 544, 637, 695, 706
MboII	GAAGA	5 cut(s)	57, 282, 542, 925, 984
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	1084
MluCI	AATT	5 cut(s)	108, 127, 620, 1016, 1022
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	879
MnlI	CCTC	8 cut(s)	9, 35, 64, 112, 136, 291, 757, 954
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	791
MseI	TTAA	5 cut(s)	126, 300, 473, 488, 674
MslI	CAYNNNNRTG	1 cut(s)	1087
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	2 cut(s)	238, 247
MspR9I	CCNGG	2 cut(s)	682, 811
Mva1269I	GAATGC	2 cut(s)	274, 879
MvaI	CCWGG	2 cut(s)	682, 811
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	3 cut(s)	547, 556, 811
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	6 cut(s)	402, 412, 544, 637, 695, 706
NlaIII	CATG	6 cut(s)	8, 74, 348, 389, 846, 1065
NlaIV	GGNNCC	1 cut(s)	448
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 389
PciI	ACATGT	1 cut(s)	385
PctI	GAATGC	2 cut(s)	274, 879
PdmI	GAANNNNTTC	1 cut(s)	791
PfeI	GAWTC	5 cut(s)	231, 433, 826, 902, 994
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	7 cut(s)	118, 121, 170, 274, 426, 429, 502
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PscI	ACATGT	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	680, 809
PspGI	CCWGG	2 cut(s)	680, 809
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	3 cut(s)	74, 446, 678
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	3 cut(s)	85, 149, 185
RsaNI	GTAC	3 cut(s)	84, 148, 184
RseI	CAYNNNNRTG	1 cut(s)	1087
SacII	CCGCGG	1 cut(s)	431
SaqAI	TTAA	5 cut(s)	126, 300, 473, 488, 674
SatI	GCNGC	7 cut(s)	117, 120, 169, 273, 425, 428, 501
Sau3AI	GATC	6 cut(s)	402, 412, 544, 637, 695, 706
Sau96I	GGNCC	3 cut(s)	74, 446, 678
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	2 cut(s)	682, 811
SduI	GDGCHC	1 cut(s)	1084
SfaNI	GCATC	4 cut(s)	321, 375, 528, 702
SfcI	CTRYAG	3 cut(s)	117, 921, 1008
Sfr303I	CCGCGG	1 cut(s)	431
SgrBI	CCGCGG	1 cut(s)	431
SinI	GGWCC	2 cut(s)	74, 446
SmiMI	CAYNNNNRTG	1 cut(s)	1087
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	5 cut(s)	108, 127, 620, 1016, 1022
SsiI	CCGC	2 cut(s)	428, 430
SspMI	CTAG	2 cut(s)	39, 635
StyD4I	CCNGG	2 cut(s)	680, 809
StyI	CCWWGG	2 cut(s)	70, 1047
TaaI	ACNGT	5 cut(s)	297, 446, 670, 792, 897
TaqI	TCGA	2 cut(s)	369, 627
TasI	AATT	5 cut(s)	108, 127, 620, 1016, 1022
TatI	WGTACW	2 cut(s)	147, 183
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	5 cut(s)	231, 433, 826, 902, 994
Tru1I	TTAA	5 cut(s)	126, 300, 473, 488, 674
Tru9I	TTAA	5 cut(s)	126, 300, 473, 488, 674
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	6 cut(s)	116, 119, 168, 272, 424, 500
TspDTI	ATGAA	6 cut(s)	281, 484, 543, 633, 831, 906
TspGWI	ACGGA	1 cut(s)	895
TspRI	CASTG	1 cut(s)	144
VneI	GTGCAC	1 cut(s)	1080
VpaK11BI	GGWCC	2 cut(s)	74, 446
XapI	RAATTY	2 cut(s)	108, 1022
XbaI	TCTAGA	1 cut(s)	38
XceI	RCATGY	2 cut(s)	8, 389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	791
XspI	CTAG	2 cut(s)	39, 635
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.