Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Forward (+)

16708539 .. 16710306

Gene Structure 1768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13870.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAAATGAGCTTCAAGAATCGTGCCACTTGTTCATGCAATTTAGAGACACCAGACAAGTTGGGCATGCGGAAGGATAGTGATGGAAAGTTGGAAGCCATATGGAAGAGAACTACAGATTTATGCCGATCCAATTCACTCAAGAATTTTCTTAAGAAACAGGGAAAATTGTCTTCCTTGCTTGTTGGTCAAGGTTTAGCAATAGCTGAATTGGAATTCTGCCATCCCGATTATGTATCTAAGGCTGAGAAGTCATGGAAGATCATTGCAAATTCACTTCAATCTATATGTGGTTGCAATGTGGATGGATCGATCAATCTTGTACCTTGTGCTTCTGATTCCAAGTATGCGAAAGTGAAGAAGTCATCTTTTACATTGTTCAGCTGTTCCCGCAGAATGCAGCAGAAATCACAATCATCTACAGAACGTGGAACTGAGTCAGACTATTCTGAGCACACTTCTGAAAAGCCTATGTTAAGCGACAGACCTACTTTACCTTGCTTGTCTGAGTGTTCTTATCGAGTGCCACATAACTGCAGTGACAAAATGGTGGTGGTAAGTACTTTGAGAAATAGTGAAGGAAATATTCTCAGCACAAGGACTGCCTCATCCCGCAGATCATTTGAAGACAACACATCAGAGGCACCTGGATTAGCGGTTGATTCTTCGAAGGACGATGGAAGCAATCATGAATGCCATGTTTTATCTTTTGAAGAACCTGAACATCAACCAAACTGTTTTCCTAGAACTTTGAGGCTTCAAAAGAAGTTCCGTTCATCAGATGCTTCTCAGACGACCTGTTGCACCAAACGACAAAACACGATTGCATTATCTAGCCCAAGCAAGACATCTTTTGGCACATGTCTCGTGGGAAATGATTCATATGTTTTCTGCAGCGGCGCTTGTAACAACACTGACAGCTGTATAGATGAGAATGCATTGAAGGAGAACTCAGGCTTGCTTTGTTGGAGAACCCCAACGCTTCACTTGGGAAAGGCTTGGCAGTTGAGACATAACCGACAAAACTCGAACCTAGGGTGTTGGGTTCTTCCCTGTGCAACTGCTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

357

Amino Acids

39.44

Weight (kDa)

8.64

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AciI	CCGC	5 cut(s)	70, 391, 613, 656, 897
AclWI	GGATC	2 cut(s)	123, 316
AcsI	RAATTY	3 cut(s)	145, 215, 271
AfaI	GTAC	2 cut(s)	324, 562
AflII	CTTAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	860
AgsI	TTSAA	6 cut(s)	16, 281, 626, 713, 761, 943
AjnI	CCWGG	1 cut(s)	646
AluBI	AGCT	4 cut(s)	12, 206, 384, 921
AluI	AGCT	4 cut(s)	12, 206, 384, 921
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	3 cut(s)	41, 869, 1003
AlwI	GGATC	2 cut(s)	123, 316
ApeKI	GCWGC	2 cut(s)	400, 894
ApoI	RAATTY	3 cut(s)	145, 215, 271
Asp700I	GAANNNNTTC	1 cut(s)	877
AspA2I	CCTAGG	1 cut(s)	1033
AspLEI	GCGC	1 cut(s)	902
AsuII	TTCGAA	1 cut(s)	668
AvrII	CCTAGG	1 cut(s)	1033
BanI	GGYRCC	1 cut(s)	643
BauI	CACGAG	1 cut(s)	866
BbsI	GAAGAC	2 cut(s)	165, 633
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	412, 906
BccI	CCATC	4 cut(s)	77, 231, 299, 671
BcgI	CGANNNNNNTGC	2 cut(s)	847, 881
BciT130I	CCWGG	1 cut(s)	648
BcoDI	GTCTC	3 cut(s)	41, 869, 1003
BfaI	CTAG	3 cut(s)	744, 834, 1034
BfmI	CTRYAG	4 cut(s)	114, 420, 535, 892
BfoI	RGCGCY	1 cut(s)	903
BfrI	CTTAAG	1 cut(s)	152
BisI	GCNGC	3 cut(s)	401, 895, 898
BlnI	CCTAGG	1 cut(s)	1033
BlsI	GCNGC	3 cut(s)	402, 896, 899
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	648
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	1 cut(s)	648
BmsI	GCATC	1 cut(s)	772
BpiI	GAAGAC	2 cut(s)	165, 633
Bpu14I	TTCGAA	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	1033
Bse3DI	GCAATG	2 cut(s)	264, 304
BseBI	CCWGG	1 cut(s)	648
BseCI	ATCGAT	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	1033
BseGI	GGATG	3 cut(s)	223, 310, 608
BseMI	GCAATG	2 cut(s)	264, 304
BseMII	CTCAG	7 cut(s)	237, 426, 441, 498, 604, 803, 966
BseXI	GCAGC	2 cut(s)	412, 906
BshNI	GGYRCC	1 cut(s)	643
BshVI	ATCGAT	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	456
BsmAI	GTCTC	3 cut(s)	41, 869, 1003
BsmI	GAATGC	3 cut(s)	402, 698, 940
Bsp119I	TTCGAA	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	5 cut(s)	128, 261, 308, 312, 617
BspACI	CCGC	5 cut(s)	70, 391, 613, 656, 897
BspCNI	CTCAG	7 cut(s)	238, 427, 442, 499, 603, 802, 965
BspDI	ATCGAT	1 cut(s)	311
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	645
BspMAI	CTGCAG	2 cut(s)	539, 896
BspPI	GGATC	2 cut(s)	123, 316
BspT104I	TTCGAA	1 cut(s)	668
BspT107I	GGYRCC	1 cut(s)	643
BspTI	CTTAAG	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	264, 304
BssECI	CCNNGG	1 cut(s)	1033
BssMI	GATC	5 cut(s)	128, 261, 308, 312, 617
BssSI	CACGAG	1 cut(s)	866
BssT1I	CCWWGG	1 cut(s)	1033
Bst2BI	CACGAG	1 cut(s)	866
Bst2UI	CCWGG	1 cut(s)	648
Bst4CI	ACNGT	1 cut(s)	737
Bst6I	CTCTTC	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	668
BstC8I	GCNNGC	2 cut(s)	68, 959
BstDEI	CTNAG	9 cut(s)	240, 246, 435, 450, 507, 590, 789, 952, 1065
BstF5I	GGATG	3 cut(s)	223, 310, 608
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	1 cut(s)	902
BstKTI	GATC	5 cut(s)	131, 264, 311, 315, 620
BstMAI	GTCTC	3 cut(s)	41, 869, 1003
BstMBI	GATC	5 cut(s)	128, 261, 308, 312, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	1 cut(s)	648
BstNSI	RCATGY	2 cut(s)	70, 864
BstSCI	CCNGG	1 cut(s)	646
BstSFI	CTRYAG	4 cut(s)	114, 420, 535, 892
BstV1I	GCAGC	2 cut(s)	412, 906
BstV2I	GAAGAC	2 cut(s)	165, 633
Bsu15I	ATCGAT	1 cut(s)	311
BsuTUI	ATCGAT	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	223, 310, 608
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	544, 912
Cac8I	GCNNGC	2 cut(s)	68, 959
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	902
ClaI	ATCGAT	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	323, 561
CviAII	CATG	6 cut(s)	36, 67, 255, 689, 698, 861
CviQI	GTAC	2 cut(s)	323, 561
DdeI	CTNAG	9 cut(s)	240, 246, 435, 450, 507, 590, 789, 952, 1065
DpnI	GATC	5 cut(s)	130, 263, 310, 314, 619
DpnII	GATC	5 cut(s)	128, 261, 308, 312, 617
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	1033
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	1033
EcoT22I	ATGCAT	1 cut(s)	940
ErhI	CCWWGG	1 cut(s)	1033
FaeI	CATG	6 cut(s)	39, 70, 258, 692, 701, 864
FatI	CATG	6 cut(s)	35, 66, 254, 688, 697, 860
FauI	CCCGC	2 cut(s)	398, 620
FauNDI	CATATG	2 cut(s)	101, 883
Fnu4HI	GCNGC	3 cut(s)	401, 895, 898
FokI	GGATG	3 cut(s)	210, 317, 595
Fsp4HI	GCNGC	3 cut(s)	401, 895, 898
FspBI	CTAG	3 cut(s)	744, 834, 1034
GlaI	GCGC	1 cut(s)	901
GluI	GCNGC	3 cut(s)	401, 895, 898
HaeII	RGCGCY	1 cut(s)	903
HhaI	GCGC	1 cut(s)	902
Hin1II	CATG	6 cut(s)	39, 70, 258, 692, 701, 864
Hin6I	GCGC	1 cut(s)	900
HinP1I	GCGC	1 cut(s)	900
HinfI	GANTC	5 cut(s)	19, 338, 437, 662, 878
Hpy188I	TCNGA	8 cut(s)	337, 442, 451, 463, 508, 640, 781, 792
Hpy188III	TCNNGA	4 cut(s)	16, 142, 227, 689
HpyAV	CCTTC	4 cut(s)	67, 572, 664, 937
HpyCH4III	ACNGT	1 cut(s)	737
HpyCH4IV	ACGT	1 cut(s)	427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	9 cut(s)	240, 246, 435, 450, 507, 590, 789, 952, 1065
HpySE526I	ACGT	1 cut(s)	427
Hsp92II	CATG	6 cut(s)	39, 70, 258, 692, 701, 864
HspAI	GCGC	1 cut(s)	900
Kzo9I	GATC	5 cut(s)	128, 261, 308, 312, 617
LpnPI	CCDG	8 cut(s)	66, 146, 633, 660, 732, 811, 939, 1066
Lsp1109I	GCAGC	2 cut(s)	412, 906
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	3 cut(s)	744, 834, 1034
MaeII	ACGT	1 cut(s)	427
MaeIII	GTNAC	2 cut(s)	539, 905
MalI	GATC	5 cut(s)	130, 263, 310, 314, 619
MboI	GATC	5 cut(s)	128, 261, 308, 312, 617
MboII	GAAGA	8 cut(s)	118, 165, 271, 370, 638, 657, 725, 1040
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	7 cut(s)	40, 133, 145, 167, 209, 215, 271
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	72, 947
MnlI	CCTC	3 cut(s)	616, 634, 747
Mph1103I	ATGCAT	1 cut(s)	940
MroXI	GAANNNNTTC	1 cut(s)	877
MseI	TTAA	2 cut(s)	153, 476
MspA1I	CMGCKG	3 cut(s)	384, 897, 921
MspCI	CTTAAG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	648
Mva1269I	GAATGC	3 cut(s)	402, 698, 940
MvaI	CCWGG	1 cut(s)	648
MwoI	GCNNNNNNNGC	1 cut(s)	390
NdeI	CATATG	2 cut(s)	101, 883
NdeII	GATC	5 cut(s)	128, 261, 308, 312, 617
NlaIII	CATG	6 cut(s)	39, 70, 258, 692, 701, 864
NlaIV	GGNNCC	1 cut(s)	645
NmuCI	GTSAC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	940
NspI	RCATGY	2 cut(s)	70, 864
NspV	TTCGAA	1 cut(s)	668
PaeI	GCATGC	1 cut(s)	70
PagI	TCATGA	1 cut(s)	688
PciI	ACATGT	1 cut(s)	860
PctI	GAATGC	3 cut(s)	402, 698, 940
PdmI	GAANNNNTTC	1 cut(s)	877
PfeI	GAWTC	4 cut(s)	19, 338, 662, 878
PkrI	GCNGC	3 cut(s)	402, 896, 899
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PscI	ACATGT	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	646
PspN4I	GGNNCC	1 cut(s)	645
PstI	CTGCAG	2 cut(s)	539, 896
PvuII	CAGCTG	2 cut(s)	384, 921
RsaI	GTAC	2 cut(s)	324, 562
RsaNI	GTAC	2 cut(s)	323, 561
SaqAI	TTAA	2 cut(s)	153, 476
SatI	GCNGC	3 cut(s)	401, 895, 898
Sau3AI	GATC	5 cut(s)	128, 261, 308, 312, 617
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	648
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	4 cut(s)	114, 420, 535, 892
SfuI	TTCGAA	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	140, 152
SmoI	CTYRAG	2 cut(s)	140, 152
SphI	GCATGC	1 cut(s)	70
Sse9I	AATT	7 cut(s)	40, 133, 145, 167, 209, 215, 271
SsiI	CCGC	5 cut(s)	70, 391, 613, 656, 897
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	3 cut(s)	744, 834, 1034
StyD4I	CCNGG	1 cut(s)	646
StyI	CCWWGG	1 cut(s)	1033
TaaI	ACNGT	1 cut(s)	737
TaiI	ACGT	1 cut(s)	430
TaqI	TCGA	4 cut(s)	311, 520, 668, 1028
TasI	AATT	7 cut(s)	40, 133, 145, 167, 209, 215, 271
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	1 cut(s)	900
TfiI	GAWTC	4 cut(s)	19, 338, 662, 878
Tru1I	TTAA	2 cut(s)	153, 476
Tru9I	TTAA	2 cut(s)	153, 476
TscAI	CASTG	2 cut(s)	544, 919
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	2 cut(s)	400, 894
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	4 cut(s)	24, 705, 765, 870
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	2 cut(s)	544, 919
Vha464I	CTTAAG	1 cut(s)	152
XapI	RAATTY	3 cut(s)	145, 215, 271
XceI	RCATGY	2 cut(s)	70, 864
XmaJI	CCTAGG	1 cut(s)	1033
XmnI	GAANNNNTTC	1 cut(s)	877
XspI	CTAG	3 cut(s)	744, 834, 1034
ZrmI	AGTACT	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.