Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

44128944 .. 44130957

Gene Structure 2014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG398000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGGAAACATCAAACATGGGCGACTATTTTGAGTAGCGTCGATAACCTTTCTCAACATGTTGTCTTTGTGATGTTCACTCCTGATCTGGATAAGCTGCCGCGGAATCAGTATCACGGTCCCAGAGATATCACTTCCCAAAGATTAAGGATGATTGGAGCTGTTTCTGATGATGAATTACTCGATTTGCTAGATCTGGCATTGTCATCTGACACTTCTAATACAGTTTTAAGGGCCTGGGAGTTGATGAGATCAAGGATTGATCCGATGCAACTTATATCGCAGTTGGCAAATCTTATTATGGACATCCTTGCTGGTGAGGAAGGTGGTTCTGAAGTCCAGAAACAGTTCTCTCGTAGGCATACCTGGCAGAGCTTCAAGATTCTTGACCCTACTTCATGCAATGTCAACACATCAGACAAGTTGGGAATGCAAAAGGATATTGATGAACAGTTGGAATCCGTATGGAAGAGAGCTATAGATTTATGGCAATCTAAGTCATTCAAGAACTTTTTGAGGAAACAAGGAAGATTGTCGTCTCTATTTGTGAATCAAGGTCTCGCTATAGCTGAATTGGAATTCTGCCACCCTGATTATGTATCCAAGGCTGAGAAGTCATGGAAAATCATTGCAAGTGCACTCCAATCTCTATTCGGTTGTAATGTGGAGATCAGGATCAATCTTGTACGTGCTACCGAGTCAAAGTATGCAAACGTGAAGAAGCCATCTTTTAGGTTGTTCAGCTGTTCCTGCAGAATGCAACAAAAGTCACCATCTTTCTGTGAGCGCGGAAGTGGTTCAGACTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

270

Amino Acids

30.75

Weight (kDa)

8.49

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaA_N-like_STI	PF23007	145 - 228	4.1e-30	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	103, 789
AciI	CCGC	3 cut(s)	101, 103, 789
AclWI	GGATC	2 cut(s)	257, 683
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	687
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	379, 505
AjnI	CCWGG	2 cut(s)	236, 365
AluBI	AGCT	6 cut(s)	97, 161, 375, 476, 569, 744
AluI	AGCT	6 cut(s)	97, 161, 375, 476, 569, 744
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	2 cut(s)	543, 563
Alw44I	GTGCAC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	257, 683
AoxI	GGCC	1 cut(s)	234
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	578
Asp700I	GAANNNNTTC	2 cut(s)	347, 796
AspLEI	GCGC	1 cut(s)	789
AspS9I	GGNCC	2 cut(s)	119, 234
AsuHPI	GGTGA	2 cut(s)	329, 762
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	2 cut(s)	733, 781
BciT130I	CCWGG	2 cut(s)	238, 367
BciVI	GTATCC	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	543, 563
BfaI	CTAG	1 cut(s)	191
BfmI	CTRYAG	3 cut(s)	477, 564, 751
BfuI	GTATCC	1 cut(s)	610
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	98, 101
BlsI	GCNGC	2 cut(s)	99, 102
Bme1390I	CCNGG	2 cut(s)	238, 367
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	119, 234
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	238, 367
BmsI	GCATC	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	689
BsaBI	GATNNNNATC	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	3 cut(s)	101, 237, 603
Bse3DI	GCAATG	2 cut(s)	409, 627
Bse8I	GATNNNNATC	1 cut(s)	674
BseBI	CCWGG	2 cut(s)	238, 367
BseDI	CCNNGG	3 cut(s)	101, 237, 603
BseGI	GGATG	2 cut(s)	156, 306
BseJI	GATNNNNATC	1 cut(s)	674
BseMI	GCAATG	2 cut(s)	409, 627
BseMII	CTCAG	1 cut(s)	600
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	1 cut(s)	84
Bsh1236I	CGCG	2 cut(s)	103, 789
BshFI	GGCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	543, 563
BsmBI	CGTCTC	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	2 cut(s)	435, 762
BsnI	GGCC	1 cut(s)	236
Bso31I	GGTCTC	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	6 cut(s)	85, 193, 251, 262, 669, 675
BspACI	CCGC	3 cut(s)	101, 103, 789
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	601
BspFNI	CGCG	2 cut(s)	103, 789
BspLI	GGNNCC	1 cut(s)	121
BspMAI	CTGCAG	1 cut(s)	755
BspPI	GGATC	2 cut(s)	257, 683
BspTNI	GGTCTC	1 cut(s)	563
BsrDI	GCAATG	2 cut(s)	409, 627
BssECI	CCNNGG	3 cut(s)	101, 237, 603
BssMI	GATC	6 cut(s)	85, 193, 251, 262, 669, 675
BssT1I	CCWWGG	1 cut(s)	603
Bst2UI	CCWGG	2 cut(s)	238, 367
Bst4CI	ACNGT	4 cut(s)	119, 226, 348, 453
Bst6I	CTCTTC	1 cut(s)	464
BstBAI	YACGTR	1 cut(s)	689
BstDEI	CTNAG	2 cut(s)	495, 609
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	2 cut(s)	156, 306
BstFNI	CGCG	2 cut(s)	103, 789
BstHHI	GCGC	1 cut(s)	789
BstKTI	GATC	6 cut(s)	88, 196, 254, 265, 672, 678
BstMAI	GTCTC	2 cut(s)	543, 563
BstMBI	GATC	6 cut(s)	85, 193, 251, 262, 669, 675
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 750
BstNI	CCWGG	2 cut(s)	238, 367
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	236, 365
BstSFI	CTRYAG	3 cut(s)	477, 564, 751
BstSLI	GKGCMC	1 cut(s)	640
BstUI	CGCG	2 cut(s)	103, 789
BstV1I	GCAGC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	610
BsuRI	GGCC	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	156, 306
CfoI	GCGC	1 cut(s)	789
Cfr13I	GGNCC	2 cut(s)	119, 234
Cfr42I	CCGCGG	1 cut(s)	104
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	686
CviAII	CATG	4 cut(s)	18, 59, 399, 618
CviJI	RGCY	9 cut(s)	97, 161, 236, 375, 476, 569, 608, 724, 744
CviKI_1	RGCY	9 cut(s)	97, 161, 236, 375, 476, 569, 608, 724, 744
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	2 cut(s)	495, 609
DpnI	GATC	6 cut(s)	87, 195, 253, 264, 671, 677
DpnII	GATC	6 cut(s)	85, 193, 251, 262, 669, 675
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	563
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	236, 365
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	603
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	4 cut(s)	21, 62, 402, 621
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	4 cut(s)	17, 58, 398, 617
Fnu4HI	GCNGC	2 cut(s)	98, 101
FokI	GGATG	2 cut(s)	163, 293
Fsp4HI	GCNGC	2 cut(s)	98, 101
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	788
GluI	GCNGC	2 cut(s)	98, 101
HaeIII	GGCC	1 cut(s)	236
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	789
Hin1II	CATG	4 cut(s)	21, 62, 402, 621
Hin6I	GCGC	1 cut(s)	787
HinP1I	GCGC	1 cut(s)	787
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	5 cut(s)	106, 382, 458, 550, 698
HphI	GGTGA	2 cut(s)	329, 762
Hpy166II	GTNNAC	3 cut(s)	78, 409, 638
Hpy188I	TCNGA	6 cut(s)	169, 211, 267, 334, 418, 802
Hpy188III	TCNNGA	8 cut(s)	83, 89, 340, 379, 386, 505, 673, 810
Hpy8I	GTNNAC	3 cut(s)	78, 409, 638
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	4 cut(s)	119, 226, 348, 453
HpyCH4IV	ACGT	2 cut(s)	688, 714
HpyCH4V	TGCA	8 cut(s)	271, 402, 433, 632, 638, 710, 753, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 750
HpyF3I	CTNAG	2 cut(s)	495, 609
HpySE526I	ACGT	2 cut(s)	688, 714
Hsp92II	CATG	4 cut(s)	21, 62, 402, 621
HspAI	GCGC	1 cut(s)	787
KspI	CCGCGG	1 cut(s)	104
Kzo9I	GATC	6 cut(s)	85, 193, 251, 262, 669, 675
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	2 cut(s)	688, 714
MaeIII	GTNAC	1 cut(s)	768
MalI	GATC	6 cut(s)	87, 195, 253, 264, 671, 677
MboI	GATC	6 cut(s)	85, 193, 251, 262, 669, 675
MboII	GAAGA	3 cut(s)	481, 540, 730
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	3 cut(s)	176, 572, 578
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	2 cut(s)	313, 510
MroXI	GAANNNNTTC	2 cut(s)	347, 796
MseI	TTAA	2 cut(s)	146, 230
MspA1I	CMGCKG	2 cut(s)	103, 744
MspR9I	CCNGG	2 cut(s)	238, 367
Mva1269I	GAATGC	2 cut(s)	435, 762
MvaI	CCWGG	2 cut(s)	238, 367
MvnI	CGCG	2 cut(s)	103, 789
MwoI	GCNNNNNNNGC	2 cut(s)	367, 750
NdeII	GATC	6 cut(s)	85, 193, 251, 262, 669, 675
NlaIII	CATG	4 cut(s)	21, 62, 402, 621
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	768
NspI	RCATGY	1 cut(s)	62
PciI	ACATGT	1 cut(s)	58
PctI	GAATGC	2 cut(s)	435, 762
PdmI	GAANNNNTTC	2 cut(s)	347, 796
PfeI	GAWTC	4 cut(s)	106, 382, 458, 550
PkrI	GCNGC	2 cut(s)	99, 102
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
Ppu21I	YACGTR	1 cut(s)	689
PscI	ACATGT	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	236, 365
PspGI	CCWGG	2 cut(s)	236, 365
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	119, 234
PstI	CTGCAG	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	744
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
SacII	CCGCGG	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	146, 230
SatI	GCNGC	2 cut(s)	98, 101
Sau3AI	GATC	6 cut(s)	85, 193, 251, 262, 669, 675
Sau96I	GGNCC	2 cut(s)	119, 234
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	2 cut(s)	238, 367
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	3 cut(s)	477, 564, 751
Sfr303I	CCGCGG	1 cut(s)	104
SgrBI	CCGCGG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	119
Sse9I	AATT	3 cut(s)	176, 572, 578
SsiI	CCGC	3 cut(s)	101, 103, 789
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	236, 365
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	4 cut(s)	119, 226, 348, 453
TaiI	ACGT	2 cut(s)	691, 717
TaqI	TCGA	2 cut(s)	42, 183
TasI	AATT	3 cut(s)	176, 572, 578
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	4 cut(s)	106, 382, 458, 550
Tru1I	TTAA	2 cut(s)	146, 230
Tru9I	TTAA	2 cut(s)	146, 230
TseFI	GTSAC	1 cut(s)	768
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	768
TspDTI	ATGAA	3 cut(s)	189, 387, 462
TspGWI	ACGGA	1 cut(s)	451
VneI	GTGCAC	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	1 cut(s)	62
XmnI	GAANNNNTTC	2 cut(s)	347, 796
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.