Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

58375464 .. 58377527

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG444400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATGGGCTTGGCATACGAGCTTATTGGAGCTGTTTCTGATGCTCGATTTGCTAGATCTGGCATTATCAAGGAAGGTGGTTCTGAAGTCCAGAAACAGTTCTCTCGTAGGCATACCTCTGAAATGGACCTCCAGAAACTGAGTCATGCATTGAAAATATTCTCTGAAACTGAGAAGCAATTAAGGGTATCCAAGAATCAAACAACATGGCTTACTGCAGCTCTATTGCAGCTAAGCTCTGCGGAATCCTCCTCCTCATTGGATGCTAGTGAAACAAAGAGGAAGAGCTTCAAGATTCTTGACCCTACTTCATGCAATGTCAACACATCAGACAAGTTGGGAATGCAAAAGGATATTGATGAACAGTTGGAATCCGTATGGAAGAGAGCTATAGATTTATGCCAATCCAAGTCATTCAAGAACTTTTTGAGGAAAAAAGGAAGATTGTCGTCTCTATTTGTGAATCAAGGTCTCGCTATAGCTGAATTGGAATTCTGCCACCCTGATTATGTATCCAAGGCTGAGAAGTCATGGAAAATCATTGCAAGTGCACTCCAATCTCTATTCGGTTGTAATGTGGAGATCAGGATCAATCTTGTACGTGCTACCGAGTCAAAGTATGCAAACGTGAAGAAGCCATCTTTTAGGTTGTTCAGCTGTTCCCGCAGAAAGCAACAAAAGTCACCATCTTTCTGTGAGCGCGGAAGTGGTTCAGACTATTCTGAGTACACATCGGAAAAGCCTATATTAAGTGATGGACGTATTTTACCGTGTTCCTGTGATTGTGCTTCTCAACTGCCACATAACTGCTGTGACAAGATGGTGGTTGTAAGCACATTGAGAAATAGTGAAGTTAACGTACTGAGCACAAGAGCGGCCTCATCCCGCAGATCGTTTGAAGACGATACACCAAAGGCACCTGGATTAATGTTTGATTCTTCAAAGGAAGAGGGAAGCAACCAGGACTGCCAGGTTTTATCTTTTCATCAACCTGAACATCAACCAAGGTGTTTCCCGAGAACTCTTGAGGATTCAAAAGAAGTTGTGTTCCACAGTTGCTACTCAGGTGACTTGTTGCACCAAACTACAAAACAAGTTTGCAATCCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

383

Amino Acids

42.95

Weight (kDa)

8.8

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaA_N-like_STI	PF23007	129 - 212	3.3e-31	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	955
AccBSI	CCGCTC	1 cut(s)	914
AccII	CGCG	1 cut(s)	741
AciI	CCGC	5 cut(s)	281, 703, 741, 914, 925
AclWI	GGATC	1 cut(s)	635
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	3 cut(s)	639, 767, 900
AgsI	TTSAA	6 cut(s)	193, 331, 457, 938, 981, 1074
AjnI	CCWGG	3 cut(s)	958, 999, 1008
Alw21I	GWGCWC	2 cut(s)	592, 908
Alw26I	GTCTC	2 cut(s)	495, 515
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	1054
AoxI	GGCC	1 cut(s)	915
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	2 cut(s)	257, 268
ApoI	RAATTY	1 cut(s)	530
AseI	ATTAAT	1 cut(s)	965
Asp700I	GAANNNNTTC	4 cut(s)	137, 197, 326, 748
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	714, 1118
AvaI	CYCGRG	1 cut(s)	1054
AvaII	GGWCC	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	955
BarI	GAAGNNNNNNTAC	2 cut(s)	882, 914
BbsI	GAAGAC	1 cut(s)	945
Bbv12I	GWGCWC	2 cut(s)	592, 908
BbvI	GCAGC	2 cut(s)	269, 280
BccI	CCATC	4 cut(s)	685, 733, 788, 853
BciT130I	CCWGG	3 cut(s)	960, 1001, 1010
BciVI	GTATCC	2 cut(s)	238, 562
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	495, 515
BfaI	CTAG	3 cut(s)	93, 306, 1150
BfmI	CTRYAG	3 cut(s)	255, 429, 516
BfuI	GTATCC	2 cut(s)	238, 562
BglII	AGATCT	1 cut(s)	95
BisI	GCNGC	3 cut(s)	258, 269, 915
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	3 cut(s)	259, 270, 916
Bme1390I	CCNGG	3 cut(s)	960, 1001, 1010
Bme18I	GGWCC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	1054
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	957
BmrFI	CCNGG	3 cut(s)	960, 1001, 1010
BmsI	GCATC	2 cut(s)	70, 292
BpiI	GAAGAC	1 cut(s)	945
BpmI	CTGGAG	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	1085
BsaAI	YACGTR	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	626
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	2 cut(s)	555, 1043
Bse3DI	GCAATG	2 cut(s)	361, 579
Bse8I	GATNNNNATC	1 cut(s)	626
BseBI	CCWGG	3 cut(s)	960, 1001, 1010
BseDI	CCNNGG	2 cut(s)	555, 1043
BseGI	GGATG	2 cut(s)	307, 920
BseJI	GATNNNNATC	1 cut(s)	626
BseMI	GCAATG	2 cut(s)	361, 579
BseMII	CTCAG	6 cut(s)	170, 201, 552, 753, 893, 1116
BseRI	GAGGAG	2 cut(s)	280, 283
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	2 cut(s)	269, 280
Bsh1236I	CGCG	1 cut(s)	741
BshFI	GGCC	1 cut(s)	917
BshNI	GGYRCC	1 cut(s)	955
BsiHKAI	GWGCWC	2 cut(s)	592, 908
BsiHKCI	CYCGRG	1 cut(s)	1054
BsmAI	GTCTC	2 cut(s)	495, 515
BsmBI	CGTCTC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	917
Bso31I	GGTCTC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	1054
Bsp1286I	GDGCHC	2 cut(s)	592, 908
Bsp143I	GATC	5 cut(s)	10, 95, 621, 627, 929
Bsp1720I	GCTNAGC	1 cut(s)	272
BspACI	CCGC	5 cut(s)	281, 703, 741, 914, 925
BspANI	GGCC	1 cut(s)	917
BspCNI	CTCAG	6 cut(s)	171, 202, 553, 754, 894, 1115
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	957
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	1 cut(s)	635
BspQI	GCTCTTC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	955
BspTNI	GGTCTC	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	914
BsrDI	GCAATG	2 cut(s)	361, 579
BssECI	CCNNGG	2 cut(s)	555, 1043
BssMI	GATC	5 cut(s)	10, 95, 621, 627, 929
BssT1I	CCWWGG	2 cut(s)	555, 1043
Bst2UI	CCWGG	3 cut(s)	960, 1001, 1010
Bst4CI	ACNGT	4 cut(s)	138, 405, 810, 1094
Bst6I	CTCTTC	3 cut(s)	317, 416, 981
BstBAI	YACGTR	1 cut(s)	641
BstDEI	CTNAG	8 cut(s)	17, 179, 210, 272, 561, 762, 902, 1102
BstF5I	GGATG	2 cut(s)	307, 920
BstFNI	CGCG	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	5 cut(s)	13, 98, 624, 630, 932
BstMAI	GTCTC	2 cut(s)	495, 515
BstMBI	GATC	5 cut(s)	10, 95, 621, 627, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 22, 89, 702
BstNI	CCWGG	3 cut(s)	960, 1001, 1010
BstSCI	CCNGG	3 cut(s)	958, 999, 1008
BstSFI	CTRYAG	3 cut(s)	255, 429, 516
BstSLI	GKGCMC	1 cut(s)	592
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	2 cut(s)	269, 280
BstV2I	GAAGAC	1 cut(s)	945
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BsuI	GTATCC	2 cut(s)	238, 562
BsuRI	GGCC	1 cut(s)	917
BtsCI	GGATG	2 cut(s)	307, 920
CaiI	CAGNNNCTG	1 cut(s)	178
CfoI	GCGC	1 cut(s)	741
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	638, 766, 899
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	4 cut(s)	185, 246, 351, 570
CviQI	GTAC	3 cut(s)	638, 766, 899
DdeI	CTNAG	8 cut(s)	17, 179, 210, 272, 561, 762, 902, 1102
DpnI	GATC	5 cut(s)	12, 97, 623, 629, 931
DpnII	GATC	5 cut(s)	10, 95, 621, 627, 929
Eam1104I	CTCTTC	3 cut(s)	317, 416, 981
EarI	CTCTTC	3 cut(s)	317, 416, 981
Eco130I	CCWWGG	2 cut(s)	555, 1043
Eco31I	GGTCTC	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	1054
EcoRI	GAATTC	1 cut(s)	530
EcoRII	CCWGG	3 cut(s)	958, 999, 1008
EcoT14I	CCWWGG	2 cut(s)	555, 1043
EcoT22I	ATGCAT	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	555, 1043
Esp3I	CGTCTC	1 cut(s)	495
FaeI	CATG	4 cut(s)	188, 249, 354, 573
FatI	CATG	4 cut(s)	184, 245, 350, 569
FauI	CCCGC	2 cut(s)	710, 932
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	3 cut(s)	258, 269, 915
FokI	GGATG	2 cut(s)	314, 907
Fsp4HI	GCNGC	3 cut(s)	258, 269, 915
FspBI	CTAG	3 cut(s)	93, 306, 1150
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	3 cut(s)	258, 269, 915
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	917
HhaI	GCGC	1 cut(s)	741
Hin1II	CATG	4 cut(s)	188, 249, 354, 573
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HincII	GTYRAC	2 cut(s)	361, 895
HindII	GTYRAC	2 cut(s)	361, 895
HinfI	GANTC	9 cut(s)	181, 235, 284, 334, 410, 502, 650, 974, 1070
HpaI	GTTAAC	1 cut(s)	895
HphI	GGTGA	2 cut(s)	714, 1118
Hpy166II	GTNNAC	4 cut(s)	361, 590, 768, 895
Hpy188I	TCNGA	8 cut(s)	79, 124, 160, 205, 370, 754, 763, 775
Hpy188III	TCNNGA	8 cut(s)	130, 172, 331, 338, 457, 625, 1054, 1064
Hpy8I	GTNNAC	4 cut(s)	361, 590, 768, 895
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	4 cut(s)	138, 405, 810, 1094
HpyCH4IV	ACGT	4 cut(s)	640, 666, 799, 897
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 22, 89, 702
HpyF3I	CTNAG	8 cut(s)	17, 179, 210, 272, 561, 762, 902, 1102
HpySE526I	ACGT	4 cut(s)	640, 666, 799, 897
Hsp92II	CATG	4 cut(s)	188, 249, 354, 573
HspAI	GCGC	1 cut(s)	739
Ksp22I	TGATCA	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	895
Kzo9I	GATC	5 cut(s)	10, 95, 621, 627, 929
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	2 cut(s)	269, 280
LweI	GCATC	2 cut(s)	70, 292
MaeI	CTAG	3 cut(s)	93, 306, 1150
MaeII	ACGT	4 cut(s)	640, 666, 799, 897
MaeIII	GTNAC	3 cut(s)	720, 851, 1106
MalI	GATC	5 cut(s)	12, 97, 623, 629, 931
MbiI	CCGCTC	1 cut(s)	914
MboI	GATC	5 cut(s)	10, 95, 621, 627, 929
MboII	GAAGA	7 cut(s)	334, 433, 492, 682, 950, 969, 998
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	2 cut(s)	592, 908
MluCI	AATT	3 cut(s)	218, 524, 530
MlyI	GAGTC	2 cut(s)	190, 659
MmeI	TCCRAC	1 cut(s)	387
Mph1103I	ATGCAT	1 cut(s)	190
MroXI	GAANNNNTTC	4 cut(s)	137, 197, 326, 748
MseI	TTAA	4 cut(s)	221, 788, 894, 965
MspA1I	CMGCKG	1 cut(s)	696
MspR9I	CCNGG	3 cut(s)	960, 1001, 1010
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	3 cut(s)	960, 1001, 1010
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	4 cut(s)	13, 22, 89, 702
NdeII	GATC	5 cut(s)	10, 95, 621, 627, 929
NlaIII	CATG	4 cut(s)	188, 249, 354, 573
NlaIV	GGNNCC	1 cut(s)	957
NmuCI	GTSAC	3 cut(s)	720, 851, 1106
NsiI	ATGCAT	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	317
PctI	GAATGC	1 cut(s)	387
PdmI	GAANNNNTTC	4 cut(s)	137, 197, 326, 748
PfeI	GAWTC	7 cut(s)	235, 284, 334, 410, 502, 974, 1070
PkrI	GCNGC	3 cut(s)	259, 270, 916
PleI	GAGTC	2 cut(s)	189, 658
PpsI	GAGTC	2 cut(s)	189, 658
Ppu21I	YACGTR	1 cut(s)	641
PshBI	ATTAAT	1 cut(s)	965
Psp6I	CCWGG	3 cut(s)	958, 999, 1008
PspGI	CCWGG	3 cut(s)	958, 999, 1008
PspN4I	GGNNCC	1 cut(s)	957
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	696
RsaI	GTAC	3 cut(s)	639, 767, 900
RsaNI	GTAC	3 cut(s)	638, 766, 899
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	4 cut(s)	221, 788, 894, 965
SatI	GCNGC	3 cut(s)	258, 269, 915
Sau3AI	GATC	5 cut(s)	10, 95, 621, 627, 929
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	190, 659
ScrFI	CCNGG	3 cut(s)	960, 1001, 1010
SduI	GDGCHC	2 cut(s)	592, 908
SfaNI	GCATC	2 cut(s)	70, 292
SfcI	CTRYAG	3 cut(s)	255, 429, 516
SinI	GGWCC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	1064
SmoI	CTYRAG	1 cut(s)	1064
Sse9I	AATT	3 cut(s)	218, 524, 530
SsiI	CCGC	5 cut(s)	281, 703, 741, 914, 925
SspI	AATATT	1 cut(s)	198
SspMI	CTAG	3 cut(s)	93, 306, 1150
StyD4I	CCNGG	3 cut(s)	958, 999, 1008
StyI	CCWWGG	2 cut(s)	555, 1043
TaaI	ACNGT	4 cut(s)	138, 405, 810, 1094
TaiI	ACGT	4 cut(s)	643, 669, 802, 900
TaqI	TCGA	1 cut(s)	85
TasI	AATT	3 cut(s)	218, 524, 530
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	1 cut(s)	917
TfiI	GAWTC	7 cut(s)	235, 284, 334, 410, 502, 974, 1070
Tru1I	TTAA	4 cut(s)	221, 788, 894, 965
Tru9I	TTAA	4 cut(s)	221, 788, 894, 965
TseFI	GTSAC	3 cut(s)	720, 851, 1106
TseI	GCWGC	2 cut(s)	257, 268
Tsp45I	GTSAC	3 cut(s)	720, 851, 1106
TspDTI	ATGAA	3 cut(s)	339, 414, 1013
TspGWI	ACGGA	1 cut(s)	403
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	166
VspI	ATTAAT	1 cut(s)	965
XapI	RAATTY	1 cut(s)	530
XmnI	GAANNNNTTC	4 cut(s)	137, 197, 326, 748
XspI	CTAG	3 cut(s)	93, 306, 1150
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.