Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

24981827 .. 24983812

Gene Structure 1986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCGAGAGCTGGACTCCTGGCAGGGTATGTGCAATGCAGTCTCGGTTTTGGTTTTCAAGATGTGCATAATGGCAGTCAACCTTCATCTCGTAGAAGTTTTGGCTCGAGTACTAGTGATAATGATCGCCTGCGTCAACAGGGTGAACCACCTACATACTCTTTTGTAGGAATGCATTGCATCTTTGATCAGTGCAGAGCCTCGGTTACTGTTTTGAAGTTTGGGCACATGAGCTCAGATATGCTTGCGTATGGAGCATCAGATGGAACCTTGACAATATGCACTGTCTCTGATCCTCCTTCAATTCTCAAGCATCTGAATGGTCACTCCAAAGATGTTACAGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

116

Amino Acids

12.45

Weight (kDa)

7.73

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	287
AfaI	GTAC	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	59, 217, 303
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	2 cut(s)	11, 234
AluI	AGCT	2 cut(s)	11, 234
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	2 cut(s)	47, 292
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	236
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	47, 292
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	1 cut(s)	114
BmcAI	AGTACT	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	3 cut(s)	189, 266, 322
BplI	GAGNNNNNCTC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	201
Bse3DI	GCAATG	2 cut(s)	41, 175
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	201
BseJI	GATNNNNATC	1 cut(s)	123
BseMI	GCAATG	2 cut(s)	41, 175
BseMII	CTCAG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	228
BsgI	GTGCAG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	106
BsmAI	GTCTC	2 cut(s)	47, 292
BsmI	GAATGC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	228, 236
Bsp143I	GATC	3 cut(s)	124, 187, 292
BspCNI	CTCAG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	41, 175
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	124, 187, 292
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	211, 286
BstC8I	GCNNGC	2 cut(s)	131, 246
BstDEI	CTNAG	1 cut(s)	235
BstKTI	GATC	3 cut(s)	127, 190, 295
BstMAI	GTCTC	2 cut(s)	47, 292
BstMBI	GATC	3 cut(s)	124, 187, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	228
BtsIMutI	CAGTG	2 cut(s)	197, 282
Cac8I	GCNNGC	2 cut(s)	131, 246
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	4 cut(s)	11, 105, 200, 234
CviKI_1	RGCY	4 cut(s)	11, 105, 200, 234
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	3 cut(s)	126, 189, 294
DpnII	GATC	3 cut(s)	124, 187, 292
Ecl136II	GAGCTC	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	18
EcoT22I	ATGCAT	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	236
FaeI	CATG	1 cut(s)	232
FaiI	YATR	7 cut(s)	30, 69, 157, 230, 242, 252, 280
FatI	CATG	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	236
FspBI	CTAG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	232
HincII	GTYRAC	2 cut(s)	80, 137
HindII	GTYRAC	2 cut(s)	80, 137
HinfI	GANTC	1 cut(s)	15
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	3 cut(s)	80, 137, 146
Hpy188I	TCNGA	4 cut(s)	238, 262, 292, 318
Hpy188III	TCNNGA	2 cut(s)	6, 59
Hpy8I	GTNNAC	3 cut(s)	80, 137, 146
HpyAV	CCTTC	2 cut(s)	93, 309
HpyCH4III	ACNGT	2 cut(s)	211, 286
HpyCH4V	TGCA	7 cut(s)	34, 39, 67, 175, 180, 195, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	235
Hsp92II	CATG	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	124, 187, 292
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	6 cut(s)	5, 9, 32, 125, 143, 327
LweI	GCATC	3 cut(s)	189, 266, 322
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	3 cut(s)	205, 323, 337
MalI	GATC	3 cut(s)	126, 189, 294
MboI	GATC	3 cut(s)	124, 187, 292
MhlI	GDGCHC	2 cut(s)	228, 236
MluCI	AATT	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	9
MnlI	CCTC	2 cut(s)	211, 306
Mph1103I	ATGCAT	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	3 cut(s)	124, 187, 292
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	177
PaeR7I	CTCGAG	1 cut(s)	106
PctI	GAATGC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	106
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	236
Sau3AI	GATC	3 cut(s)	124, 187, 292
ScaI	AGTACT	1 cut(s)	112
SchI	GAGTC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	2 cut(s)	228, 236
SetI	ASST	6 cut(s)	13, 85, 154, 236, 272, 346
SfaNI	GCATC	3 cut(s)	189, 266, 322
Sfr274I	CTCGAG	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	106, 308
SmoI	CTYRAG	2 cut(s)	106, 308
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	211, 286
TaqI	TCGA	2 cut(s)	5, 107
TasI	AATT	1 cut(s)	303
TatI	WGTACW	1 cut(s)	110
TscAI	CASTG	2 cut(s)	197, 289
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	197, 289
XhoI	CTCGAG	1 cut(s)	106
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.