DNA polymerase III
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_pol3_delta2 | PF13177 | 316 - 473 | 1.1e-21 | DNA polymerase III, delta subunit |
| AAA | PF00004 | 336 - 467 | 3.8e-09 | ATPase family associated with various cellular activities (AAA) |
| DNAX_ATPase_lid | PF22608 | 478 - 518 | 2.2e-07 | DNA polymerase III clamp loader subunit, ATPase lid domain |
| RCF1-5-like_lid | PF21960 | 481 - 517 | 6.9e-06 | RCF1/5-like, AAA+ ATPase lid domain |
| DnaA_N-like_STI | PF23007 | 690 - 773 | 3.2e-31 | STICHEL, DnaA_N-like alpha-beta domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1679 |
| AarI | CACCTGC | 1 cut(s) | 632 |
| Acc36I | ACCTGC | 1 cut(s) | 632 |
| AccB1I | GGYRCC | 2 cut(s) | 2638, 3000 |
| AccBSI | CCGCTC | 1 cut(s) | 2597 |
| AccII | CGCG | 3 cut(s) | 1194, 1375, 2424 |
| AclWI | GGATC | 5 cut(s) | 77, 90, 301, 1706, 2318 |
| AcoI | YGGCCR | 1 cut(s) | 462 |
| AcsI | RAATTY | 9 cut(s) | 107, 145, 229, 319, 911, 1053, 2213, 2938, 3013 |
| AcuI | CTGAAG | 2 cut(s) | 621, 1803 |
| AcyI | GRCGYC | 1 cut(s) | 16 |
| AfaI | GTAC | 6 cut(s) | 670, 1030, 1130, 2322, 2450, 2557 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 641, 725 |
| AflIII | ACRYGT | 1 cut(s) | 1330 |
| AhlI | ACTAGT | 1 cut(s) | 3022 |
| AjnI | CCWGG | 8 cut(s) | 718, 893, 1587, 1685, 2129, 2641, 2682, 2691 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 610, 642 |
| Alw21I | GWGCWC | 2 cut(s) | 2275, 2591 |
| Alw26I | GTCTC | 6 cut(s) | 78, 969, 1112, 1182, 1206, 2198 |
| Alw44I | GTGCAC | 1 cut(s) | 2271 |
| AlwI | GGATC | 5 cut(s) | 77, 90, 301, 1706, 2318 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1837 |
| Ama87I | CYCGRG | 1 cut(s) | 2737 |
| AoxI | GGCC | 6 cut(s) | 221, 462, 917, 1097, 1585, 1683 |
| ApaLI | GTGCAC | 1 cut(s) | 2271 |
| ApoI | RAATTY | 9 cut(s) | 107, 145, 229, 319, 911, 1053, 2213, 2938, 3013 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 610, 642 |
| AseI | ATTAAT | 1 cut(s) | 2648 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 182, 1796, 1856, 2431, 2866 |
| AspA2I | CCTAGG | 1 cut(s) | 350 |
| AspLEI | GCGC | 2 cut(s) | 858, 2424 |
| AspS9I | GGNCC | 4 cut(s) | 1019, 1392, 1585, 1683 |
| AsuHPI | GGTGA | 7 cut(s) | 79, 377, 656, 1439, 1778, 2397, 2800 |
| AvaI | CYCGRG | 1 cut(s) | 2737 |
| AvaII | GGWCC | 2 cut(s) | 1019, 1392 |
| AvrII | CCTAGG | 1 cut(s) | 350 |
| AxyI | CCTNAGG | 1 cut(s) | 2977 |
| BaeGI | GKGCMC | 1 cut(s) | 2275 |
| BalI | TGGCCA | 1 cut(s) | 464 |
| BamHI | GGATCC | 1 cut(s) | 82 |
| BanI | GGYRCC | 2 cut(s) | 2638, 3000 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2565, 2597 |
| BbsI | GAAGAC | 1 cut(s) | 2163 |
| Bbv12I | GWGCWC | 2 cut(s) | 2275, 2591 |
| BbvCI | CCTCAGC | 1 cut(s) | 2996 |
| BccI | CCATC | 6 cut(s) | 2, 94, 804, 1418, 2368, 2416 |
| BceAI | ACGGC | 1 cut(s) | 1084 |
| BciT130I | CCWGG | 8 cut(s) | 720, 895, 1589, 1687, 2131, 2643, 2684, 2693 |
| BciVI | GTATCC | 2 cut(s) | 1897, 2245 |
| BclI | TGATCA | 4 cut(s) | 712, 1347, 1480, 1549 |
| BcoDI | GTCTC | 6 cut(s) | 78, 969, 1112, 1182, 1206, 2198 |
| BcuI | ACTAGT | 1 cut(s) | 3022 |
| BfaI | CTAG | 7 cut(s) | 300, 351, 756, 984, 1640, 1965, 3023 |
| BfmI | CTRYAG | 6 cut(s) | 1062, 1914, 1938, 2112, 2199, 2881 |
| BfuAI | ACCTGC | 1 cut(s) | 632 |
| BfuI | GTATCC | 2 cut(s) | 1897, 2245 |
| BglII | AGATCT | 1 cut(s) | 1642 |
| BlnI | CCTAGG | 1 cut(s) | 350 |
| BlpI | GCTNAGC | 1 cut(s) | 1931 |
| Bme1390I | CCNGG | 8 cut(s) | 720, 895, 1589, 1687, 2131, 2643, 2684, 2693 |
| Bme18I | GGWCC | 2 cut(s) | 1019, 1392 |
| BmeT110I | CYCGRG | 1 cut(s) | 2737 |
| BmgT120I | GGNCC | 4 cut(s) | 1019, 1392, 1585, 1683 |
| BmiI | GGNNCC | 4 cut(s) | 84, 1394, 2640, 3002 |
| BmrFI | CCNGG | 8 cut(s) | 720, 895, 1589, 1687, 2131, 2643, 2684, 2693 |
| BoxI | GACNNNNGTC | 1 cut(s) | 473 |
| BpiI | GAAGAC | 1 cut(s) | 2163 |
| BpmI | CTGGAG | 2 cut(s) | 1106, 1212 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2996 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1931 |
| BpuEI | CTTGAG | 2 cut(s) | 1033, 1493 |
| Bsa29I | ATCGAT | 1 cut(s) | 1314 |
| BsaAI | YACGTR | 1 cut(s) | 2324 |
| BsaBI | GATNNNNATC | 3 cut(s) | 711, 795, 2309 |
| BsaHI | GRCGYC | 1 cut(s) | 16 |
| BsaI | GGTCTC | 6 cut(s) | 78, 969, 1112, 1182, 1206, 2198 |
| BsaJI | CCNNGG | 8 cut(s) | 350, 661, 893, 1015, 1373, 1686, 2238, 2726 |
| BsaWI | WCCGGW | 2 cut(s) | 118, 1182 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 889, 919 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 641, 725 |
| Bse1I | ACTGG | 3 cut(s) | 625, 1089, 1229 |
| Bse21I | CCTNAGG | 1 cut(s) | 2977 |
| Bse3DI | GCAATG | 3 cut(s) | 1500, 2044, 2262 |
| Bse8I | GATNNNNATC | 3 cut(s) | 711, 795, 2309 |
| BseBI | CCWGG | 8 cut(s) | 720, 895, 1589, 1687, 2131, 2643, 2684, 2693 |
| BseCI | ATCGAT | 1 cut(s) | 1314 |
| BseDI | CCNNGG | 8 cut(s) | 350, 661, 893, 1015, 1373, 1686, 2238, 2726 |
| BseGI | GGATG | 9 cut(s) | 13, 496, 715, 796, 1429, 1537, 1755, 1966, 2603 |
| BseJI | GATNNNNATC | 3 cut(s) | 711, 795, 2309 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 641, 725 |
| BseMI | GCAATG | 3 cut(s) | 1500, 2044, 2262 |
| BseNI | ACTGG | 3 cut(s) | 625, 1089, 1229 |
| BseRI | GAGGAG | 3 cut(s) | 1103, 1939, 1942 |
| BseSI | GKGCMC | 1 cut(s) | 2275 |
| Bsh1236I | CGCG | 3 cut(s) | 1194, 1375, 2424 |
| BshFI | GGCC | 6 cut(s) | 223, 464, 919, 1099, 1587, 1685 |
| BshNI | GGYRCC | 2 cut(s) | 2638, 3000 |
| BshVI | ATCGAT | 1 cut(s) | 1314 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2275, 2591 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2737 |
| BsiSI | CCGG | 3 cut(s) | 119, 1183, 2771 |
| BslFI | GGGAC | 2 cut(s) | 957, 1378 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 641, 725 |
| BsmAI | GTCTC | 6 cut(s) | 78, 969, 1112, 1182, 1206, 2198 |
| BsmFI | GGGAC | 2 cut(s) | 957, 1378 |
| BsmI | GAATGC | 4 cut(s) | 1219, 1384, 2070, 2397 |
| BsnI | GGCC | 6 cut(s) | 223, 464, 919, 1099, 1587, 1685 |
| Bso31I | GGTCTC | 6 cut(s) | 78, 969, 1112, 1182, 1206, 2198 |
| BsoBI | CYCGRG | 1 cut(s) | 2737 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2275, 2591 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1931 |
| Bsp19I | CCATGG | 2 cut(s) | 661, 1015 |
| BspANI | GGCC | 6 cut(s) | 223, 464, 919, 1099, 1587, 1685 |
| BspDI | ATCGAT | 1 cut(s) | 1314 |
| BspFNI | CGCG | 3 cut(s) | 1194, 1375, 2424 |
| BspHI | TCATGA | 1 cut(s) | 709 |
| BspLI | GGNNCC | 4 cut(s) | 84, 1394, 2640, 3002 |
| BspMAI | CTGCAG | 4 cut(s) | 1066, 1918, 1942, 2885 |
| BspMI | ACCTGC | 1 cut(s) | 632 |
| BspPI | GGATC | 5 cut(s) | 77, 90, 301, 1706, 2318 |
| BspT107I | GGYRCC | 2 cut(s) | 2638, 3000 |
| BspTNI | GGTCTC | 6 cut(s) | 78, 969, 1112, 1182, 1206, 2198 |
| BsrBI | CCGCTC | 1 cut(s) | 2597 |
| BsrDI | GCAATG | 3 cut(s) | 1500, 2044, 2262 |
| BsrI | ACTGG | 3 cut(s) | 625, 1089, 1229 |
| BssECI | CCNNGG | 8 cut(s) | 350, 661, 893, 1015, 1373, 1686, 2238, 2726 |
| BssNI | GRCGYC | 1 cut(s) | 16 |
| BssT1I | CCWWGG | 5 cut(s) | 350, 661, 1015, 2238, 2726 |
| Bst2UI | CCWGG | 8 cut(s) | 720, 895, 1589, 1687, 2131, 2643, 2684, 2693 |
| Bst4CI | ACNGT | 8 cut(s) | 209, 511, 567, 882, 1242, 1392, 1675, 2088 |
| Bst6I | CTCTTC | 8 cut(s) | 118, 393, 684, 1458, 2099, 2291, 2664, 2919 |
| BstACI | GRCGYC | 1 cut(s) | 16 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 630, 647 |
| BstBAI | YACGTR | 1 cut(s) | 2324 |
| BstC8I | GCNNGC | 1 cut(s) | 1438 |
| BstDSI | CCRYGG | 3 cut(s) | 661, 1015, 1373 |
| BstEII | GGTNACC | 1 cut(s) | 2788 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 639 |
| BstF5I | GGATG | 9 cut(s) | 13, 496, 715, 796, 1429, 1537, 1755, 1966, 2603 |
| BstFNI | CGCG | 3 cut(s) | 1194, 1375, 2424 |
| BstHHI | GCGC | 2 cut(s) | 858, 2424 |
| BstMAI | GTCTC | 6 cut(s) | 78, 969, 1112, 1182, 1206, 2198 |
| BstNI | CCWGG | 8 cut(s) | 720, 895, 1589, 1687, 2131, 2643, 2684, 2693 |
| BstNSI | RCATGY | 2 cut(s) | 474, 1334 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 473 |
| BstPI | GGTNACC | 1 cut(s) | 2788 |
| BstSCI | CCNGG | 8 cut(s) | 718, 893, 1587, 1685, 2129, 2641, 2682, 2691 |
| BstSFI | CTRYAG | 6 cut(s) | 1062, 1914, 1938, 2112, 2199, 2881 |
| BstSLI | GKGCMC | 1 cut(s) | 2275 |
| BstUI | CGCG | 3 cut(s) | 1194, 1375, 2424 |
| BstV2I | GAAGAC | 1 cut(s) | 2163 |
| BstX2I | RGATCY | 2 cut(s) | 82, 1642 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 194 |
| BstYI | RGATCY | 2 cut(s) | 82, 1642 |
| Bsu15I | ATCGAT | 1 cut(s) | 1314 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2977 |
| BsuI | GTATCC | 2 cut(s) | 1897, 2245 |
| BsuRI | GGCC | 6 cut(s) | 223, 464, 919, 1099, 1587, 1685 |
| BsuTUI | ATCGAT | 1 cut(s) | 1314 |
| BtgI | CCRYGG | 3 cut(s) | 661, 1015, 1373 |
| BtsCI | GGATG | 9 cut(s) | 13, 496, 715, 796, 1429, 1537, 1755, 1966, 2603 |
| BtsIMutI | CAGTG | 4 cut(s) | 419, 572, 1082, 2907 |
| BveI | ACCTGC | 1 cut(s) | 632 |
| Cac8I | GCNNGC | 1 cut(s) | 1438 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1837 |
| CciI | TCATGA | 1 cut(s) | 709 |
| CfoI | GCGC | 2 cut(s) | 858, 2424 |
| Cfr13I | GGNCC | 4 cut(s) | 1019, 1392, 1585, 1683 |
| Cfr42I | CCGCGG | 1 cut(s) | 1376 |
| ClaI | ATCGAT | 1 cut(s) | 1314 |
| CseI | GACGC | 2 cut(s) | 5, 463 |
| Csp6I | GTAC | 6 cut(s) | 669, 1029, 1129, 2321, 2449, 2556 |
| CviQI | GTAC | 6 cut(s) | 669, 1029, 1129, 2321, 2449, 2556 |
| EaeI | YGGCCR | 1 cut(s) | 462 |
| Eam1104I | CTCTTC | 8 cut(s) | 118, 393, 684, 1458, 2099, 2291, 2664, 2919 |
| EarI | CTCTTC | 8 cut(s) | 118, 393, 684, 1458, 2099, 2291, 2664, 2919 |
| Eco130I | CCWWGG | 5 cut(s) | 350, 661, 1015, 2238, 2726 |
| Eco31I | GGTCTC | 6 cut(s) | 78, 969, 1112, 1182, 1206, 2198 |
| Eco32I | GATATC | 3 cut(s) | 160, 1153, 1403 |
| Eco47I | GGWCC | 2 cut(s) | 1019, 1392 |
| Eco57I | CTGAAG | 2 cut(s) | 621, 1803 |
| Eco81I | CCTNAGG | 1 cut(s) | 2977 |
| Eco88I | CYCGRG | 1 cut(s) | 2737 |
| Eco91I | GGTNACC | 1 cut(s) | 2788 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 639 |
| EcoO65I | GGTNACC | 1 cut(s) | 2788 |
| EcoRI | GAATTC | 4 cut(s) | 145, 229, 319, 2213 |
| EcoRII | CCWGG | 8 cut(s) | 718, 893, 1587, 1685, 2129, 2641, 2682, 2691 |
| EcoRV | GATATC | 3 cut(s) | 160, 1153, 1403 |
| EcoT14I | CCWWGG | 5 cut(s) | 350, 661, 1015, 2238, 2726 |
| EcoT22I | ATGCAT | 1 cut(s) | 1849 |
| ErhI | CCWWGG | 5 cut(s) | 350, 661, 1015, 2238, 2726 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1455, 1487, 2155, 2187, 2838, 2870 |
| FaqI | GGGAC | 2 cut(s) | 957, 1378 |
| FauI | CCCGC | 2 cut(s) | 2393, 2615 |
| FauNDI | CATATG | 3 cut(s) | 447, 2099, 2872 |
| FbaI | TGATCA | 4 cut(s) | 712, 1347, 1480, 1549 |
| FokI | GGATG | 9 cut(s) | 20, 503, 702, 783, 1436, 1544, 1742, 1973, 2590 |
| FspBI | CTAG | 7 cut(s) | 300, 351, 756, 984, 1640, 1965, 3023 |
| GlaI | GCGC | 2 cut(s) | 857, 2423 |
| GsuI | CTGGAG | 2 cut(s) | 1106, 1212 |
| HaeIII | GGCC | 6 cut(s) | 223, 464, 919, 1099, 1587, 1685 |
| HapII | CCGG | 3 cut(s) | 119, 1183, 2771 |
| HgaI | GACGC | 2 cut(s) | 5, 463 |
| HhaI | GCGC | 2 cut(s) | 858, 2424 |
| Hin1I | GRCGYC | 1 cut(s) | 16 |
| Hin6I | GCGC | 2 cut(s) | 856, 2422 |
| HinP1I | GCGC | 2 cut(s) | 856, 2422 |
| HincII | GTYRAC | 1 cut(s) | 2044 |
| HindII | GTYRAC | 1 cut(s) | 2044 |
| HindIII | AAGCTT | 2 cut(s) | 847, 2847 |
| HpaII | CCGG | 3 cut(s) | 119, 1183, 2771 |
| HphI | GGTGA | 7 cut(s) | 79, 377, 656, 1439, 1778, 2397, 2800 |
| Hpy166II | GTNNAC | 7 cut(s) | 671, 1022, 1129, 1523, 2044, 2273, 2451 |
| Hpy8I | GTNNAC | 7 cut(s) | 671, 1022, 1129, 1523, 2044, 2273, 2451 |
| HpyAV | CCTTC | 7 cut(s) | 185, 320, 645, 1766, 2065, 2567, 2926 |
| HpyCH4III | ACNGT | 8 cut(s) | 209, 511, 567, 882, 1242, 1392, 1675, 2088 |
| HpyCH4IV | ACGT | 2 cut(s) | 2323, 2349 |
| HpySE526I | ACGT | 2 cut(s) | 2323, 2349 |
| Hsp92I | GRCGYC | 1 cut(s) | 16 |
| HspAI | GCGC | 2 cut(s) | 856, 2422 |
| Ksp22I | TGATCA | 4 cut(s) | 712, 1347, 1480, 1549 |
| KspI | CCGCGG | 1 cut(s) | 1376 |
| LmnI | GCTCC | 2 cut(s) | 354, 1607 |
| MaeI | CTAG | 7 cut(s) | 300, 351, 756, 984, 1640, 1965, 3023 |
| MaeII | ACGT | 2 cut(s) | 2323, 2349 |
| MaeIII | GTNAC | 3 cut(s) | 2403, 2534, 2788 |
| MbiI | CCGCTC | 1 cut(s) | 2597 |
| MfeI | CAATTG | 2 cut(s) | 597, 2207 |
| MflI | RGATCY | 2 cut(s) | 82, 1642 |
| MhlI | GDGCHC | 2 cut(s) | 2275, 2591 |
| MlsI | TGGCCA | 1 cut(s) | 464 |
| MluNI | TGGCCA | 1 cut(s) | 464 |
| MlyI | GAGTC | 8 cut(s) | 355, 433, 622, 907, 913, 932, 1849, 2342 |
| MmeI | TCCRAC | 3 cut(s) | 313, 2070, 2936 |
| Mox20I | TGGCCA | 1 cut(s) | 464 |
| Mph1103I | ATGCAT | 1 cut(s) | 1849 |
| MroXI | GAANNNNTTC | 5 cut(s) | 182, 1796, 1856, 2431, 2866 |
| MscI | TGGCCA | 1 cut(s) | 464 |
| MseI | TTAA | 8 cut(s) | 132, 1071, 1209, 1245, 1419, 1880, 2471, 2648 |
| MslI | CAYNNNNRTG | 1 cut(s) | 720 |
| Msp20I | TGGCCA | 1 cut(s) | 464 |
| MspA1I | CMGCKG | 4 cut(s) | 1375, 2379, 2886, 2995 |
| MspI | CCGG | 3 cut(s) | 119, 1183, 2771 |
| MspR9I | CCNGG | 8 cut(s) | 720, 895, 1589, 1687, 2131, 2643, 2684, 2693 |
| MunI | CAATTG | 2 cut(s) | 597, 2207 |
| Mva1269I | GAATGC | 4 cut(s) | 1219, 1384, 2070, 2397 |
| MvaI | CCWGG | 8 cut(s) | 720, 895, 1589, 1687, 2131, 2643, 2684, 2693 |
| MvnI | CGCG | 3 cut(s) | 1194, 1375, 2424 |
| NcoI | CCATGG | 2 cut(s) | 661, 1015 |
| NdeI | CATATG | 3 cut(s) | 447, 2099, 2872 |
| NlaIV | GGNNCC | 4 cut(s) | 84, 1394, 2640, 3002 |
| NmuCI | GTSAC | 3 cut(s) | 2403, 2534, 2788 |
| NsiI | ATGCAT | 1 cut(s) | 1849 |
| NspI | RCATGY | 2 cut(s) | 474, 1334 |
| PagI | TCATGA | 1 cut(s) | 709 |
| PaqCI | CACCTGC | 1 cut(s) | 632 |
| PciI | ACATGT | 1 cut(s) | 1330 |
| PctI | GAATGC | 4 cut(s) | 1219, 1384, 2070, 2397 |
| PdmI | GAANNNNTTC | 5 cut(s) | 182, 1796, 1856, 2431, 2866 |
| PleI | GAGTC | 8 cut(s) | 354, 432, 621, 906, 912, 931, 1848, 2341 |
| PpsI | GAGTC | 8 cut(s) | 354, 432, 621, 906, 912, 931, 1848, 2341 |
| Ppu21I | YACGTR | 1 cut(s) | 2324 |
| PscI | ACATGT | 1 cut(s) | 1330 |
| PshAI | GACNNNNGTC | 1 cut(s) | 473 |
| PshBI | ATTAAT | 1 cut(s) | 2648 |
| PsiI | TTATAA | 1 cut(s) | 1679 |
| Psp6I | CCWGG | 8 cut(s) | 718, 893, 1587, 1685, 2129, 2641, 2682, 2691 |
| PspEI | GGTNACC | 1 cut(s) | 2788 |
| PspGI | CCWGG | 8 cut(s) | 718, 893, 1587, 1685, 2129, 2641, 2682, 2691 |
| PspN4I | GGNNCC | 4 cut(s) | 84, 1394, 2640, 3002 |
| PspPI | GGNCC | 4 cut(s) | 1019, 1392, 1585, 1683 |
| PstI | CTGCAG | 4 cut(s) | 1066, 1918, 1942, 2885 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1837 |
| PsuI | RGATCY | 2 cut(s) | 82, 1642 |
| PvuII | CAGCTG | 2 cut(s) | 2379, 2995 |
| RsaI | GTAC | 6 cut(s) | 670, 1030, 1130, 2322, 2450, 2557 |
| RsaNI | GTAC | 6 cut(s) | 669, 1029, 1129, 2321, 2449, 2556 |
| RseI | CAYNNNNRTG | 1 cut(s) | 720 |
| SacII | CCGCGG | 1 cut(s) | 1376 |
| SaqAI | TTAA | 8 cut(s) | 132, 1071, 1209, 1245, 1419, 1880, 2471, 2648 |
| Sau96I | GGNCC | 4 cut(s) | 1019, 1392, 1585, 1683 |
| SchI | GAGTC | 8 cut(s) | 355, 433, 622, 907, 913, 932, 1849, 2342 |
| ScrFI | CCNGG | 8 cut(s) | 720, 895, 1589, 1687, 2131, 2643, 2684, 2693 |
| SduI | GDGCHC | 2 cut(s) | 2275, 2591 |
| SfcI | CTRYAG | 6 cut(s) | 1062, 1914, 1938, 2112, 2199, 2881 |
| Sfr303I | CCGCGG | 1 cut(s) | 1376 |
| SgrBI | CCGCGG | 1 cut(s) | 1376 |
| SinI | GGWCC | 2 cut(s) | 1019, 1392 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 720 |
| SmlI | CTYRAG | 2 cut(s) | 1048, 1472 |
| SmoI | CTYRAG | 2 cut(s) | 1048, 1472 |
| SpeI | ACTAGT | 1 cut(s) | 3022 |
| SspI | AATATT | 1 cut(s) | 1857 |
| SspMI | CTAG | 7 cut(s) | 300, 351, 756, 984, 1640, 1965, 3023 |
| StyD4I | CCNGG | 8 cut(s) | 718, 893, 1587, 1685, 2129, 2641, 2682, 2691 |
| StyI | CCWWGG | 5 cut(s) | 350, 661, 1015, 2238, 2726 |
| TaaI | ACNGT | 8 cut(s) | 209, 511, 567, 882, 1242, 1392, 1675, 2088 |
| TaiI | ACGT | 2 cut(s) | 2326, 2352 |
| TaqI | TCGA | 3 cut(s) | 616, 933, 1314 |
| TatI | WGTACW | 3 cut(s) | 1128, 2448, 2555 |
| TauI | GCSGC | 4 cut(s) | 16, 1375, 2600, 2889 |
| Tru1I | TTAA | 8 cut(s) | 132, 1071, 1209, 1245, 1419, 1880, 2471, 2648 |
| Tru9I | TTAA | 8 cut(s) | 132, 1071, 1209, 1245, 1419, 1880, 2471, 2648 |
| TscAI | CASTG | 4 cut(s) | 426, 572, 1089, 2914 |
| TseFI | GTSAC | 3 cut(s) | 2403, 2534, 2788 |
| Tsp45I | GTSAC | 3 cut(s) | 2403, 2534, 2788 |
| TspRI | CASTG | 4 cut(s) | 426, 572, 1089, 2914 |
| VneI | GTGCAC | 1 cut(s) | 2271 |
| VpaK11BI | GGWCC | 2 cut(s) | 1019, 1392 |
| VspI | ATTAAT | 1 cut(s) | 2648 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 639 |
| XapI | RAATTY | 9 cut(s) | 107, 145, 229, 319, 911, 1053, 2213, 2938, 3013 |
| XbaI | TCTAGA | 2 cut(s) | 299, 983 |
| XceI | RCATGY | 2 cut(s) | 474, 1334 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1277 |
| XmaJI | CCTAGG | 1 cut(s) | 350 |
| XmnI | GAANNNNTTC | 5 cut(s) | 182, 1796, 1856, 2431, 2866 |
| XspI | CTAG | 7 cut(s) | 300, 351, 756, 984, 1640, 1965, 3023 |
| Zsp2I | ATGCAT | 1 cut(s) | 1849 |