DNA polymerase III
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| mTERF | PF02536 | 3 - 64 | 1e-07 | mTERF |
| DNA_pol3_delta2 | PF13177 | 58 - 192 | 5e-17 | DNA polymerase III, delta subunit |
| AAA | PF00004 | 71 - 194 | 1.4e-07 | ATPase family associated with various cellular activities (AAA) |
| DnaA_N-like_STI | PF23007 | 288 - 339 | 3.8e-14 | STICHEL, DnaA_N-like alpha-beta domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 481 |
| AccII | CGCG | 2 cut(s) | 580, 1122 |
| AciI | CCGC | 4 cut(s) | 578, 580, 1084, 1122 |
| AclWI | GGATC | 2 cut(s) | 845, 1016 |
| AcsI | RAATTY | 2 cut(s) | 258, 911 |
| AfaI | GTAC | 4 cut(s) | 235, 299, 335, 1020 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 481, 605 |
| AflIII | ACRYGT | 1 cut(s) | 535 |
| AgeI | ACCGGT | 1 cut(s) | 396 |
| AgsI | TTSAA | 1 cut(s) | 140 |
| AjnI | CCWGG | 1 cut(s) | 824 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 155, 187 |
| AluBI | AGCT | 8 cut(s) | 87, 425, 574, 694, 739, 749, 902, 1077 |
| AluI | AGCT | 8 cut(s) | 87, 425, 574, 694, 739, 749, 902, 1077 |
| Alw21I | GWGCWC | 1 cut(s) | 973 |
| Alw26I | GTCTC | 3 cut(s) | 317, 387, 896 |
| Alw44I | GTGCAC | 1 cut(s) | 969 |
| AlwI | GGATC | 2 cut(s) | 845, 1016 |
| AoxI | GGCC | 2 cut(s) | 302, 822 |
| ApaLI | GTGCAC | 1 cut(s) | 969 |
| ApeKI | GCWGC | 6 cut(s) | 266, 269, 318, 422, 574, 644 |
| ApoI | RAATTY | 2 cut(s) | 258, 911 |
| AsiGI | ACCGGT | 1 cut(s) | 396 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1129 |
| AspLEI | GCGC | 1 cut(s) | 1122 |
| AspS9I | GGNCC | 3 cut(s) | 224, 596, 822 |
| AsuHPI | GGTGA | 2 cut(s) | 786, 1095 |
| AvaII | GGWCC | 2 cut(s) | 224, 596 |
| BaeGI | GKGCMC | 1 cut(s) | 973 |
| Bbv12I | GWGCWC | 1 cut(s) | 973 |
| BbvI | GCAGC | 6 cut(s) | 253, 281, 305, 434, 561, 631 |
| BccI | CCATC | 4 cut(s) | 25, 475, 1066, 1114 |
| BceAI | ACGGC | 1 cut(s) | 289 |
| BciT130I | CCWGG | 1 cut(s) | 826 |
| BciVI | GTATCC | 1 cut(s) | 943 |
| BclI | TGATCA | 3 cut(s) | 552, 619, 688 |
| BcoDI | GTCTC | 3 cut(s) | 317, 387, 896 |
| BfaI | CTAG | 1 cut(s) | 779 |
| BfmI | CTRYAG | 2 cut(s) | 267, 897 |
| BfuI | GTATCC | 1 cut(s) | 943 |
| BglII | AGATCT | 1 cut(s) | 781 |
| BisI | GCNGC | 7 cut(s) | 267, 270, 319, 423, 575, 578, 645 |
| BlsI | GCNGC | 7 cut(s) | 268, 271, 320, 424, 576, 579, 646 |
| Bme1390I | CCNGG | 1 cut(s) | 826 |
| Bme18I | GGWCC | 2 cut(s) | 224, 596 |
| BmgT120I | GGNCC | 3 cut(s) | 224, 596, 822 |
| BmiI | GGNNCC | 1 cut(s) | 598 |
| BmrFI | CCNGG | 1 cut(s) | 826 |
| BmsI | GCATC | 4 cut(s) | 525, 661, 672, 846 |
| BpmI | CTGGAG | 1 cut(s) | 311 |
| BpuEI | CTTGAG | 2 cut(s) | 238, 632 |
| Bsa29I | ATCGAT | 2 cut(s) | 519, 869 |
| BsaAI | YACGTR | 2 cut(s) | 931, 1022 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1007 |
| BsaI | GGTCTC | 3 cut(s) | 317, 387, 896 |
| BsaJI | CCNNGG | 5 cut(s) | 107, 220, 578, 825, 936 |
| BsaWI | WCCGGW | 2 cut(s) | 387, 396 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 481, 605 |
| Bse118I | RCCGGY | 1 cut(s) | 396 |
| Bse1I | ACTGG | 1 cut(s) | 294 |
| Bse3DI | GCAATG | 2 cut(s) | 639, 960 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1007 |
| BseBI | CCWGG | 1 cut(s) | 826 |
| BseCI | ATCGAT | 2 cut(s) | 519, 869 |
| BseDI | CCNNGG | 5 cut(s) | 107, 220, 578, 825, 936 |
| BseGI | GGATG | 3 cut(s) | 36, 102, 676 |
| BseJI | GATNNNNATC | 1 cut(s) | 1007 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 481, 605 |
| BseMI | GCAATG | 2 cut(s) | 639, 960 |
| BseMII | CTCAG | 1 cut(s) | 933 |
| BseNI | ACTGG | 1 cut(s) | 294 |
| BseRI | GAGGAG | 2 cut(s) | 173, 308 |
| BseSI | GKGCMC | 1 cut(s) | 973 |
| BseXI | GCAGC | 6 cut(s) | 253, 281, 305, 434, 561, 631 |
| Bsh1236I | CGCG | 2 cut(s) | 580, 1122 |
| Bsh1285I | CGRYCG | 1 cut(s) | 873 |
| BshFI | GGCC | 2 cut(s) | 304, 824 |
| BshTI | ACCGGT | 1 cut(s) | 396 |
| BshVI | ATCGAT | 2 cut(s) | 519, 869 |
| BsiEI | CGRYCG | 1 cut(s) | 873 |
| BsiHKAI | GWGCWC | 1 cut(s) | 973 |
| BsiSI | CCGG | 2 cut(s) | 388, 397 |
| BslFI | GGGAC | 2 cut(s) | 159, 582 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 481, 605 |
| BsmAI | GTCTC | 3 cut(s) | 317, 387, 896 |
| BsmFI | GGGAC | 2 cut(s) | 159, 582 |
| BsmI | GAATGC | 3 cut(s) | 40, 424, 1095 |
| BsnI | GGCC | 2 cut(s) | 304, 824 |
| Bso31I | GGTCTC | 3 cut(s) | 317, 387, 896 |
| Bsp1286I | GDGCHC | 1 cut(s) | 973 |
| Bsp19I | CCATGG | 1 cut(s) | 220 |
| BspACI | CCGC | 4 cut(s) | 578, 580, 1084, 1122 |
| BspANI | GGCC | 2 cut(s) | 304, 824 |
| BspCNI | CTCAG | 1 cut(s) | 934 |
| BspDI | ATCGAT | 2 cut(s) | 519, 869 |
| BspFNI | CGCG | 2 cut(s) | 580, 1122 |
| BspLI | GGNNCC | 1 cut(s) | 598 |
| BspMAI | CTGCAG | 1 cut(s) | 271 |
| BspPI | GGATC | 2 cut(s) | 845, 1016 |
| BspTNI | GGTCTC | 3 cut(s) | 317, 387, 896 |
| BsrDI | GCAATG | 2 cut(s) | 639, 960 |
| BsrFI | RCCGGY | 1 cut(s) | 396 |
| BsrI | ACTGG | 1 cut(s) | 294 |
| BssAI | RCCGGY | 1 cut(s) | 396 |
| BssECI | CCNNGG | 5 cut(s) | 107, 220, 578, 825, 936 |
| BssT1I | CCWWGG | 3 cut(s) | 107, 220, 936 |
| Bst2UI | CCWGG | 1 cut(s) | 826 |
| Bst4CI | ACNGT | 4 cut(s) | 181, 447, 596, 814 |
| BstBAI | YACGTR | 2 cut(s) | 931, 1022 |
| BstDEI | CTNAG | 5 cut(s) | 19, 88, 665, 695, 942 |
| BstDSI | CCRYGG | 2 cut(s) | 220, 578 |
| BstF5I | GGATG | 3 cut(s) | 36, 102, 676 |
| BstFNI | CGCG | 2 cut(s) | 580, 1122 |
| BstHHI | GCGC | 1 cut(s) | 1122 |
| BstMAI | GTCTC | 3 cut(s) | 317, 387, 896 |
| BstMCI | CGRYCG | 1 cut(s) | 873 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 691, 700, 1083 |
| BstNI | CCWGG | 1 cut(s) | 826 |
| BstNSI | RCATGY | 1 cut(s) | 539 |
| BstSCI | CCNGG | 1 cut(s) | 824 |
| BstSFI | CTRYAG | 2 cut(s) | 267, 897 |
| BstSLI | GKGCMC | 1 cut(s) | 973 |
| BstSNI | TACGTA | 1 cut(s) | 931 |
| BstUI | CGCG | 2 cut(s) | 580, 1122 |
| BstV1I | GCAGC | 6 cut(s) | 253, 281, 305, 434, 561, 631 |
| BstX2I | RGATCY | 1 cut(s) | 781 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 114 |
| BstYI | RGATCY | 1 cut(s) | 781 |
| Bsu15I | ATCGAT | 2 cut(s) | 519, 869 |
| BsuI | GTATCC | 1 cut(s) | 943 |
| BsuRI | GGCC | 2 cut(s) | 304, 824 |
| BsuTUI | ATCGAT | 2 cut(s) | 519, 869 |
| BtgI | CCRYGG | 2 cut(s) | 220, 578 |
| BtsCI | GGATG | 3 cut(s) | 36, 102, 676 |
| BtsIMutI | CAGTG | 1 cut(s) | 287 |
| CfoI | GCGC | 1 cut(s) | 1122 |
| Cfr10I | RCCGGY | 1 cut(s) | 396 |
| Cfr13I | GGNCC | 3 cut(s) | 224, 596, 822 |
| Cfr42I | CCGCGG | 1 cut(s) | 581 |
| ClaI | ATCGAT | 2 cut(s) | 519, 869 |
| Csp6I | GTAC | 4 cut(s) | 234, 298, 334, 1019 |
| CspAI | ACCGGT | 1 cut(s) | 396 |
| CviAII | CATG | 5 cut(s) | 221, 495, 536, 876, 951 |
| CviQI | GTAC | 4 cut(s) | 234, 298, 334, 1019 |
| DdeI | CTNAG | 5 cut(s) | 19, 88, 665, 695, 942 |
| DraI | TTTAAA | 1 cut(s) | 633 |
| Eco105I | TACGTA | 1 cut(s) | 931 |
| Eco130I | CCWWGG | 3 cut(s) | 107, 220, 936 |
| Eco31I | GGTCTC | 3 cut(s) | 317, 387, 896 |
| Eco32I | GATATC | 1 cut(s) | 358 |
| Eco47I | GGWCC | 2 cut(s) | 224, 596 |
| EcoRI | GAATTC | 1 cut(s) | 911 |
| EcoRII | CCWGG | 1 cut(s) | 824 |
| EcoRV | GATATC | 1 cut(s) | 358 |
| EcoT14I | CCWWGG | 3 cut(s) | 107, 220, 936 |
| ErhI | CCWWGG | 3 cut(s) | 107, 220, 936 |
| FaeI | CATG | 5 cut(s) | 224, 498, 539, 879, 954 |
| FaqI | GGGAC | 2 cut(s) | 159, 582 |
| FatI | CATG | 5 cut(s) | 220, 494, 535, 875, 950 |
| FauI | CCCGC | 1 cut(s) | 1091 |
| FbaI | TGATCA | 3 cut(s) | 552, 619, 688 |
| Fnu4HI | GCNGC | 7 cut(s) | 267, 270, 319, 423, 575, 578, 645 |
| FokI | GGATG | 3 cut(s) | 43, 89, 683 |
| Fsp4HI | GCNGC | 7 cut(s) | 267, 270, 319, 423, 575, 578, 645 |
| FspBI | CTAG | 1 cut(s) | 779 |
| GlaI | GCGC | 1 cut(s) | 1121 |
| GluI | GCNGC | 7 cut(s) | 267, 270, 319, 423, 575, 578, 645 |
| GsuI | CTGGAG | 1 cut(s) | 311 |
| HaeIII | GGCC | 2 cut(s) | 304, 824 |
| HapII | CCGG | 2 cut(s) | 388, 397 |
| HhaI | GCGC | 1 cut(s) | 1122 |
| Hin1II | CATG | 5 cut(s) | 224, 498, 539, 879, 954 |
| Hin6I | GCGC | 1 cut(s) | 1120 |
| HinP1I | GCGC | 1 cut(s) | 1120 |
| HinfI | GANTC | 6 cut(s) | 99, 127, 371, 381, 583, 1031 |
| HpaII | CCGG | 2 cut(s) | 388, 397 |
| HphI | GGTGA | 2 cut(s) | 786, 1095 |
| Hpy166II | GTNNAC | 5 cut(s) | 25, 227, 334, 662, 971 |
| Hpy188I | TCNGA | 3 cut(s) | 757, 855, 1135 |
| Hpy188III | TCNNGA | 7 cut(s) | 255, 342, 560, 566, 611, 1006, 1143 |
| Hpy8I | GTNNAC | 5 cut(s) | 25, 227, 334, 662, 971 |
| HpyCH4III | ACNGT | 4 cut(s) | 181, 447, 596, 814 |
| HpyCH4IV | ACGT | 3 cut(s) | 930, 1021, 1047 |
| HpyCH4V | TGCA | 9 cut(s) | 56, 269, 422, 674, 859, 965, 971, 1043, 1093 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 691, 700, 1083 |
| HpyF3I | CTNAG | 5 cut(s) | 19, 88, 665, 695, 942 |
| HpySE526I | ACGT | 3 cut(s) | 930, 1021, 1047 |
| Hsp92II | CATG | 5 cut(s) | 224, 498, 539, 879, 954 |
| HspAI | GCGC | 1 cut(s) | 1120 |
| Ksp22I | TGATCA | 3 cut(s) | 552, 619, 688 |
| KspI | CCGCGG | 1 cut(s) | 581 |
| LmnI | GCTCC | 1 cut(s) | 746 |
| Lsp1109I | GCAGC | 6 cut(s) | 253, 281, 305, 434, 561, 631 |
| LweI | GCATC | 4 cut(s) | 525, 661, 672, 846 |
| MaeI | CTAG | 1 cut(s) | 779 |
| MaeII | ACGT | 3 cut(s) | 930, 1021, 1047 |
| MaeIII | GTNAC | 3 cut(s) | 80, 792, 1101 |
| MboII | GAAGA | 4 cut(s) | 61, 207, 432, 1063 |
| MflI | RGATCY | 1 cut(s) | 781 |
| MhlI | GDGCHC | 1 cut(s) | 973 |
| MluCI | AATT | 5 cut(s) | 258, 277, 764, 905, 911 |
| MlyI | GAGTC | 2 cut(s) | 136, 1040 |
| MnlI | CCTC | 6 cut(s) | 151, 214, 262, 286, 441, 598 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1129 |
| MseI | TTAA | 6 cut(s) | 123, 185, 276, 450, 632, 818 |
| MspA1I | CMGCKG | 2 cut(s) | 580, 1077 |
| MspI | CCGG | 2 cut(s) | 388, 397 |
| MspR9I | CCNGG | 1 cut(s) | 826 |
| Mva1269I | GAATGC | 3 cut(s) | 40, 424, 1095 |
| MvaI | CCWGG | 1 cut(s) | 826 |
| MvnI | CGCG | 2 cut(s) | 580, 1122 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 691, 700, 1083 |
| NcoI | CCATGG | 1 cut(s) | 220 |
| NlaIII | CATG | 5 cut(s) | 224, 498, 539, 879, 954 |
| NlaIV | GGNNCC | 1 cut(s) | 598 |
| NmuCI | GTSAC | 2 cut(s) | 792, 1101 |
| NspI | RCATGY | 1 cut(s) | 539 |
| PciI | ACATGT | 1 cut(s) | 535 |
| PctI | GAATGC | 3 cut(s) | 40, 424, 1095 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1129 |
| PfeI | GAWTC | 4 cut(s) | 99, 371, 381, 583 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 481 |
| PinAI | ACCGGT | 1 cut(s) | 396 |
| PkrI | GCNGC | 7 cut(s) | 268, 271, 320, 424, 576, 579, 646 |
| Ple19I | CGATCG | 1 cut(s) | 873 |
| PleI | GAGTC | 2 cut(s) | 135, 1039 |
| PpsI | GAGTC | 2 cut(s) | 135, 1039 |
| Ppu21I | YACGTR | 2 cut(s) | 931, 1022 |
| PscI | ACATGT | 1 cut(s) | 535 |
| Psp6I | CCWGG | 1 cut(s) | 824 |
| PspGI | CCWGG | 1 cut(s) | 824 |
| PspN4I | GGNNCC | 1 cut(s) | 598 |
| PspPI | GGNCC | 3 cut(s) | 224, 596, 822 |
| PstI | CTGCAG | 1 cut(s) | 271 |
| PsuI | RGATCY | 1 cut(s) | 781 |
| PvuI | CGATCG | 1 cut(s) | 873 |
| PvuII | CAGCTG | 1 cut(s) | 1077 |
| RsaI | GTAC | 4 cut(s) | 235, 299, 335, 1020 |
| RsaNI | GTAC | 4 cut(s) | 234, 298, 334, 1019 |
| SacII | CCGCGG | 1 cut(s) | 581 |
| SaqAI | TTAA | 6 cut(s) | 123, 185, 276, 450, 632, 818 |
| SatI | GCNGC | 7 cut(s) | 267, 270, 319, 423, 575, 578, 645 |
| Sau96I | GGNCC | 3 cut(s) | 224, 596, 822 |
| SchI | GAGTC | 2 cut(s) | 136, 1040 |
| ScrFI | CCNGG | 1 cut(s) | 826 |
| SduI | GDGCHC | 1 cut(s) | 973 |
| SfaNI | GCATC | 4 cut(s) | 525, 661, 672, 846 |
| SfcI | CTRYAG | 2 cut(s) | 267, 897 |
| Sfr303I | CCGCGG | 1 cut(s) | 581 |
| SgrBI | CCGCGG | 1 cut(s) | 581 |
| SinI | GGWCC | 2 cut(s) | 224, 596 |
| SmlI | CTYRAG | 2 cut(s) | 253, 611 |
| SmoI | CTYRAG | 2 cut(s) | 253, 611 |
| SnaBI | TACGTA | 1 cut(s) | 931 |
| Sse9I | AATT | 5 cut(s) | 258, 277, 764, 905, 911 |
| SsiI | CCGC | 4 cut(s) | 578, 580, 1084, 1122 |
| SspMI | CTAG | 1 cut(s) | 779 |
| StyD4I | CCNGG | 1 cut(s) | 824 |
| StyI | CCWWGG | 3 cut(s) | 107, 220, 936 |
| TaaI | ACNGT | 4 cut(s) | 181, 447, 596, 814 |
| TaiI | ACGT | 3 cut(s) | 933, 1024, 1050 |
| TaqI | TCGA | 3 cut(s) | 519, 771, 869 |
| TasI | AATT | 5 cut(s) | 258, 277, 764, 905, 911 |
| TatI | WGTACW | 2 cut(s) | 297, 333 |
| TauI | GCSGC | 1 cut(s) | 580 |
| TfiI | GAWTC | 4 cut(s) | 99, 371, 381, 583 |
| Tru1I | TTAA | 6 cut(s) | 123, 185, 276, 450, 632, 818 |
| Tru9I | TTAA | 6 cut(s) | 123, 185, 276, 450, 632, 818 |
| TscAI | CASTG | 1 cut(s) | 294 |
| TseFI | GTSAC | 2 cut(s) | 792, 1101 |
| TseI | GCWGC | 6 cut(s) | 266, 269, 318, 422, 574, 644 |
| Tsp45I | GTSAC | 2 cut(s) | 792, 1101 |
| TspDTI | ATGAA | 4 cut(s) | 431, 448, 628, 777 |
| TspRI | CASTG | 1 cut(s) | 294 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 481 |
| VneI | GTGCAC | 1 cut(s) | 969 |
| VpaK11BI | GGWCC | 2 cut(s) | 224, 596 |
| XapI | RAATTY | 2 cut(s) | 258, 911 |
| XceI | RCATGY | 1 cut(s) | 539 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 482 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1129 |
| XspI | CTAG | 1 cut(s) | 779 |