Rroxscaffold_3G00228760

DNA polymerase III

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
13174531 .. 13178063
3533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228760.1

Sequence Viewer

Length: 1146 bp
ATGGAAACAATGGATTTCTTAGTGAACAGGATGGGGTGGCATTCCCAGAAGATTGCAAAATATCCCAATATAGTTGTGTGTTACAGCTTAGACAAGAGAATCATCCCAAGGTGTTGGGTTGTTAAGAGTCTTGTTTTTGAAAGGGGACTGATAAATGAGGAGAAGTTGAGTTTGGCTACTGTCTTAACGAAAGGAAGAATAACCTCATTCTATCTTTTCCATGGTCCACAAGGTACAGGAAAGACATCAGCCTCAAGAATTTTTGCTGCAGCACTTAATTGTCTTTCACTGGAGGAGTACAGGCCGTGTGGTCTCTGCTGCGAGTGTAATGTGTACTTTTCTGGAAACAGCAGAGATATCAAGGAAATAGATTCTGTGAGAATCAACCGGAGAGACCGGTTTAGGTGTCTTATTATGAATGCAGCTACACCTCCTGTTTCTTCACGGTTTAAGGTTTTCATCATTGATGAGTGCCACTTGATGGGTGGGGAAACATGGGCGACTATTTTGAGTAGCATCGATAACCTTTCTCAACATGTTGTCTTTGTGATGATCACTCCTGATCTGGATAAGCTGCCGCGGAATCAGTATCACGGTCCCAGAGAGGGTCTTGAGTTTGATCAGGTTGCTTTAAACTTCATTGCTGCCAAATCAAATGGTTCACTTAGGGATGCAGAGATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATGGGCTTGGCATACGAGCTTATTGGAGCTGTTTCTGATGATGAATTACTCGATTTGCTAGATCTGGCATTGTCACCTGACACTTCTAATACAGTTTTAAGGGCCAGGGAGTTGATGAGATCAAGGATTGATCCGATGCAACTTATATCGATCGCATGGTTTATTTTAGGTCTCGCTATAGCTGAATTGGAATTCTGCCACCCTGATTACGTATCCAAGGCTGAGAAGTCATGGAAAATCATTGCAAGTGCACTCCAATCTCTATTCGGTTGTAATGTGGAGATCAGGATCAATCTTGTACGTGCTACCGAGTCAAAGTATGCAAACGTGAAGAAGCCATCTTTTAGGTTGTTCAGCTGTTCCCGCAGAATGCAACAAAAGTCACCATCTTTCTGTGAGCGCGGAAGTGGTTCAGACTACTCTTGA

Protein Analysis

381

Amino Acids

43.03

Weight (kDa)

8.5

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 3 - 64 1e-07 mTERF
DNA_pol3_delta2 PF13177 58 - 192 5e-17 DNA polymerase III, delta subunit
AAA PF00004 71 - 194 1.4e-07 ATPase family associated with various cellular activities (AAA)
DnaA_N-like_STI PF23007 288 - 339 3.8e-14 STICHEL, DnaA_N-like alpha-beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 481
AccII CGCG 2 cut(s) 580, 1122
AciI CCGC 4 cut(s) 578, 580, 1084, 1122
AclWI GGATC 2 cut(s) 845, 1016
AcsI RAATTY 2 cut(s) 258, 911
AfaI GTAC 4 cut(s) 235, 299, 335, 1020
AfiI CCNNNNNNNGG 2 cut(s) 481, 605
AflIII ACRYGT 1 cut(s) 535
AgeI ACCGGT 1 cut(s) 396
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 824
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 8 cut(s) 87, 425, 574, 694, 739, 749, 902, 1077
AluI AGCT 8 cut(s) 87, 425, 574, 694, 739, 749, 902, 1077
Alw21I GWGCWC 1 cut(s) 973
Alw26I GTCTC 3 cut(s) 317, 387, 896
Alw44I GTGCAC 1 cut(s) 969
AlwI GGATC 2 cut(s) 845, 1016
AoxI GGCC 2 cut(s) 302, 822
ApaLI GTGCAC 1 cut(s) 969
ApeKI GCWGC 6 cut(s) 266, 269, 318, 422, 574, 644
ApoI RAATTY 2 cut(s) 258, 911
AsiGI ACCGGT 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 1129
AspLEI GCGC 1 cut(s) 1122
AspS9I GGNCC 3 cut(s) 224, 596, 822
AsuHPI GGTGA 2 cut(s) 786, 1095
AvaII GGWCC 2 cut(s) 224, 596
BaeGI GKGCMC 1 cut(s) 973
Bbv12I GWGCWC 1 cut(s) 973
BbvI GCAGC 6 cut(s) 253, 281, 305, 434, 561, 631
BccI CCATC 4 cut(s) 25, 475, 1066, 1114
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 826
BciVI GTATCC 1 cut(s) 943
BclI TGATCA 3 cut(s) 552, 619, 688
BcoDI GTCTC 3 cut(s) 317, 387, 896
BfaI CTAG 1 cut(s) 779
BfmI CTRYAG 2 cut(s) 267, 897
BfuI GTATCC 1 cut(s) 943
BglII AGATCT 1 cut(s) 781
BisI GCNGC 7 cut(s) 267, 270, 319, 423, 575, 578, 645
BlsI GCNGC 7 cut(s) 268, 271, 320, 424, 576, 579, 646
Bme1390I CCNGG 1 cut(s) 826
Bme18I GGWCC 2 cut(s) 224, 596
BmgT120I GGNCC 3 cut(s) 224, 596, 822
BmiI GGNNCC 1 cut(s) 598
BmrFI CCNGG 1 cut(s) 826
BmsI GCATC 4 cut(s) 525, 661, 672, 846
BpmI CTGGAG 1 cut(s) 311
BpuEI CTTGAG 2 cut(s) 238, 632
Bsa29I ATCGAT 2 cut(s) 519, 869
BsaAI YACGTR 2 cut(s) 931, 1022
BsaBI GATNNNNATC 1 cut(s) 1007
BsaI GGTCTC 3 cut(s) 317, 387, 896
BsaJI CCNNGG 5 cut(s) 107, 220, 578, 825, 936
BsaWI WCCGGW 2 cut(s) 387, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 481, 605
Bse118I RCCGGY 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 2 cut(s) 639, 960
Bse8I GATNNNNATC 1 cut(s) 1007
BseBI CCWGG 1 cut(s) 826
BseCI ATCGAT 2 cut(s) 519, 869
BseDI CCNNGG 5 cut(s) 107, 220, 578, 825, 936
BseGI GGATG 3 cut(s) 36, 102, 676
BseJI GATNNNNATC 1 cut(s) 1007
BseLI CCNNNNNNNGG 2 cut(s) 481, 605
BseMI GCAATG 2 cut(s) 639, 960
BseMII CTCAG 1 cut(s) 933
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 2 cut(s) 173, 308
BseSI GKGCMC 1 cut(s) 973
BseXI GCAGC 6 cut(s) 253, 281, 305, 434, 561, 631
Bsh1236I CGCG 2 cut(s) 580, 1122
Bsh1285I CGRYCG 1 cut(s) 873
BshFI GGCC 2 cut(s) 304, 824
BshTI ACCGGT 1 cut(s) 396
BshVI ATCGAT 2 cut(s) 519, 869
BsiEI CGRYCG 1 cut(s) 873
BsiHKAI GWGCWC 1 cut(s) 973
BsiSI CCGG 2 cut(s) 388, 397
BslFI GGGAC 2 cut(s) 159, 582
BslI CCNNNNNNNGG 2 cut(s) 481, 605
BsmAI GTCTC 3 cut(s) 317, 387, 896
BsmFI GGGAC 2 cut(s) 159, 582
BsmI GAATGC 3 cut(s) 40, 424, 1095
BsnI GGCC 2 cut(s) 304, 824
Bso31I GGTCTC 3 cut(s) 317, 387, 896
Bsp1286I GDGCHC 1 cut(s) 973
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 4 cut(s) 578, 580, 1084, 1122
BspANI GGCC 2 cut(s) 304, 824
BspCNI CTCAG 1 cut(s) 934
BspDI ATCGAT 2 cut(s) 519, 869
BspFNI CGCG 2 cut(s) 580, 1122
BspLI GGNNCC 1 cut(s) 598
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 2 cut(s) 845, 1016
BspTNI GGTCTC 3 cut(s) 317, 387, 896
BsrDI GCAATG 2 cut(s) 639, 960
BsrFI RCCGGY 1 cut(s) 396
BsrI ACTGG 1 cut(s) 294
BssAI RCCGGY 1 cut(s) 396
BssECI CCNNGG 5 cut(s) 107, 220, 578, 825, 936
BssT1I CCWWGG 3 cut(s) 107, 220, 936
Bst2UI CCWGG 1 cut(s) 826
Bst4CI ACNGT 4 cut(s) 181, 447, 596, 814
BstBAI YACGTR 2 cut(s) 931, 1022
BstDEI CTNAG 5 cut(s) 19, 88, 665, 695, 942
BstDSI CCRYGG 2 cut(s) 220, 578
BstF5I GGATG 3 cut(s) 36, 102, 676
BstFNI CGCG 2 cut(s) 580, 1122
BstHHI GCGC 1 cut(s) 1122
BstMAI GTCTC 3 cut(s) 317, 387, 896
BstMCI CGRYCG 1 cut(s) 873
BstMWI GCNNNNNNNGC 3 cut(s) 691, 700, 1083
BstNI CCWGG 1 cut(s) 826
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 824
BstSFI CTRYAG 2 cut(s) 267, 897
BstSLI GKGCMC 1 cut(s) 973
BstSNI TACGTA 1 cut(s) 931
BstUI CGCG 2 cut(s) 580, 1122
BstV1I GCAGC 6 cut(s) 253, 281, 305, 434, 561, 631
BstX2I RGATCY 1 cut(s) 781
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 1 cut(s) 781
Bsu15I ATCGAT 2 cut(s) 519, 869
BsuI GTATCC 1 cut(s) 943
BsuRI GGCC 2 cut(s) 304, 824
BsuTUI ATCGAT 2 cut(s) 519, 869
BtgI CCRYGG 2 cut(s) 220, 578
BtsCI GGATG 3 cut(s) 36, 102, 676
BtsIMutI CAGTG 1 cut(s) 287
CfoI GCGC 1 cut(s) 1122
Cfr10I RCCGGY 1 cut(s) 396
Cfr13I GGNCC 3 cut(s) 224, 596, 822
Cfr42I CCGCGG 1 cut(s) 581
ClaI ATCGAT 2 cut(s) 519, 869
Csp6I GTAC 4 cut(s) 234, 298, 334, 1019
CspAI ACCGGT 1 cut(s) 396
CviAII CATG 5 cut(s) 221, 495, 536, 876, 951
CviQI GTAC 4 cut(s) 234, 298, 334, 1019
DdeI CTNAG 5 cut(s) 19, 88, 665, 695, 942
DraI TTTAAA 1 cut(s) 633
Eco105I TACGTA 1 cut(s) 931
Eco130I CCWWGG 3 cut(s) 107, 220, 936
Eco31I GGTCTC 3 cut(s) 317, 387, 896
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 224, 596
EcoRI GAATTC 1 cut(s) 911
EcoRII CCWGG 1 cut(s) 824
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 3 cut(s) 107, 220, 936
ErhI CCWWGG 3 cut(s) 107, 220, 936
FaeI CATG 5 cut(s) 224, 498, 539, 879, 954
FaqI GGGAC 2 cut(s) 159, 582
FatI CATG 5 cut(s) 220, 494, 535, 875, 950
FauI CCCGC 1 cut(s) 1091
FbaI TGATCA 3 cut(s) 552, 619, 688
Fnu4HI GCNGC 7 cut(s) 267, 270, 319, 423, 575, 578, 645
FokI GGATG 3 cut(s) 43, 89, 683
Fsp4HI GCNGC 7 cut(s) 267, 270, 319, 423, 575, 578, 645
FspBI CTAG 1 cut(s) 779
GlaI GCGC 1 cut(s) 1121
GluI GCNGC 7 cut(s) 267, 270, 319, 423, 575, 578, 645
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 2 cut(s) 304, 824
HapII CCGG 2 cut(s) 388, 397
HhaI GCGC 1 cut(s) 1122
Hin1II CATG 5 cut(s) 224, 498, 539, 879, 954
Hin6I GCGC 1 cut(s) 1120
HinP1I GCGC 1 cut(s) 1120
HinfI GANTC 6 cut(s) 99, 127, 371, 381, 583, 1031
HpaII CCGG 2 cut(s) 388, 397
HphI GGTGA 2 cut(s) 786, 1095
Hpy166II GTNNAC 5 cut(s) 25, 227, 334, 662, 971
Hpy188I TCNGA 3 cut(s) 757, 855, 1135
Hpy188III TCNNGA 7 cut(s) 255, 342, 560, 566, 611, 1006, 1143
Hpy8I GTNNAC 5 cut(s) 25, 227, 334, 662, 971
HpyCH4III ACNGT 4 cut(s) 181, 447, 596, 814
HpyCH4IV ACGT 3 cut(s) 930, 1021, 1047
HpyCH4V TGCA 9 cut(s) 56, 269, 422, 674, 859, 965, 971, 1043, 1093
HpyF10VI GCNNNNNNNGC 3 cut(s) 691, 700, 1083
HpyF3I CTNAG 5 cut(s) 19, 88, 665, 695, 942
HpySE526I ACGT 3 cut(s) 930, 1021, 1047
Hsp92II CATG 5 cut(s) 224, 498, 539, 879, 954
HspAI GCGC 1 cut(s) 1120
Ksp22I TGATCA 3 cut(s) 552, 619, 688
KspI CCGCGG 1 cut(s) 581
LmnI GCTCC 1 cut(s) 746
Lsp1109I GCAGC 6 cut(s) 253, 281, 305, 434, 561, 631
LweI GCATC 4 cut(s) 525, 661, 672, 846
MaeI CTAG 1 cut(s) 779
MaeII ACGT 3 cut(s) 930, 1021, 1047
MaeIII GTNAC 3 cut(s) 80, 792, 1101
MboII GAAGA 4 cut(s) 61, 207, 432, 1063
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 1 cut(s) 973
MluCI AATT 5 cut(s) 258, 277, 764, 905, 911
MlyI GAGTC 2 cut(s) 136, 1040
MnlI CCTC 6 cut(s) 151, 214, 262, 286, 441, 598
MroXI GAANNNNTTC 1 cut(s) 1129
MseI TTAA 6 cut(s) 123, 185, 276, 450, 632, 818
MspA1I CMGCKG 2 cut(s) 580, 1077
MspI CCGG 2 cut(s) 388, 397
MspR9I CCNGG 1 cut(s) 826
Mva1269I GAATGC 3 cut(s) 40, 424, 1095
MvaI CCWGG 1 cut(s) 826
MvnI CGCG 2 cut(s) 580, 1122
MwoI GCNNNNNNNGC 3 cut(s) 691, 700, 1083
NcoI CCATGG 1 cut(s) 220
NlaIII CATG 5 cut(s) 224, 498, 539, 879, 954
NlaIV GGNNCC 1 cut(s) 598
NmuCI GTSAC 2 cut(s) 792, 1101
NspI RCATGY 1 cut(s) 539
PciI ACATGT 1 cut(s) 535
PctI GAATGC 3 cut(s) 40, 424, 1095
PdmI GAANNNNTTC 1 cut(s) 1129
PfeI GAWTC 4 cut(s) 99, 371, 381, 583
PflMI CCANNNNNTGG 1 cut(s) 481
PinAI ACCGGT 1 cut(s) 396
PkrI GCNGC 7 cut(s) 268, 271, 320, 424, 576, 579, 646
Ple19I CGATCG 1 cut(s) 873
PleI GAGTC 2 cut(s) 135, 1039
PpsI GAGTC 2 cut(s) 135, 1039
Ppu21I YACGTR 2 cut(s) 931, 1022
PscI ACATGT 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 824
PspGI CCWGG 1 cut(s) 824
PspN4I GGNNCC 1 cut(s) 598
PspPI GGNCC 3 cut(s) 224, 596, 822
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 781
PvuI CGATCG 1 cut(s) 873
PvuII CAGCTG 1 cut(s) 1077
RsaI GTAC 4 cut(s) 235, 299, 335, 1020
RsaNI GTAC 4 cut(s) 234, 298, 334, 1019
SacII CCGCGG 1 cut(s) 581
SaqAI TTAA 6 cut(s) 123, 185, 276, 450, 632, 818
SatI GCNGC 7 cut(s) 267, 270, 319, 423, 575, 578, 645
Sau96I GGNCC 3 cut(s) 224, 596, 822
SchI GAGTC 2 cut(s) 136, 1040
ScrFI CCNGG 1 cut(s) 826
SduI GDGCHC 1 cut(s) 973
SfaNI GCATC 4 cut(s) 525, 661, 672, 846
SfcI CTRYAG 2 cut(s) 267, 897
Sfr303I CCGCGG 1 cut(s) 581
SgrBI CCGCGG 1 cut(s) 581
SinI GGWCC 2 cut(s) 224, 596
SmlI CTYRAG 2 cut(s) 253, 611
SmoI CTYRAG 2 cut(s) 253, 611
SnaBI TACGTA 1 cut(s) 931
Sse9I AATT 5 cut(s) 258, 277, 764, 905, 911
SsiI CCGC 4 cut(s) 578, 580, 1084, 1122
SspMI CTAG 1 cut(s) 779
StyD4I CCNGG 1 cut(s) 824
StyI CCWWGG 3 cut(s) 107, 220, 936
TaaI ACNGT 4 cut(s) 181, 447, 596, 814
TaiI ACGT 3 cut(s) 933, 1024, 1050
TaqI TCGA 3 cut(s) 519, 771, 869
TasI AATT 5 cut(s) 258, 277, 764, 905, 911
TatI WGTACW 2 cut(s) 297, 333
TauI GCSGC 1 cut(s) 580
TfiI GAWTC 4 cut(s) 99, 371, 381, 583
Tru1I TTAA 6 cut(s) 123, 185, 276, 450, 632, 818
Tru9I TTAA 6 cut(s) 123, 185, 276, 450, 632, 818
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 2 cut(s) 792, 1101
TseI GCWGC 6 cut(s) 266, 269, 318, 422, 574, 644
Tsp45I GTSAC 2 cut(s) 792, 1101
TspDTI ATGAA 4 cut(s) 431, 448, 628, 777
TspRI CASTG 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 481
VneI GTGCAC 1 cut(s) 969
VpaK11BI GGWCC 2 cut(s) 224, 596
XapI RAATTY 2 cut(s) 258, 911
XceI RCATGY 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 1129
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.