DNA polymerase III
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1027 |
| AciI | CCGC | 6 cut(s) | 13, 16, 695, 1025, 1067, 2398 |
| AclWI | GGATC | 6 cut(s) | 77, 90, 1197, 1698, 1709, 2327 |
| AcuI | CTGAAG | 3 cut(s) | 393, 1812, 2180 |
| AcvI | CACGTG | 1 cut(s) | 479 |
| AdeI | CACNNNGTG | 2 cut(s) | 431, 1382 |
| AfaI | GTAC | 6 cut(s) | 834, 1033, 1675, 1999, 2331, 2462 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 784 |
| AflIII | ACRYGT | 3 cut(s) | 476, 478, 1333 |
| AjiI | CACGTC | 1 cut(s) | 2435 |
| AjnI | CCWGG | 2 cut(s) | 1590, 1688 |
| Alw26I | GTCTC | 8 cut(s) | 78, 214, 972, 1115, 1146, 1185, 1401, 1621 |
| AlwI | GGATC | 6 cut(s) | 77, 90, 1197, 1698, 1709, 2327 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 741, 1846 |
| Ama87I | CYCGRG | 1 cut(s) | 1707 |
| AoxI | GGCC | 5 cut(s) | 920, 1021, 1100, 1587, 1686 |
| ApeKI | GCWGC | 8 cut(s) | 738, 741, 1064, 1220, 1735, 1925, 1933, 1936 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 182, 1805, 1865, 2443 |
| AspA2I | CCTAGG | 1 cut(s) | 896 |
| AspS9I | GGNCC | 3 cut(s) | 1022, 1588, 1686 |
| AsuC2I | CCSGG | 2 cut(s) | 1708, 1709 |
| AsuHPI | GGTGA | 2 cut(s) | 79, 620 |
| AvaI | CYCGRG | 1 cut(s) | 1707 |
| AvrII | CCTAGG | 1 cut(s) | 896 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 430, 463 |
| BamHI | GGATCC | 1 cut(s) | 82 |
| BbrPI | CACGTG | 1 cut(s) | 479 |
| BbsI | GAAGAC | 2 cut(s) | 1333, 1947 |
| BbvCI | CCTCAGC | 1 cut(s) | 643 |
| BbvI | GCAGC | 8 cut(s) | 725, 728, 1051, 1232, 1747, 1920, 1937, 1948 |
| BccI | CCATC | 7 cut(s) | 2, 94, 1775, 1961, 2084, 2238, 2380 |
| BciT130I | CCWGG | 2 cut(s) | 1592, 1690 |
| BciVI | GTATCC | 1 cut(s) | 451 |
| BclI | TGATCA | 3 cut(s) | 1350, 1483, 1552 |
| BcnI | CCSGG | 2 cut(s) | 1708, 1709 |
| BcoDI | GTCTC | 8 cut(s) | 78, 214, 972, 1115, 1146, 1185, 1401, 1621 |
| BfmI | CTRYAG | 6 cut(s) | 241, 442, 705, 1923, 1934, 2121 |
| BfuI | GTATCC | 1 cut(s) | 451 |
| BlnI | CCTAGG | 1 cut(s) | 896 |
| BlpI | GCTNAGC | 1 cut(s) | 1940 |
| Bme1390I | CCNGG | 4 cut(s) | 1592, 1690, 1708, 1709 |
| BmeT110I | CYCGRG | 1 cut(s) | 1707 |
| BmgBI | CACGTC | 1 cut(s) | 2435 |
| BmgT120I | GGNCC | 3 cut(s) | 1022, 1588, 1686 |
| BmiI | GGNNCC | 1 cut(s) | 84 |
| BmrFI | CCNGG | 4 cut(s) | 1592, 1690, 1708, 1709 |
| BmsI | GCATC | 7 cut(s) | 643, 683, 691, 1269, 1417, 1525, 1536 |
| BoxI | GACNNNNGTC | 2 cut(s) | 479, 2030 |
| BpiI | GAAGAC | 2 cut(s) | 1333, 1947 |
| BpmI | CTGGAG | 1 cut(s) | 1215 |
| Bpu10I | CCTNAGC | 1 cut(s) | 643 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1940 |
| BpuEI | CTTGAG | 3 cut(s) | 143, 1036, 2132 |
| BpuMI | CCSGG | 2 cut(s) | 1708, 1709 |
| Bsa29I | ATCGAT | 1 cut(s) | 1365 |
| BsaAI | YACGTR | 1 cut(s) | 479 |
| BsaBI | GATNNNNATC | 2 cut(s) | 714, 798 |
| BsaI | GGTCTC | 5 cut(s) | 78, 214, 972, 1115, 1401 |
| BsaJI | CCNNGG | 7 cut(s) | 896, 1018, 1590, 1689, 1707, 1962, 2197 |
| BsaWI | WCCGGW | 1 cut(s) | 2059 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 892, 922 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 784 |
| Bse1I | ACTGG | 3 cut(s) | 1232, 2277, 2434 |
| Bse3DI | GCAATG | 3 cut(s) | 1503, 2053, 2271 |
| Bse8I | GATNNNNATC | 2 cut(s) | 714, 798 |
| BseBI | CCWGG | 2 cut(s) | 1592, 1690 |
| BseCI | ATCGAT | 1 cut(s) | 1365 |
| BseDI | CCNNGG | 7 cut(s) | 896, 1018, 1590, 1689, 1707, 1962, 2197 |
| BseGI | GGATG | 7 cut(s) | 13, 502, 793, 1540, 1786, 1972, 2230 |
| BseJI | GATNNNNATC | 2 cut(s) | 714, 798 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 784 |
| BseMI | GCAATG | 3 cut(s) | 1503, 2053, 2271 |
| BseNI | ACTGG | 3 cut(s) | 1232, 2277, 2434 |
| BseRI | GAGGAG | 4 cut(s) | 76, 267, 862, 1106 |
| BseXI | GCAGC | 8 cut(s) | 725, 728, 1051, 1232, 1747, 1920, 1937, 1948 |
| BsgI | GTGCAG | 1 cut(s) | 1404 |
| Bsh1236I | CGCG | 1 cut(s) | 1027 |
| BshFI | GGCC | 5 cut(s) | 922, 1023, 1102, 1589, 1688 |
| BshVI | ATCGAT | 1 cut(s) | 1365 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1707 |
| BsiSI | CCGG | 2 cut(s) | 1708, 2060 |
| BslFI | GGGAC | 1 cut(s) | 960 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 784 |
| BsmAI | GTCTC | 8 cut(s) | 78, 214, 972, 1115, 1146, 1185, 1401, 1621 |
| BsmFI | GGGAC | 1 cut(s) | 960 |
| BsmI | GAATGC | 3 cut(s) | 19, 1222, 2079 |
| BsnI | GGCC | 5 cut(s) | 922, 1023, 1102, 1589, 1688 |
| Bso31I | GGTCTC | 5 cut(s) | 78, 214, 972, 1115, 1401 |
| BsoBI | CYCGRG | 1 cut(s) | 1707 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1940 |
| Bsp19I | CCATGG | 1 cut(s) | 1018 |
| BspACI | CCGC | 6 cut(s) | 13, 16, 695, 1025, 1067, 2398 |
| BspANI | GGCC | 5 cut(s) | 922, 1023, 1102, 1589, 1688 |
| BspDI | ATCGAT | 1 cut(s) | 1365 |
| BspFNI | CGCG | 1 cut(s) | 1027 |
| BspLI | GGNNCC | 1 cut(s) | 84 |
| BspMAI | CTGCAG | 3 cut(s) | 446, 1927, 1938 |
| BspPI | GGATC | 6 cut(s) | 77, 90, 1197, 1698, 1709, 2327 |
| BspTNI | GGTCTC | 5 cut(s) | 78, 214, 972, 1115, 1401 |
| BsrDI | GCAATG | 3 cut(s) | 1503, 2053, 2271 |
| BsrI | ACTGG | 3 cut(s) | 1232, 2277, 2434 |
| BssECI | CCNNGG | 7 cut(s) | 896, 1018, 1590, 1689, 1707, 1962, 2197 |
| BssT1I | CCWWGG | 4 cut(s) | 896, 1018, 1962, 2197 |
| Bst2UI | CCWGG | 2 cut(s) | 1592, 1690 |
| Bst4CI | ACNGT | 5 cut(s) | 573, 779, 1303, 1395, 1678 |
| Bst6I | CTCTTC | 4 cut(s) | 399, 1183, 1461, 2108 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 636 |
| BstBAI | YACGTR | 1 cut(s) | 479 |
| BstC8I | GCNNGC | 3 cut(s) | 1025, 1740, 1817 |
| BstDSI | CCRYGG | 1 cut(s) | 1018 |
| BstF5I | GGATG | 7 cut(s) | 13, 502, 793, 1540, 1786, 1972, 2230 |
| BstFNI | CGCG | 1 cut(s) | 1027 |
| BstMAI | GTCTC | 8 cut(s) | 78, 214, 972, 1115, 1146, 1185, 1401, 1621 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 636, 653, 692, 701, 1436, 1555, 1564, 2397 |
| BstNI | CCWGG | 2 cut(s) | 1592, 1690 |
| BstNSI | RCATGY | 1 cut(s) | 1337 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 479, 2030 |
| BstSCI | CCNGG | 4 cut(s) | 1590, 1688, 1706, 1707 |
| BstSFI | CTRYAG | 6 cut(s) | 241, 442, 705, 1923, 1934, 2121 |
| BstUI | CGCG | 1 cut(s) | 1027 |
| BstV1I | GCAGC | 8 cut(s) | 725, 728, 1051, 1232, 1747, 1920, 1937, 1948 |
| BstV2I | GAAGAC | 2 cut(s) | 1333, 1947 |
| BstX2I | RGATCY | 3 cut(s) | 82, 1202, 1703 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 194 |
| BstYI | RGATCY | 3 cut(s) | 82, 1202, 1703 |
| Bsu15I | ATCGAT | 1 cut(s) | 1365 |
| BsuI | GTATCC | 1 cut(s) | 451 |
| BsuRI | GGCC | 5 cut(s) | 922, 1023, 1102, 1589, 1688 |
| BsuTUI | ATCGAT | 1 cut(s) | 1365 |
| BtgI | CCRYGG | 1 cut(s) | 1018 |
| BtrI | CACGTC | 1 cut(s) | 2435 |
| BtsCI | GGATG | 7 cut(s) | 13, 502, 793, 1540, 1786, 1972, 2230 |
| BtsI | GCAGTG | 1 cut(s) | 1392 |
| BtsIMutI | CAGTG | 4 cut(s) | 56, 436, 578, 1392 |
| Cac8I | GCNNGC | 3 cut(s) | 1025, 1740, 1817 |
| CaiI | CAGNNNCTG | 2 cut(s) | 741, 1846 |
| Cfr13I | GGNCC | 3 cut(s) | 1022, 1588, 1686 |
| Cfr9I | CCCGGG | 1 cut(s) | 1707 |
| ClaI | ATCGAT | 1 cut(s) | 1365 |
| Csp6I | GTAC | 6 cut(s) | 833, 1032, 1674, 1998, 2330, 2461 |
| CviQI | GTAC | 6 cut(s) | 833, 1032, 1674, 1998, 2330, 2461 |
| DraIII | CACNNNGTG | 2 cut(s) | 431, 1382 |
| Eam1104I | CTCTTC | 4 cut(s) | 399, 1183, 1461, 2108 |
| EarI | CTCTTC | 4 cut(s) | 399, 1183, 1461, 2108 |
| Eco130I | CCWWGG | 4 cut(s) | 896, 1018, 1962, 2197 |
| Eco31I | GGTCTC | 5 cut(s) | 78, 214, 972, 1115, 1401 |
| Eco32I | GATATC | 1 cut(s) | 1406 |
| Eco57I | CTGAAG | 3 cut(s) | 393, 1812, 2180 |
| Eco72I | CACGTG | 1 cut(s) | 479 |
| Eco88I | CYCGRG | 1 cut(s) | 1707 |
| EcoRI | GAATTC | 2 cut(s) | 319, 2222 |
| EcoRII | CCWGG | 2 cut(s) | 1590, 1688 |
| EcoRV | GATATC | 1 cut(s) | 1406 |
| EcoT14I | CCWWGG | 4 cut(s) | 896, 1018, 1962, 2197 |
| ErhI | CCWWGG | 4 cut(s) | 896, 1018, 1962, 2197 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1458, 1490 |
| FaqI | GGGAC | 1 cut(s) | 960 |
| FauI | CCCGC | 2 cut(s) | 1032, 2405 |
| FauNDI | CATATG | 1 cut(s) | 2108 |
| FbaI | TGATCA | 3 cut(s) | 1350, 1483, 1552 |
| FokI | GGATG | 7 cut(s) | 20, 509, 800, 1547, 1793, 1979, 2217 |
| GsuI | CTGGAG | 1 cut(s) | 1215 |
| HaeIII | GGCC | 5 cut(s) | 922, 1023, 1102, 1589, 1688 |
| HapII | CCGG | 2 cut(s) | 1708, 2060 |
| HindIII | AAGCTT | 2 cut(s) | 1370, 1418 |
| HpaII | CCGG | 2 cut(s) | 1708, 2060 |
| HphI | GGTGA | 2 cut(s) | 79, 620 |
| Hpy166II | GTNNAC | 4 cut(s) | 833, 1834, 2282, 2463 |
| Hpy8I | GTNNAC | 4 cut(s) | 833, 1834, 2282, 2463 |
| HpyAV | CCTTC | 4 cut(s) | 185, 1137, 1141, 2074 |
| HpyCH4III | ACNGT | 5 cut(s) | 573, 779, 1303, 1395, 1678 |
| HpyCH4IV | ACGT | 3 cut(s) | 478, 1243, 2434 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 636, 653, 692, 701, 1436, 1555, 1564, 2397 |
| HpySE526I | ACGT | 3 cut(s) | 478, 1243, 2434 |
| Ksp22I | TGATCA | 3 cut(s) | 1350, 1483, 1552 |
| LmnI | GCTCC | 4 cut(s) | 121, 360, 849, 1093 |
| Lsp1109I | GCAGC | 8 cut(s) | 725, 728, 1051, 1232, 1747, 1920, 1937, 1948 |
| LweI | GCATC | 7 cut(s) | 643, 683, 691, 1269, 1417, 1525, 1536 |
| MaeII | ACGT | 3 cut(s) | 478, 1243, 2434 |
| MaeIII | GTNAC | 5 cut(s) | 613, 1239, 1389, 2032, 2415 |
| MfeI | CAATTG | 1 cut(s) | 2208 |
| MflI | RGATCY | 3 cut(s) | 82, 1202, 1703 |
| MlyI | GAGTC | 5 cut(s) | 355, 910, 916, 1858, 1961 |
| MmeI | TCCRAC | 2 cut(s) | 313, 2079 |
| MroXI | GAANNNNTTC | 4 cut(s) | 182, 1805, 1865, 2443 |
| MseI | TTAA | 6 cut(s) | 933, 1158, 1212, 1248, 1422, 1889 |
| MslI | CAYNNNNRTG | 1 cut(s) | 164 |
| MspA1I | CMGCKG | 3 cut(s) | 738, 1738, 2391 |
| MspI | CCGG | 2 cut(s) | 1708, 2060 |
| MspR9I | CCNGG | 4 cut(s) | 1592, 1690, 1708, 1709 |
| MunI | CAATTG | 1 cut(s) | 2208 |
| Mva1269I | GAATGC | 3 cut(s) | 19, 1222, 2079 |
| MvaI | CCWGG | 2 cut(s) | 1592, 1690 |
| MvnI | CGCG | 1 cut(s) | 1027 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 636, 653, 692, 701, 1436, 1555, 1564, 2397 |
| NciI | CCSGG | 2 cut(s) | 1708, 1709 |
| NcoI | CCATGG | 1 cut(s) | 1018 |
| NdeI | CATATG | 1 cut(s) | 2108 |
| NlaIV | GGNNCC | 1 cut(s) | 84 |
| NmuCI | GTSAC | 4 cut(s) | 1239, 1389, 2032, 2415 |
| NspI | RCATGY | 1 cut(s) | 1337 |
| PciI | ACATGT | 1 cut(s) | 1333 |
| PctI | GAATGC | 3 cut(s) | 19, 1222, 2079 |
| PdmI | GAANNNNTTC | 4 cut(s) | 182, 1805, 1865, 2443 |
| PfeI | GAWTC | 9 cut(s) | 171, 392, 762, 1169, 1179, 2102, 2126, 2345, 2444 |
| PleI | GAGTC | 5 cut(s) | 354, 909, 915, 1857, 1960 |
| PmaCI | CACGTG | 1 cut(s) | 479 |
| PmlI | CACGTG | 1 cut(s) | 479 |
| PpsI | GAGTC | 5 cut(s) | 354, 909, 915, 1857, 1960 |
| Ppu21I | YACGTR | 1 cut(s) | 479 |
| PscI | ACATGT | 1 cut(s) | 1333 |
| PshAI | GACNNNNGTC | 2 cut(s) | 479, 2030 |
| Psp6I | CCWGG | 2 cut(s) | 1590, 1688 |
| PspCI | CACGTG | 1 cut(s) | 479 |
| PspGI | CCWGG | 2 cut(s) | 1590, 1688 |
| PspN4I | GGNNCC | 1 cut(s) | 84 |
| PspPI | GGNCC | 3 cut(s) | 1022, 1588, 1686 |
| PstI | CTGCAG | 3 cut(s) | 446, 1927, 1938 |
| PstNI | CAGNNNCTG | 2 cut(s) | 741, 1846 |
| PsuI | RGATCY | 3 cut(s) | 82, 1202, 1703 |
| PvuII | CAGCTG | 3 cut(s) | 738, 1738, 2391 |
| RsaI | GTAC | 6 cut(s) | 834, 1033, 1675, 1999, 2331, 2462 |
| RsaNI | GTAC | 6 cut(s) | 833, 1032, 1674, 1998, 2330, 2461 |
| RseI | CAYNNNNRTG | 1 cut(s) | 164 |
| SaqAI | TTAA | 6 cut(s) | 933, 1158, 1212, 1248, 1422, 1889 |
| Sau96I | GGNCC | 3 cut(s) | 1022, 1588, 1686 |
| SchI | GAGTC | 5 cut(s) | 355, 910, 916, 1858, 1961 |
| ScrFI | CCNGG | 4 cut(s) | 1592, 1690, 1708, 1709 |
| SfaNI | GCATC | 7 cut(s) | 643, 683, 691, 1269, 1417, 1525, 1536 |
| SfcI | CTRYAG | 6 cut(s) | 241, 442, 705, 1923, 1934, 2121 |
| SmaI | CCCGGG | 1 cut(s) | 1709 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 164 |
| SmlI | CTYRAG | 3 cut(s) | 122, 1051, 2147 |
| SmoI | CTYRAG | 3 cut(s) | 122, 1051, 2147 |
| SsiI | CCGC | 6 cut(s) | 13, 16, 695, 1025, 1067, 2398 |
| SspI | AATATT | 1 cut(s) | 1866 |
| StyD4I | CCNGG | 4 cut(s) | 1590, 1688, 1706, 1707 |
| StyI | CCWWGG | 4 cut(s) | 896, 1018, 1962, 2197 |
| TaaI | ACNGT | 5 cut(s) | 573, 779, 1303, 1395, 1678 |
| TaiI | ACGT | 3 cut(s) | 481, 1246, 2437 |
| TaqI | TCGA | 3 cut(s) | 1186, 1365, 2052 |
| TatI | WGTACW | 3 cut(s) | 832, 1673, 2460 |
| TauI | GCSGC | 3 cut(s) | 16, 19, 1070 |
| TfiI | GAWTC | 9 cut(s) | 171, 392, 762, 1169, 1179, 2102, 2126, 2345, 2444 |
| Tru1I | TTAA | 6 cut(s) | 933, 1158, 1212, 1248, 1422, 1889 |
| Tru9I | TTAA | 6 cut(s) | 933, 1158, 1212, 1248, 1422, 1889 |
| TscAI | CASTG | 4 cut(s) | 63, 436, 578, 1392 |
| TseFI | GTSAC | 4 cut(s) | 1239, 1389, 2032, 2415 |
| TseI | GCWGC | 8 cut(s) | 738, 741, 1064, 1220, 1735, 1925, 1933, 1936 |
| Tsp45I | GTSAC | 4 cut(s) | 1239, 1389, 2032, 2415 |
| TspMI | CCCGGG | 1 cut(s) | 1707 |
| TspRI | CASTG | 4 cut(s) | 63, 436, 578, 1392 |
| XbaI | TCTAGA | 1 cut(s) | 986 |
| XceI | RCATGY | 1 cut(s) | 1337 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1025, 1280 |
| XmaI | CCCGGG | 1 cut(s) | 1707 |
| XmaJI | CCTAGG | 1 cut(s) | 896 |
| XmnI | GAANNNNTTC | 4 cut(s) | 182, 1805, 1865, 2443 |