Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

56105700 .. 56106463

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG418000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGAAACACACAAGAGAGAGGGCAGAGCCTCAAGATTCTTGACCCTACTTCATGCAATGTCAACACATCAGACAAGTTGGGAATGCAAAAGGATATTGATGAACAGTTGGATTCCGTATGGAAGAGAGCTATAGATTTATGCCAATCCAAGTCATTCAAGAACTTTTTGAGGAAACAAGGAAGATTGTCGTCTCTATTTGTGAATCAAGGTCTCGCTATAGCTGAATTGGAATTCTGCCACCCTGATTATGCATCCAAGGCTGAGAAGTCATGGAAAATCATTGCAAGTGCACTCCAATCTCTATTCGGTTGTAATGTGGAGATCAGGATCAATCTTGTACGTGCTACCGAGTCAAAGTATGCAAACGTGAAGAAGCATCTTTTAGGTTGTTCAGCTGTTCCTGCAGAATGCAGCAAAAGTCACCATCTTTCTGTGAGCGTGGAAGTGGTTCAGACTACTCTGAGTACACATCGGAAAAGCCTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

163

Amino Acids

18.29

Weight (kDa)

9.18

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaA_N-like_STI	PF23007	30 - 113	7.6e-32	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	2 cut(s)	342, 469
AgsI	TTSAA	1 cut(s)	160
AluBI	AGCT	3 cut(s)	131, 224, 398
AluI	AGCT	3 cut(s)	131, 224, 398
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	2 cut(s)	198, 218
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	338
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	416
BaeGI	GKGCMC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	426
BccI	CCATC	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	198, 218
BfmI	CTRYAG	3 cut(s)	132, 219, 405
BisI	GCNGC	1 cut(s)	415
BlsI	GCNGC	1 cut(s)	416
BmsI	GCATC	2 cut(s)	263, 388
BpuEI	CTTGAG	1 cut(s)	17
BsaAI	YACGTR	1 cut(s)	344
BsaBI	GATNNNNATC	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	258
Bse3DI	GCAATG	2 cut(s)	64, 282
Bse8I	GATNNNNATC	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	1 cut(s)	254
BseJI	GATNNNNATC	1 cut(s)	329
BseMI	GCAATG	2 cut(s)	64, 282
BseMII	CTCAG	2 cut(s)	255, 455
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	198, 218
BsmBI	CGTCTC	1 cut(s)	198
BsmI	GAATGC	2 cut(s)	90, 416
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	324, 330
BspCNI	CTCAG	2 cut(s)	256, 456
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	64, 282
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	2 cut(s)	324, 330
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	264, 464
BstF5I	GGATG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	327, 333
BstMAI	GTCTC	2 cut(s)	198, 218
BstMBI	GATC	2 cut(s)	324, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 404
BstSFI	CTRYAG	3 cut(s)	132, 219, 405
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	341, 468
CviAII	CATG	2 cut(s)	54, 273
CviJI	RGCY	6 cut(s)	30, 131, 224, 263, 398, 483
CviKI_1	RGCY	6 cut(s)	30, 131, 224, 263, 398, 483
CviQI	GTAC	2 cut(s)	341, 468
DdeI	CTNAG	2 cut(s)	264, 464
DpnI	GATC	2 cut(s)	326, 332
DpnII	GATC	2 cut(s)	324, 330
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	2 cut(s)	57, 276
FaiI	YATR	9 cut(s)	55, 121, 134, 142, 221, 252, 274, 363, 487
FatI	CATG	2 cut(s)	53, 272
Fnu4HI	GCNGC	1 cut(s)	415
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	415
GluI	GCNGC	1 cut(s)	415
Hin1II	CATG	2 cut(s)	57, 276
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	4 cut(s)	37, 113, 205, 353
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	3 cut(s)	64, 293, 470
Hpy188I	TCNGA	4 cut(s)	73, 456, 465, 477
Hpy188III	TCNNGA	4 cut(s)	34, 41, 160, 328
Hpy8I	GTNNAC	3 cut(s)	64, 293, 470
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	2 cut(s)	343, 369
HpyCH4V	TGCA	8 cut(s)	57, 88, 254, 287, 293, 365, 407, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 404
HpyF3I	CTNAG	2 cut(s)	264, 464
HpySE526I	ACGT	2 cut(s)	343, 369
Hsp92II	CATG	2 cut(s)	57, 276
Kzo9I	GATC	2 cut(s)	324, 330
LpnPI	CCDG	3 cut(s)	258, 313, 417
Lsp1109I	GCAGC	1 cut(s)	426
LweI	GCATC	2 cut(s)	263, 388
MaeII	ACGT	2 cut(s)	343, 369
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	2 cut(s)	326, 332
MboI	GATC	2 cut(s)	324, 330
MboII	GAAGA	3 cut(s)	136, 195, 385
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	2 cut(s)	227, 233
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	14, 41, 165
Mph1103I	ATGCAT	1 cut(s)	256
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	490
MspA1I	CMGCKG	1 cut(s)	398
Mva1269I	GAATGC	2 cut(s)	90, 416
MwoI	GCNNNNNNNGC	2 cut(s)	260, 404
NdeII	GATC	2 cut(s)	324, 330
NlaIII	CATG	2 cut(s)	57, 276
NmuCI	GTSAC	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	256
PctI	GAATGC	2 cut(s)	90, 416
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	37, 113, 205
PkrI	GCNGC	1 cut(s)	416
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	342, 469
RsaNI	GTAC	2 cut(s)	341, 468
SaqAI	TTAA	1 cut(s)	490
SatI	GCNGC	1 cut(s)	415
Sau3AI	GATC	2 cut(s)	324, 330
SchI	GAGTC	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	7 cut(s)	133, 214, 226, 346, 372, 391, 400
SfaNI	GCATC	2 cut(s)	263, 388
SfcI	CTRYAG	3 cut(s)	132, 219, 405
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	227, 233
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	2 cut(s)	346, 372
TasI	AATT	2 cut(s)	227, 233
TatI	WGTACW	1 cut(s)	467
TfiI	GAWTC	3 cut(s)	37, 113, 205
Tru1I	TTAA	1 cut(s)	490
Tru9I	TTAA	1 cut(s)	490
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	414
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	42, 117
TspGWI	ACGGA	1 cut(s)	106
VneI	GTGCAC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	450
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.