Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

56104689 .. 56105524

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG417900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTTTATTCTTCAAAGGAAGAGGGAAGCAACCAGGACTGCCAGGTTTTATCTTTTCATCAACCTGAACATCAACCAAGGTGTTTCCCGAGAACTCTGAGGATTCAAAAGAAGTTTTGTTCCACAGATGCTACTCAGGTGACTTGTTGTACCAAACTACAAAACAAGTTTGCAATCCCAACTAGGACATCTTTTGACCCCTGTCTTTTGGGAAGAGATTCATATGCTTTCTGCAGCGGCTCTGACAATGGGAACAACGCCGGCAACTATAAGGAAGAGTTGAAGGAAAATTCAGGTGTGCTTTGTTGGAAAACCCTGCTTCCCTCAAGAAAGGATTGGCAGCTGAGGCAACAACAGCAAAATTCGAAACTAGTTGGGTGGGTTCTTCCATGTGCAACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

134

Amino Acids

15.26

Weight (kDa)

8.76

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	289, 361
AfaI	GTAC	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	15, 107, 283
AhlI	ACTAGT	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	33, 42
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Ama87I	CYCGRG	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	234, 340
ApoI	RAATTY	2 cut(s)	289, 361
Asp700I	GAANNNNTTC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	88
BbvCI	CCTCAGC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	246, 352
BciT130I	CCWGG	2 cut(s)	35, 44
BcuI	ACTAGT	1 cut(s)	370
BfaI	CTAG	2 cut(s)	183, 371
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	3 cut(s)	235, 238, 341
BlsI	GCNGC	3 cut(s)	236, 239, 342
Bme1390I	CCNGG	2 cut(s)	35, 44
BmeT110I	CYCGRG	1 cut(s)	88
BmrFI	CCNGG	2 cut(s)	35, 44
BmsI	GCATC	1 cut(s)	118
BoxI	GACNNNNGTC	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	344
Bpu14I	TTCGAA	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	35, 44
BseDI	CCNNGG	1 cut(s)	77
BseMII	CTCAG	3 cut(s)	89, 149, 335
BseXI	GCAGC	2 cut(s)	246, 352
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	365
BspACI	CCGC	1 cut(s)	237
BspCNI	CTCAG	3 cut(s)	90, 148, 336
BspMAI	CTGCAG	1 cut(s)	236
BspT104I	TTCGAA	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	2 cut(s)	35, 44
Bst6I	CTCTTC	3 cut(s)	15, 208, 270
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	4 cut(s)	98, 135, 344, 402
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 355
BstNI	CCWGG	2 cut(s)	35, 44
BstPAI	GACNNNNGTC	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	33, 42
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	246, 352
Cac8I	GCNNGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	1 cut(s)	390
CviJI	RGCY	2 cut(s)	240, 343
CviKI_1	RGCY	2 cut(s)	240, 343
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	4 cut(s)	98, 135, 344, 402
Eam1104I	CTCTTC	3 cut(s)	15, 208, 270
EarI	CTCTTC	3 cut(s)	15, 208, 270
Eco130I	CCWWGG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	33, 42
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	393
FaiI	YATR	4 cut(s)	223, 225, 270, 391
FatI	CATG	1 cut(s)	389
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	235, 238, 341
Fsp4HI	GCNGC	3 cut(s)	235, 238, 341
FspBI	CTAG	2 cut(s)	183, 371
GluI	GCNGC	3 cut(s)	235, 238, 341
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	1 cut(s)	393
HinfI	GANTC	2 cut(s)	103, 218
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	99, 244
Hpy188III	TCNNGA	2 cut(s)	88, 327
HpyAV	CCTTC	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	173, 234, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 355
HpyF3I	CTNAG	4 cut(s)	98, 135, 344, 402
Hsp92II	CATG	1 cut(s)	393
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Lsp1109I	GCAGC	2 cut(s)	246, 352
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	183, 371
MaeIII	GTNAC	1 cut(s)	139
MboII	GAAGA	5 cut(s)	3, 32, 225, 287, 377
MluCI	AATT	2 cut(s)	289, 361
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	4 cut(s)	16, 93, 334, 339
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	217
MspA1I	CMGCKG	2 cut(s)	237, 343
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	35, 44
MvaI	CCWGG	2 cut(s)	35, 44
MwoI	GCNNNNNNNGC	2 cut(s)	346, 355
NaeI	GCCGGC	1 cut(s)	262
NdeI	CATATG	1 cut(s)	223
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	139
NspV	TTCGAA	1 cut(s)	365
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	103, 218
PkrI	GCNGC	3 cut(s)	236, 239, 342
PshAI	GACNNNNGTC	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	33, 42
PspGI	CCWGG	2 cut(s)	33, 42
PstI	CTGCAG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SatI	GCNGC	3 cut(s)	235, 238, 341
ScrFI	CCNGG	2 cut(s)	35, 44
SetI	ASST	6 cut(s)	48, 67, 83, 141, 298, 345
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SpeI	ACTAGT	1 cut(s)	370
Sse9I	AATT	2 cut(s)	289, 361
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	183, 371
StyD4I	CCNGG	2 cut(s)	33, 42
StyI	CCWWGG	1 cut(s)	77
TaqI	TCGA	1 cut(s)	365
TasI	AATT	2 cut(s)	289, 361
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	103, 218
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	234, 340
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	47, 210
XapI	RAATTY	2 cut(s)	289, 361
XmnI	GAANNNNTTC	1 cut(s)	217
XspI	CTAG	2 cut(s)	183, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.