Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Forward (+)

30134206 .. 30139071

Gene Structure 4866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1160000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGGATGGGAGGCGACATTCTGTTGATATTCCTATCTCGAAAACTCTTGTGCAACTGAGGAGGGTGAGGTCTTTAAGGGATCCTGATACTAATTCTATGAGCAAGTACTCTGCTTTGGTTGAGAATGTGAACTGGGAAACGAATTCGAATAATGACATTTCTGTGCAGTTCATGAATAGTTTCCAAGGTGGCTCTGACAAACATCGTTCTTTTAGATCAAAGAATCCGGGTCTGTATGGACTAGGAGGGGATTGCATAGATGATTTTGAATTAGATTGTGCTTTAGGAAAATCTAGGTTTATCTTGCATGAGAATTCAGAGTGGATTGGAAGTACAGGGAGTCGTCTGGTTAGGAGCAAACAAGCTGAAGAATTTGATTTTTCAGGATCAGATAAGGAAGATGTGTATGGAAATAAATCCCTCAGTGATAGACACTGCGGCAGTCAAATGGATAAAGGATTGGCCTTGACATGCGTCAACCCTTTGGAGGATGGGGATTATGAAGCAGCTGGTAGATCATTGCATTTAGAAAGAACAGATCAGATTGCATCAAAGAGACAATCACAACGCAAAAATAATGTAAATTCGTTCAGGGAAGTTGGTAATTTTCGTAAAGTTTGCAGTCCATGCCGCTCAGCAAGTGATTCTCTTTCAAGCCATAGTGCATCTTTATTTGTAAATGAAGAGGCCGATGCCATTGATCACAACCGTCCTAGTTGTGAGGTCAACTGCTGCTGGTCAAGAACCCCTCGATTCAGAGGAGCTAACCTCCCTTTCAACGTAGATGAGTTTCCTTTGTTATACAAGAATGCAGATGAGAGTGCGCTTTATGAACAGAAGAGCTTGAAACACATTGGCAATGAAAGGAGTCCGTATCCTAGGAGTCTGAGTCAGAAATTCAGGCCAAAATCTTTTAATGAATTGGTGGGACAAAATGTAGTAGCGAGGTCTCTTTTGGGAGCTATCTCTAGAGGAAGAATAGCCTCGTTCTATCTATTTCATGGCCCTCGTGGTACAGGAAAGACATCTGCCGCAAGGATTTTTGCTGCTGCGCTAAATTGCCTTTCGCATGAGGAGCATAGGCCATGTGGTCTCTGCTGTGAATGTGTTTTGTACTTTTCTGGAAGGAGTGGGGACATCAAGGAAGTTGATTCTGTGAGAATCAATCGAAGAGACAGGGTTAGATCTCTTATTAAGAATGCAGCTATTCCTCCACTTTCATCACGGTTTAAGGTTTTGATTATTGATGAGTGCCACCTGATGCATGGGGAAACATGGGCAACGGTTTTGAATAGCATAGATAACCTTTCTCAACATGTTGTCTTCGTGATGATCACTCCAGACGTCAATGAGCTTCCCCGAAGTGCAGTTTCACGGTCTCAAAGATTTCACTTTCCAAAGGTTAAGGACGCTGATATTGCAAGCAGATTAGGGAGAATCTGTGTTAAAGAGGGTCTTGAATTTGATCAGGGTGCTGTTGACTTTGTTGCTTCCAAATCGAATGGTTCACTTAGGGATGCAGAGATGGTGCTTGATCAACTAAGTTTACTTGGCAAAAAGGTCACAATGGCCCTGGCATACGAGCTTATTGGAGTCATCTCGGATGATGAATTACTGGGTTTGCTAGATATGGCATTGTCATCCGACACTTCTAATACGGTAATAAAAGCCAGGGAGTTGATGAGATCTCGGGTTGATCCTATGCAACTGATATCACAGTTGGCAAATCTTGTTATGGACATTCTTGCTGGTAAATGTCAGGACAATGTTTCTGAAGTCCGAAAAAAGTTCTGTAGCAGGCACACCTCTGAAGCGGACTTGCAGAAACTGACTTTTGCATTGAGAATATTCTCCGAAACTGAGAAGCAATTAAGGGTGTCCAAAAATCAAACAACATGGCTTACTGCAGCTCTGCTGCAGCTAAGCTCTGTGGAGTCTTCCTCCTCGGATGGAAATGCGGACAGCTTCAAGAATCTTGCCACTTGTTCATGCAAGTTAAATACACCAGACAAGTTGCGCATGCAGAAGGATAGTGATGGAAAGTTGGAAGCCGTATGGAAGAGAGCTACAGATTTATGCCTATCCAATTCACTCAAGAATTTTCTGAAGAAACAAGGAAAATTGTCTTCCTTGCTTCTTGGTCAAGGTTTAGCAATAGCTGAGTTGGAATTCTGCCATCCTGATTATGTATCAAAGGCTGAGAAGTCGTGGAAGATCATTGCAAATTCACTTCAATCTATATGTGGTTGCAATGTGGAGATCAGGATCAATCTTGTACCTTGTGCTTCTGATTCCAAGTATGCGAAAGTGAAGAAGTCATCTTTGAGGTTGTTCAGCTGTTCCCGCAGAATGCAGCAGAAGTCACAGTCATCTACCAAACGTGGAACTGATTCAGACTATTCTGAGTATACATCTGAAAAGCCCATGTTAAGTGACCAACCGACTTTACCTTGCTCCTCTGAGTGTTCTTATAAAATGCCAAATAACTGCAGTGACAGAATGGTGGTGGTAAGTACTTTGAGAAATAGCGAAGGAAATATACTCAGCACAAGGACTGCCTCATCCCACAGATCATTTGAAGATGATATGTCAAAGATACCTGGGGTAGTGGTTGATTCTTCGAAGGAAGAGGGAAGCAACCATGAATTCCAGGTTTTATCTTTTGAAGAACCTGAACATCAACCAAATTGTTTTCCTAGAACTCTGAGGCTTCAAAAGAAGTTCCGTTCGTCAAATGCTTCTCAGACGACCTGTTGCACCAAACAACATAACAAGACTGCATCATATAGCCTAAGCAAGACATCTTTTGGTACATGTCTCGTGGGAAATGATTCATATGTTTTCTGCAGCGGTGCTTGTAATAACACTGACAGCTGTATAAACGAGAATGTACTGAAGAAGAATTCAGCCATGCTCTGTTGGAGAACCCCATGCTTCACTCGGGAAAGGCCTTACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

987

Amino Acids

110.0

Weight (kDa)

8.68

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	311 - 468	1e-22	DNA polymerase III, delta subunit
AAA	PF00004	331 - 462	8.5e-10	ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid	PF22608	473 - 513	4.3e-06	DNA polymerase III clamp loader subunit, ATPase lid domain
DnaA_N-like_STI	PF23007	675 - 758	1.9e-30	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2472
AatII	GACGTC	1 cut(s)	1347
Acc16I	TGCGCA	1 cut(s)	2018
AccBSI	CCGCTC	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	2408
AciI	CCGC	7 cut(s)	438, 631, 1032, 1814, 1958, 2344, 2850
AclWI	GGATC	5 cut(s)	74, 87, 394, 1691, 2273
AcuI	CTGAAG	5 cut(s)	387, 1794, 1830, 2126, 2915
AcyI	GRCGYC	1 cut(s)	1344
AfaI	GTAC	8 cut(s)	107, 334, 1015, 1115, 2277, 2515, 2812, 2892
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflIII	ACRYGT	2 cut(s)	1315, 2813
AjnI	CCWGG	4 cut(s)	1572, 1670, 2599, 2649
Alw26I	GTCTC	6 cut(s)	550, 954, 1097, 1167, 1383, 2822
AlwI	GGATC	5 cut(s)	74, 87, 394, 1691, 2273
AlwNI	CAGNNNCTG	1 cut(s)	1828
Ama87I	CYCGRG	2 cut(s)	1689, 2940
AoxI	GGCC	7 cut(s)	462, 687, 902, 1003, 1082, 1569, 2948
Asp700I	GAANNNNTTC	3 cut(s)	179, 2389, 2830
AspA2I	CCTAGG	1 cut(s)	878
AspLEI	GCGC	3 cut(s)	826, 1054, 2019
AspS9I	GGNCC	2 cut(s)	1004, 1570
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	2 cut(s)	146, 2621
AvaI	CYCGRG	2 cut(s)	1689, 2940
AvrII	CCTAGG	1 cut(s)	878
BamHI	GGATCC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	2523, 2555
BauI	CACGAG	2 cut(s)	1008, 2819
BbsI	GAAGAC	3 cut(s)	1315, 1929, 2118
BccI	CCATC	5 cut(s)	485, 1519, 1943, 2030, 2184
BceAI	ACGGC	1 cut(s)	2036
BciT130I	CCWGG	4 cut(s)	1574, 1672, 2601, 2651
BciVI	GTATCC	1 cut(s)	885
BclI	TGATCA	4 cut(s)	700, 1332, 1465, 1534
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	6 cut(s)	550, 954, 1097, 1167, 1383, 2822
BfaI	CTAG	7 cut(s)	242, 294, 714, 879, 969, 1625, 2697
BfmI	CTRYAG	6 cut(s)	1792, 1905, 1916, 2067, 2488, 2845
BfuI	GTATCC	1 cut(s)	885
BglII	AGATCT	2 cut(s)	1184, 1685
BlnI	CCTAGG	1 cut(s)	878
BlpI	GCTNAGC	2 cut(s)	634, 1922
BmcAI	AGTACT	2 cut(s)	107, 2515
Bme1390I	CCNGG	5 cut(s)	228, 1574, 1672, 2601, 2651
BmeT110I	CYCGRG	2 cut(s)	1689, 2940
BmgT120I	GGNCC	2 cut(s)	1004, 1570
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	5 cut(s)	228, 1574, 1672, 2601, 2651
BmrI	ACTGGG	2 cut(s)	142, 1625
BmsI	GCATC	6 cut(s)	557, 674, 682, 1251, 1507, 2789
BmuI	ACTGGG	2 cut(s)	142, 1625
BoxI	GACNNNNGTC	1 cut(s)	473
BpiI	GAAGAC	3 cut(s)	1315, 1929, 2118
BplI	GAGNNNNNCTC	4 cut(s)	753, 785, 1925, 1957
BpmI	CTGGAG	1 cut(s)	1323
Bpu10I	CCTNAGC	1 cut(s)	2792
Bpu1102I	GCTNAGC	2 cut(s)	634, 1922
Bpu14I	TTCGAA	2 cut(s)	146, 2621
BpuEI	CTTGAG	1 cut(s)	2078
BpuMI	CCSGG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	2264
BsaHI	GRCGYC	1 cut(s)	1344
BsaI	GGTCTC	3 cut(s)	954, 1097, 1383
BsaJI	CCNNGG	6 cut(s)	184, 878, 1572, 1671, 1944, 2600
BsaXI	ACNNNNNCTCC	4 cut(s)	874, 904, 1426, 1456
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	2 cut(s)	137, 1620
Bse3DI	GCAATG	4 cut(s)	518, 865, 2217, 2257
Bse8I	GATNNNNATC	1 cut(s)	2264
BseBI	CCWGG	4 cut(s)	1574, 1672, 2601, 2651
BseDI	CCNNGG	6 cut(s)	184, 878, 1572, 1671, 1944, 2600
BseGI	GGATG	8 cut(s)	10, 496, 1522, 1609, 1640, 1954, 2176, 2561
BseJI	GATNNNNATC	1 cut(s)	2264
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMI	GCAATG	4 cut(s)	518, 865, 2217, 2257
BseNI	ACTGG	2 cut(s)	137, 1620
BseRI	GAGGAG	5 cut(s)	73, 774, 1088, 1933, 2446
BsgI	GTGCAG	2 cut(s)	185, 1386
BshFI	GGCC	7 cut(s)	464, 689, 904, 1005, 1084, 1571, 2950
BsiHKCI	CYCGRG	2 cut(s)	1689, 2940
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	2 cut(s)	942, 1148
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	6 cut(s)	550, 954, 1097, 1167, 1383, 2822
BsmFI	GGGAC	2 cut(s)	942, 1148
BsmI	GAATGC	3 cut(s)	814, 1204, 2355
BsnI	GGCC	7 cut(s)	464, 689, 904, 1005, 1084, 1571, 2950
Bso31I	GGTCTC	3 cut(s)	954, 1097, 1383
BsoBI	CYCGRG	2 cut(s)	1689, 2940
Bsp119I	TTCGAA	2 cut(s)	146, 2621
Bsp1720I	GCTNAGC	2 cut(s)	634, 1922
BspACI	CCGC	7 cut(s)	438, 631, 1032, 1814, 1958, 2344, 2850
BspANI	GGCC	7 cut(s)	464, 689, 904, 1005, 1084, 1571, 2950
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	4 cut(s)	1909, 1920, 2492, 2849
BspPI	GGATC	5 cut(s)	74, 87, 394, 1691, 2273
BspQI	GCTCTTC	1 cut(s)	833
BspT104I	TTCGAA	2 cut(s)	146, 2621
BspTNI	GGTCTC	3 cut(s)	954, 1097, 1383
BsrBI	CCGCTC	1 cut(s)	633
BsrDI	GCAATG	4 cut(s)	518, 865, 2217, 2257
BsrI	ACTGG	2 cut(s)	137, 1620
BssECI	CCNNGG	6 cut(s)	184, 878, 1572, 1671, 1944, 2600
BssNAI	GTATAC	1 cut(s)	2409
BssNI	GRCGYC	1 cut(s)	1344
BssSI	CACGAG	2 cut(s)	1008, 2819
BssT1I	CCWWGG	2 cut(s)	184, 878
Bst1107I	GTATAC	1 cut(s)	2409
Bst2BI	CACGAG	2 cut(s)	1008, 2819
Bst2UI	CCWGG	4 cut(s)	1574, 1672, 2601, 2651
Bst4CI	ACNGT	8 cut(s)	710, 1227, 1285, 1377, 1660, 1719, 2367, 2957
Bst6I	CTCTTC	5 cut(s)	678, 833, 1165, 2054, 2622
BstACI	GRCGYC	1 cut(s)	1344
BstAPI	GCANNNNNTGC	1 cut(s)	627
BstBI	TTCGAA	2 cut(s)	146, 2621
BstC8I	GCNNGC	3 cut(s)	1423, 1799, 2021
BstF5I	GGATG	8 cut(s)	10, 496, 1522, 1609, 1640, 1954, 2176, 2561
BstHHI	GCGC	3 cut(s)	826, 1054, 2019
BstMAI	GTCTC	6 cut(s)	550, 954, 1097, 1167, 1383, 2822
BstMWI	GCNNNNNNNGC	4 cut(s)	627, 1075, 1418, 2343
BstNI	CCWGG	4 cut(s)	1574, 1672, 2601, 2651
BstNSI	RCATGY	4 cut(s)	474, 1319, 2023, 2817
BstPAI	GACNNNNGTC	1 cut(s)	473
BstSCI	CCNGG	5 cut(s)	226, 1572, 1670, 2599, 2649
BstSFI	CTRYAG	6 cut(s)	1792, 1905, 1916, 2067, 2488, 2845
BstV2I	GAAGAC	3 cut(s)	1315, 1929, 2118
BstX2I	RGATCY	3 cut(s)	79, 1184, 1685
BstYI	RGATCY	3 cut(s)	79, 1184, 1685
BstZ17I	GTATAC	1 cut(s)	2409
BsuI	GTATCC	1 cut(s)	885
BsuRI	GGCC	7 cut(s)	464, 689, 904, 1005, 1084, 1571, 2950
BtsCI	GGATG	8 cut(s)	10, 496, 1522, 1609, 1640, 1954, 2176, 2561
BtsI	GCAGTG	2 cut(s)	433, 2497
BtsIMutI	CAGTG	4 cut(s)	430, 433, 2497, 2865
Cac8I	GCNNGC	3 cut(s)	1423, 1799, 2021
CaiI	CAGNNNCTG	1 cut(s)	1828
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	3 cut(s)	826, 1054, 2019
Cfr13I	GGNCC	2 cut(s)	1004, 1570
CseI	GACGC	2 cut(s)	463, 1418
Csp6I	GTAC	8 cut(s)	106, 333, 1014, 1114, 2276, 2514, 2811, 2891
CviQI	GTAC	8 cut(s)	106, 333, 1014, 1114, 2276, 2514, 2811, 2891
Eam1104I	CTCTTC	5 cut(s)	678, 833, 1165, 2054, 2622
EarI	CTCTTC	5 cut(s)	678, 833, 1165, 2054, 2622
Eco130I	CCWWGG	2 cut(s)	184, 878
Eco147I	AGGCCT	1 cut(s)	2950
Eco31I	GGTCTC	3 cut(s)	954, 1097, 1383
Eco32I	GATATC	1 cut(s)	1713
Eco57I	CTGAAG	5 cut(s)	387, 1794, 1830, 2126, 2915
Eco88I	CYCGRG	2 cut(s)	1689, 2940
EcoRI	GAATTC	5 cut(s)	142, 313, 2168, 2645, 2902
EcoRII	CCWGG	4 cut(s)	1572, 1670, 2599, 2649
EcoRV	GATATC	1 cut(s)	1713
EcoT14I	CCWWGG	2 cut(s)	184, 878
EcoT22I	ATGCAT	1 cut(s)	1266
ErhI	CCWWGG	2 cut(s)	184, 878
FalI	AAGNNNNNCTT	2 cut(s)	1440, 1472
FaqI	GGGAC	2 cut(s)	942, 1148
FauI	CCCGC	1 cut(s)	2351
FauNDI	CATATG	1 cut(s)	2836
FbaI	TGATCA	4 cut(s)	700, 1332, 1465, 1534
FblI	GTMKAC	1 cut(s)	2408
FokI	GGATG	8 cut(s)	17, 503, 1529, 1616, 1627, 1961, 2163, 2548
FspBI	CTAG	7 cut(s)	242, 294, 714, 879, 969, 1625, 2697
FspI	TGCGCA	1 cut(s)	2018
GlaI	GCGC	3 cut(s)	825, 1053, 2018
GsuI	CTGGAG	1 cut(s)	1323
HaeIII	GGCC	7 cut(s)	464, 689, 904, 1005, 1084, 1571, 2950
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	2 cut(s)	463, 1418
HhaI	GCGC	3 cut(s)	826, 1054, 2019
Hin1I	GRCGYC	1 cut(s)	1344
Hin6I	GCGC	3 cut(s)	824, 1052, 2017
HinP1I	GCGC	3 cut(s)	824, 1052, 2017
HincII	GTYRAC	3 cut(s)	478, 727, 1480
HindII	GTYRAC	3 cut(s)	478, 727, 1480
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	7 cut(s)	130, 478, 727, 1480, 1508, 1547, 2409
Hpy8I	GTNNAC	7 cut(s)	130, 478, 727, 1480, 1508, 1547, 2409
HpyAV	CCTTC	4 cut(s)	1119, 2020, 2525, 2617
HpyCH4III	ACNGT	8 cut(s)	710, 1227, 1285, 1377, 1660, 1719, 2367, 2957
HpyCH4IV	ACGT	3 cut(s)	780, 1344, 2380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	627, 1075, 1418, 2343
HpySE526I	ACGT	3 cut(s)	780, 1344, 2380
Hsp92I	GRCGYC	1 cut(s)	1344
HspAI	GCGC	3 cut(s)	824, 1052, 2017
Ksp22I	TGATCA	4 cut(s)	700, 1332, 1465, 1534
LguI	GCTCTTC	1 cut(s)	833
LmnI	GCTCC	5 cut(s)	354, 761, 959, 1075, 2459
LweI	GCATC	6 cut(s)	557, 674, 682, 1251, 1507, 2789
MaeI	CTAG	7 cut(s)	242, 294, 714, 879, 969, 1625, 2697
MaeII	ACGT	3 cut(s)	780, 1344, 2380
MaeIII	GTNAC	4 cut(s)	1561, 2361, 2432, 2492
MbiI	CCGCTC	1 cut(s)	633
MflI	RGATCY	3 cut(s)	79, 1184, 1685
MlyI	GAGTC	6 cut(s)	349, 877, 892, 898, 1602, 1943
MmeI	TCCRAC	4 cut(s)	1668, 2025, 2145, 2900
Mph1103I	ATGCAT	1 cut(s)	1266
MroXI	GAANNNNTTC	3 cut(s)	179, 2389, 2830
MseI	TTAA	9 cut(s)	74, 915, 1194, 1230, 1404, 1446, 1871, 1997, 2429
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	4 cut(s)	509, 2337, 2850, 2874
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	5 cut(s)	228, 1574, 1672, 2601, 2651
Mva1269I	GAATGC	3 cut(s)	814, 1204, 2355
MvaI	CCWGG	4 cut(s)	1574, 1672, 2601, 2651
MwoI	GCNNNNNNNGC	4 cut(s)	627, 1075, 1418, 2343
NciI	CCSGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	2836
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	4 cut(s)	1561, 2361, 2432, 2492
NsbI	TGCGCA	1 cut(s)	2018
NsiI	ATGCAT	1 cut(s)	1266
NspI	RCATGY	4 cut(s)	474, 1319, 2023, 2817
NspV	TTCGAA	2 cut(s)	146, 2621
PaeI	GCATGC	1 cut(s)	2023
PagI	TCATGA	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	2950
PciI	ACATGT	2 cut(s)	1315, 2813
PciSI	GCTCTTC	1 cut(s)	833
PctI	GAATGC	3 cut(s)	814, 1204, 2355
PdmI	GAANNNNTTC	3 cut(s)	179, 2389, 2830
PleI	GAGTC	6 cut(s)	348, 876, 891, 897, 1601, 1942
PpsI	GAGTC	6 cut(s)	348, 876, 891, 897, 1601, 1942
PscI	ACATGT	2 cut(s)	1315, 2813
PshAI	GACNNNNGTC	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	2472
Psp6I	CCWGG	4 cut(s)	1572, 1670, 2599, 2649
PspGI	CCWGG	4 cut(s)	1572, 1670, 2599, 2649
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	1004, 1570
PstI	CTGCAG	4 cut(s)	1909, 1920, 2492, 2849
PstNI	CAGNNNCTG	1 cut(s)	1828
PsuI	RGATCY	3 cut(s)	79, 1184, 1685
PvuII	CAGCTG	3 cut(s)	509, 2337, 2874
RsaI	GTAC	8 cut(s)	107, 334, 1015, 1115, 2277, 2515, 2812, 2892
RsaNI	GTAC	8 cut(s)	106, 333, 1014, 1114, 2276, 2514, 2811, 2891
RseI	CAYNNNNRTG	1 cut(s)	161
SapI	GCTCTTC	1 cut(s)	833
SaqAI	TTAA	9 cut(s)	74, 915, 1194, 1230, 1404, 1446, 1871, 1997, 2429
Sau96I	GGNCC	2 cut(s)	1004, 1570
ScaI	AGTACT	2 cut(s)	107, 2515
SchI	GAGTC	6 cut(s)	349, 877, 892, 898, 1602, 1943
ScrFI	CCNGG	5 cut(s)	228, 1574, 1672, 2601, 2651
SfaNI	GCATC	6 cut(s)	557, 674, 682, 1251, 1507, 2789
SfcI	CTRYAG	6 cut(s)	1792, 1905, 1916, 2067, 2488, 2845
SfuI	TTCGAA	2 cut(s)	146, 2621
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	2093
SmoI	CTYRAG	1 cut(s)	2093
SphI	GCATGC	1 cut(s)	2023
SseBI	AGGCCT	1 cut(s)	2950
SsiI	CCGC	7 cut(s)	438, 631, 1032, 1814, 1958, 2344, 2850
SspI	AATATT	1 cut(s)	1848
SspMI	CTAG	7 cut(s)	242, 294, 714, 879, 969, 1625, 2697
StuI	AGGCCT	1 cut(s)	2950
StyD4I	CCNGG	5 cut(s)	226, 1572, 1670, 2599, 2649
StyI	CCWWGG	2 cut(s)	184, 878
TaaI	ACNGT	8 cut(s)	710, 1227, 1285, 1377, 1660, 1719, 2367, 2957
TaiI	ACGT	3 cut(s)	783, 1347, 2383
TaqI	TCGA	6 cut(s)	38, 146, 751, 1168, 1499, 2621
TatI	WGTACW	5 cut(s)	105, 332, 1113, 2513, 2890
TauI	GCSGC	3 cut(s)	441, 633, 1034
Tru1I	TTAA	9 cut(s)	74, 915, 1194, 1230, 1404, 1446, 1871, 1997, 2429
Tru9I	TTAA	9 cut(s)	74, 915, 1194, 1230, 1404, 1446, 1871, 1997, 2429
TscAI	CASTG	4 cut(s)	430, 440, 2497, 2872
TseFI	GTSAC	4 cut(s)	1561, 2361, 2432, 2492
Tsp45I	GTSAC	4 cut(s)	1561, 2361, 2432, 2492
TspGWI	ACGGA	2 cut(s)	861, 2714
TspRI	CASTG	4 cut(s)	430, 440, 2497, 2872
XbaI	TCTAGA	1 cut(s)	968
XceI	RCATGY	4 cut(s)	474, 1319, 2023, 2817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1262
XmaJI	CCTAGG	1 cut(s)	878
XmiI	GTMKAC	1 cut(s)	2408
XmnI	GAANNNNTTC	3 cut(s)	179, 2389, 2830
XspI	CTAG	7 cut(s)	242, 294, 714, 879, 969, 1625, 2697
ZraI	GACGTC	1 cut(s)	1345
ZrmI	AGTACT	2 cut(s)	107, 2515
Zsp2I	ATGCAT	1 cut(s)	1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.