Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Forward (+)

57489970 .. 57492823

Gene Structure 2854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGATGGATGGGCGGCGTCATTCTGTTGATATACCTATCTCTAAAGCTCTGGTGGCTCTGCGGAGGGTGAGGTCTCTAAGGGATCCATCAACTAATTCTATGAGCAAATTCTCTTCTCCGGTTGAGAATGTTAACTGGGAAACGAATTCGGGTAATGATATCTCTATGCTATTCTTGAATACTTTCCAAGAAGGTGGTTCTGACAACCGTAGTTGTTTGAGGCCAAAGAATTCGGATTTGTATGGACAAAGAGAGGATTGCTTAGATGATTTTGAACTAAACTTGGGTTTAGAAAAGTCCAGATTGATCCTGCCTGAGAATTCAGAGTGGGTTGGAAGCACAGGGAGTCCTAGGAGCAATCAGGGTGATGAGTTTGATCTTTCAGGGTCAGATAAGGAAGAGGTTTTTAGAAATAAATCACTGAGTCAGAGATATAAGAGCAGTCATATGGATAAAGGATTGGCCATGACATGCGTCAAGCCTTTGGAGGATGTGGATTATGAAGAAACTGTCAGATCATCATGTTTCGAAAGAGTAGATCAGATTGCATCAAAACGAAAATCACAGTGTAAAAATCGTGTTGATTTGTCTGGGGCAATTGGTGATCGTAGGAGTCGAACTGGCAGTCCATGCCCTTCAGCAGGTGATGCTCTTTCAAGCCATGTTACACCTTTTTTTGCAAACGAAGAGGTTGGTATTGGAGATCATGATCATCCTGGTGGTGGAATAAGCTGCTGCTGGTCAAGAACCCCTAGATTCAGAGAAGCTAACATTTCTTTTGATGCTGATGACCATCCTCTGTTATACAAGAATGTAGATCATATTTCACTTTCTGACCACAGAAGCTTGAAACGCATAGGAAATGAAACCAATTCACAGTTAGAAAAGCCCAGGAGTCTGAGTCAGAAATTCAGGCCAGAGTCTTTCATCGACTTGGTGGGACAAAATGTTGTTGCAAGGTCTCTTTTGGGTGCTATCTCTAGAGGAAGAATAACCTCATTCTATCTTTTCCATGGTCCACAAGGTACAGGAAAGACATCAGCCTCAAGAATTTTTTGCTGCAGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

356

Amino Acids

39.64

Weight (kDa)

7.1

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	632
Acc36I	ACCTGC	1 cut(s)	632
AciI	CCGC	2 cut(s)	13, 61
AclWI	GGATC	3 cut(s)	77, 90, 301
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	6 cut(s)	107, 145, 229, 319, 908, 1050
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	1 cut(s)	16
AfaI	GTAC	1 cut(s)	1027
AfiI	CCNNNNNNNGG	2 cut(s)	641, 722
AgsI	TTSAA	4 cut(s)	178, 275, 657, 850
AjnI	CCWGG	2 cut(s)	715, 890
AloI	GAACNNNNNNTCC	2 cut(s)	610, 642
AluBI	AGCT	4 cut(s)	47, 732, 767, 846
AluI	AGCT	4 cut(s)	47, 732, 767, 846
Alw26I	GTCTC	2 cut(s)	78, 966
AlwI	GGATC	3 cut(s)	77, 90, 301
AoxI	GGCC	3 cut(s)	221, 462, 914
ApeKI	GCWGC	4 cut(s)	732, 735, 1059, 1062
ApoI	RAATTY	6 cut(s)	107, 145, 229, 319, 908, 1050
ArsI	GACNNNNNNTTYG	2 cut(s)	610, 642
Asp700I	GAANNNNTTC	1 cut(s)	182
AspA2I	CCTAGG	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	1016
AsuHPI	GGTGA	4 cut(s)	79, 377, 614, 656
AsuII	TTCGAA	1 cut(s)	528
AvaII	GGWCC	1 cut(s)	1016
AvrII	CCTAGG	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	464
BamHI	GGATCC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	719, 722, 1046
BccI	CCATC	3 cut(s)	2, 94, 801
BciT130I	CCWGG	2 cut(s)	717, 892
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	2 cut(s)	78, 966
BfaI	CTAG	3 cut(s)	351, 753, 981
BfmI	CTRYAG	1 cut(s)	1060
BfuAI	ACCTGC	1 cut(s)	632
BisI	GCNGC	5 cut(s)	14, 733, 736, 1060, 1063
BlnI	CCTAGG	1 cut(s)	350
BlsI	GCNGC	5 cut(s)	15, 734, 737, 1061, 1064
Bme1390I	CCNGG	2 cut(s)	717, 892
Bme18I	GGWCC	1 cut(s)	1016
BmgT120I	GGNCC	1 cut(s)	1016
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	717, 892
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	3 cut(s)	557, 637, 772
BmuI	ACTGGG	1 cut(s)	145
BoxI	GACNNNNGTC	1 cut(s)	473
Bpu14I	TTCGAA	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	1030
BsaBI	GATNNNNATC	2 cut(s)	708, 792
BsaHI	GRCGYC	1 cut(s)	16
BsaI	GGTCTC	2 cut(s)	78, 966
BsaJI	CCNNGG	3 cut(s)	350, 890, 1012
BsaWI	WCCGGW	1 cut(s)	118
BsaXI	ACNNNNNCTCC	2 cut(s)	886, 916
Bsc4I	CCNNNNNNNGG	2 cut(s)	641, 722
Bse1I	ACTGG	2 cut(s)	140, 625
Bse8I	GATNNNNATC	2 cut(s)	708, 792
BseBI	CCWGG	2 cut(s)	717, 892
BseDI	CCNNGG	3 cut(s)	350, 890, 1012
BseGI	GGATG	4 cut(s)	13, 496, 712, 793
BseJI	GATNNNNATC	2 cut(s)	708, 792
BseLI	CCNNNNNNNGG	2 cut(s)	641, 722
BseMII	CTCAG	3 cut(s)	306, 413, 890
BseNI	ACTGG	2 cut(s)	140, 625
BseXI	GCAGC	3 cut(s)	719, 722, 1046
BshFI	GGCC	3 cut(s)	223, 464, 916
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	954
BslI	CCNNNNNNNGG	2 cut(s)	641, 722
BsmAI	GTCTC	2 cut(s)	78, 966
BsmFI	GGGAC	1 cut(s)	954
BsnI	GGCC	3 cut(s)	223, 464, 916
Bso31I	GGTCTC	2 cut(s)	78, 966
Bsp119I	TTCGAA	1 cut(s)	528
Bsp143I	GATC	9 cut(s)	82, 306, 376, 515, 538, 604, 703, 709, 817
Bsp19I	CCATGG	1 cut(s)	1012
BspACI	CCGC	2 cut(s)	13, 61
BspANI	GGCC	3 cut(s)	223, 464, 916
BspCNI	CTCAG	3 cut(s)	307, 414, 891
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	1064
BspMI	ACCTGC	1 cut(s)	632
BspPI	GGATC	3 cut(s)	77, 90, 301
BspT104I	TTCGAA	1 cut(s)	528
BspTNI	GGTCTC	2 cut(s)	78, 966
BsrI	ACTGG	2 cut(s)	140, 625
BssECI	CCNNGG	3 cut(s)	350, 890, 1012
BssMI	GATC	9 cut(s)	82, 306, 376, 515, 538, 604, 703, 709, 817
BssNI	GRCGYC	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	350, 1012
Bst2UI	CCWGG	2 cut(s)	717, 892
Bst4CI	ACNGT	4 cut(s)	209, 511, 567, 879
Bst6I	CTCTTC	3 cut(s)	118, 393, 681
BstACI	GRCGYC	1 cut(s)	16
BstAPI	GCANNNNNTGC	2 cut(s)	630, 647
BstBI	TTCGAA	1 cut(s)	528
BstDEI	CTNAG	5 cut(s)	77, 262, 315, 422, 899
BstDSI	CCRYGG	1 cut(s)	1012
BstENI	CCTNNNNNAGG	1 cut(s)	639
BstF5I	GGATG	4 cut(s)	13, 496, 712, 793
BstKTI	GATC	9 cut(s)	85, 309, 379, 518, 541, 607, 706, 712, 820
BstMAI	GTCTC	2 cut(s)	78, 966
BstMBI	GATC	9 cut(s)	82, 306, 376, 515, 538, 604, 703, 709, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 630, 647, 852
BstNI	CCWGG	2 cut(s)	717, 892
BstNSI	RCATGY	1 cut(s)	474
BstPAI	GACNNNNGTC	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	715, 890
BstSFI	CTRYAG	1 cut(s)	1060
BstV1I	GCAGC	3 cut(s)	719, 722, 1046
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	3 cut(s)	223, 464, 916
BtgI	CCRYGG	1 cut(s)	1012
BtsCI	GGATG	4 cut(s)	13, 496, 712, 793
BtsIMutI	CAGTG	2 cut(s)	419, 572
BveI	ACCTGC	1 cut(s)	632
CciI	TCATGA	1 cut(s)	706
Cfr13I	GGNCC	1 cut(s)	1016
CseI	GACGC	2 cut(s)	5, 463
Csp6I	GTAC	1 cut(s)	1026
CviAII	CATG	7 cut(s)	466, 471, 522, 630, 662, 707, 1013
CviQI	GTAC	1 cut(s)	1026
DdeI	CTNAG	5 cut(s)	77, 262, 315, 422, 899
DpnI	GATC	9 cut(s)	84, 308, 378, 517, 540, 606, 705, 711, 819
DpnII	GATC	9 cut(s)	82, 306, 376, 515, 538, 604, 703, 709, 817
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	3 cut(s)	118, 393, 681
EarI	CTCTTC	3 cut(s)	118, 393, 681
Eco130I	CCWWGG	2 cut(s)	350, 1012
Eco31I	GGTCTC	2 cut(s)	78, 966
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	1016
Eco57I	CTGAAG	1 cut(s)	621
EcoNI	CCTNNNNNAGG	1 cut(s)	639
EcoRI	GAATTC	3 cut(s)	145, 229, 319
EcoRII	CCWGG	2 cut(s)	715, 890
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	350, 1012
ErhI	CCWWGG	2 cut(s)	350, 1012
FaeI	CATG	7 cut(s)	469, 474, 525, 633, 665, 710, 1016
FaqI	GGGAC	1 cut(s)	954
FatI	CATG	7 cut(s)	465, 470, 521, 629, 661, 706, 1012
FauNDI	CATATG	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	5 cut(s)	14, 733, 736, 1060, 1063
FokI	GGATG	4 cut(s)	20, 503, 699, 780
Fsp4HI	GCNGC	5 cut(s)	14, 733, 736, 1060, 1063
FspBI	CTAG	3 cut(s)	351, 753, 981
GluI	GCNGC	5 cut(s)	14, 733, 736, 1060, 1063
HaeIII	GGCC	3 cut(s)	223, 464, 916
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	2 cut(s)	5, 463
Hin1I	GRCGYC	1 cut(s)	16
Hin1II	CATG	7 cut(s)	469, 474, 525, 633, 665, 710, 1016
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	844
HinfI	GANTC	7 cut(s)	346, 424, 613, 756, 895, 901, 920
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	4 cut(s)	79, 377, 614, 656
Hpy166II	GTNNAC	2 cut(s)	133, 1019
Hpy188III	TCNNGA	6 cut(s)	175, 300, 707, 744, 981, 1047
Hpy8I	GTNNAC	2 cut(s)	133, 1019
HpyAV	CCTTC	2 cut(s)	185, 645
HpyCH4III	ACNGT	4 cut(s)	209, 511, 567, 879
HpyCH4V	TGCA	4 cut(s)	548, 680, 956, 1062
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 630, 647, 852
HpyF3I	CTNAG	5 cut(s)	77, 262, 315, 422, 899
Hsp92I	GRCGYC	1 cut(s)	16
Hsp92II	CATG	7 cut(s)	469, 474, 525, 633, 665, 710, 1016
Ksp22I	TGATCA	1 cut(s)	709
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	9 cut(s)	82, 306, 376, 515, 538, 604, 703, 709, 817
LmnI	GCTCC	1 cut(s)	354
Lsp1109I	GCAGC	3 cut(s)	719, 722, 1046
LweI	GCATC	3 cut(s)	557, 637, 772
MaeI	CTAG	3 cut(s)	351, 753, 981
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	9 cut(s)	84, 308, 378, 517, 540, 606, 705, 711, 819
MboI	GATC	9 cut(s)	82, 306, 376, 515, 538, 604, 703, 709, 817
MboII	GAAGA	5 cut(s)	105, 410, 515, 698, 999
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	9 cut(s)	94, 107, 145, 229, 319, 597, 871, 908, 1050
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	6 cut(s)	355, 433, 622, 904, 910, 929
MmeI	TCCRAC	1 cut(s)	313
Mox20I	TGGCCA	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	2 cut(s)	132, 1069
MslI	CAYNNNNRTG	1 cut(s)	717
Msp20I	TGGCCA	1 cut(s)	464
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	717, 892
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	717, 892
MwoI	GCNNNNNNNGC	4 cut(s)	53, 630, 647, 852
NcoI	CCATGG	1 cut(s)	1012
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	9 cut(s)	82, 306, 376, 515, 538, 604, 703, 709, 817
NlaIII	CATG	7 cut(s)	469, 474, 525, 633, 665, 710, 1016
NlaIV	GGNNCC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	474
NspV	TTCGAA	1 cut(s)	528
PagI	TCATGA	1 cut(s)	706
PaqCI	CACCTGC	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	756
PkrI	GCNGC	5 cut(s)	15, 734, 737, 1061, 1064
PleI	GAGTC	6 cut(s)	354, 432, 621, 903, 909, 928
PpsI	GAGTC	6 cut(s)	354, 432, 621, 903, 909, 928
PshAI	GACNNNNGTC	1 cut(s)	473
Psp6I	CCWGG	2 cut(s)	715, 890
PspGI	CCWGG	2 cut(s)	715, 890
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	1016
PstI	CTGCAG	1 cut(s)	1064
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	1027
RsaNI	GTAC	1 cut(s)	1026
RseI	CAYNNNNRTG	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	132, 1069
SatI	GCNGC	5 cut(s)	14, 733, 736, 1060, 1063
Sau3AI	GATC	9 cut(s)	82, 306, 376, 515, 538, 604, 703, 709, 817
Sau96I	GGNCC	1 cut(s)	1016
SchI	GAGTC	6 cut(s)	355, 433, 622, 904, 910, 929
ScrFI	CCNGG	2 cut(s)	717, 892
SfaNI	GCATC	3 cut(s)	557, 637, 772
SfcI	CTRYAG	1 cut(s)	1060
SfuI	TTCGAA	1 cut(s)	528
SinI	GGWCC	1 cut(s)	1016
SmiMI	CAYNNNNRTG	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	1045
SmoI	CTYRAG	1 cut(s)	1045
Sse9I	AATT	9 cut(s)	94, 107, 145, 229, 319, 597, 871, 908, 1050
SsiI	CCGC	2 cut(s)	13, 61
SspMI	CTAG	3 cut(s)	351, 753, 981
StyD4I	CCNGG	2 cut(s)	715, 890
StyI	CCWWGG	2 cut(s)	350, 1012
TaaI	ACNGT	4 cut(s)	209, 511, 567, 879
TaqI	TCGA	3 cut(s)	528, 616, 930
TasI	AATT	9 cut(s)	94, 107, 145, 229, 319, 597, 871, 908, 1050
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	756
Tru1I	TTAA	2 cut(s)	132, 1069
Tru9I	TTAA	2 cut(s)	132, 1069
TscAI	CASTG	2 cut(s)	426, 572
TseI	GCWGC	4 cut(s)	732, 735, 1059, 1062
TspDTI	ATGAA	3 cut(s)	516, 879, 916
TspRI	CASTG	2 cut(s)	426, 572
VpaK11BI	GGWCC	1 cut(s)	1016
XagI	CCTNNNNNAGG	1 cut(s)	639
XapI	RAATTY	6 cut(s)	107, 145, 229, 319, 908, 1050
XbaI	TCTAGA	1 cut(s)	980
XceI	RCATGY	1 cut(s)	474
XmaJI	CCTAGG	1 cut(s)	350
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	3 cut(s)	351, 753, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.