Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

44130990 .. 44131286

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG398100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCATGTTGTTGCGAGGTCTCTTTTGGGCTCTAGAGGAAGAATAACCTCATTCTATCTTTTCCATGGTCCACAAGGTACAGGAAAGACATCAGTCTCAAGAATTTTTGCTGCAGCACTTAATTGTCTTTCACTGGAGGAGTACAGGCCGTGTGGTCTCTGCTGCGAGTGTAATGTGTACTTTTCTGGAAACAGCAGAGATATCAAGGAAATAGATTCTGTGAGAATCAACCGGAGAGACCGGTTTAGGTTGTCTTATTATGAATGCAGCTACACCTCCCGTTTCTTCACGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

98

Amino Acids

11.25

Weight (kDa)

9.24

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	12 - 73	1.4e-09	DNA polymerase III, delta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	3 cut(s)	79, 143, 179
AgeI	ACCGGT	1 cut(s)	240
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
Alw26I	GTCTC	4 cut(s)	24, 100, 161, 231
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	4 cut(s)	110, 113, 162, 267
ApoI	RAATTY	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	97, 125, 149, 279
BceAI	ACGGC	1 cut(s)	133
BcoDI	GTCTC	4 cut(s)	24, 100, 161, 231
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	4 cut(s)	111, 114, 163, 268
BlsI	GCNGC	4 cut(s)	112, 115, 164, 269
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BoxI	GACNNNNGTC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	82
BsaI	GGTCTC	3 cut(s)	24, 161, 231
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	2 cut(s)	231, 240
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	4 cut(s)	97, 125, 149, 279
BshFI	GGCC	1 cut(s)	148
BshTI	ACCGGT	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	232, 241
BsmAI	GTCTC	4 cut(s)	24, 100, 161, 231
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	148
Bso31I	GGTCTC	3 cut(s)	24, 161, 231
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp19I	CCATGG	1 cut(s)	64
BspANI	GGCC	1 cut(s)	148
BspMAI	CTGCAG	1 cut(s)	115
BspTNI	GGTCTC	3 cut(s)	24, 161, 231
BsrFI	RCCGGY	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	292
BstDSI	CCRYGG	1 cut(s)	64
BstMAI	GTCTC	4 cut(s)	24, 100, 161, 231
BstNSI	RCATGY	1 cut(s)	8
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	97, 125, 149, 279
BsuRI	GGCC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	3 cut(s)	78, 142, 178
CspAI	ACCGGT	1 cut(s)	240
CviAII	CATG	2 cut(s)	5, 65
CviJI	RGCY	3 cut(s)	30, 148, 270
CviKI_1	RGCY	3 cut(s)	30, 148, 270
CviQI	GTAC	3 cut(s)	78, 142, 178
Eco130I	CCWWGG	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	3 cut(s)	24, 161, 231
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	2 cut(s)	8, 68
FaiI	YATR	3 cut(s)	6, 66, 261
FatI	CATG	2 cut(s)	4, 64
Fnu4HI	GCNGC	4 cut(s)	111, 114, 163, 268
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	4 cut(s)	111, 114, 163, 268
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	4 cut(s)	111, 114, 163, 268
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	2 cut(s)	232, 241
Hin1II	CATG	2 cut(s)	8, 68
HinfI	GANTC	2 cut(s)	215, 225
HpaII	CCGG	2 cut(s)	232, 241
Hpy166II	GTNNAC	2 cut(s)	71, 178
Hpy188III	TCNNGA	3 cut(s)	33, 99, 186
Hpy8I	GTNNAC	2 cut(s)	71, 178
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	4, 113, 267
Hsp92II	CATG	2 cut(s)	8, 68
LpnPI	CCDG	6 cut(s)	66, 119, 130, 171, 245, 254
Lsp1109I	GCAGC	4 cut(s)	97, 125, 149, 279
MaeI	CTAG	1 cut(s)	33
MboII	GAAGA	2 cut(s)	51, 277
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	2 cut(s)	102, 121
MnlI	CCTC	5 cut(s)	9, 29, 58, 130, 286
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	120, 295
MspI	CCGG	2 cut(s)	232, 241
Mva1269I	GAATGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	64
NlaIII	CATG	2 cut(s)	8, 68
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	215, 225
PinAI	ACCGGT	1 cut(s)	240
PkrI	GCNGC	4 cut(s)	112, 115, 164, 269
PshAI	GACNNNNGTC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	115
RsaI	GTAC	3 cut(s)	79, 143, 179
RsaNI	GTAC	3 cut(s)	78, 142, 178
SaqAI	TTAA	2 cut(s)	120, 295
SatI	GCNGC	4 cut(s)	111, 114, 163, 268
Sau96I	GGNCC	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	6 cut(s)	20, 50, 79, 251, 272, 278
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	102, 121
SspMI	CTAG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	292
TasI	AATT	2 cut(s)	102, 121
TatI	WGTACW	2 cut(s)	141, 177
TfiI	GAWTC	2 cut(s)	215, 225
Tru1I	TTAA	2 cut(s)	120, 295
Tru9I	TTAA	2 cut(s)	120, 295
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	4 cut(s)	110, 113, 162, 267
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	102
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.