Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

44127896 .. 44128849

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG397900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGTGGTTGTAAGCACATTGAGAAATAGTGAAGTTAACGTACTGAGCACAAGAGCGGCCTCATCCCGCAGATCGTTTGAAGACGATACACCAAAGGCACCTGGATTAATGTTTGATTCTTCAAAGGAAGAGGGAAGCAACCAGGACTGCCAGGTGACTTGTTGCACCAAACTACAAAACAAGTTTGCAATCCCAACTAGGACATCTTTTGACGCCTGTCTTTTGGGAAGCGATTCATATGCTTTCTGCAGCGGCTCTGACAATGGGAACAACGCCGGCAACTATAAGGAAGAGTTGAAGGAAAATTCAGGTGTGCTTTGTTGGAAAACCCTGCTTTCCTCAAGAAAGGATTGGCAGCTGAGGCAACAACAGCAAAATTCGAAACTAGTTGGGTGGGTTCTTCCATGTGCAACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

139

Amino Acids

15.3

Weight (kDa)

7.5

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	3 cut(s)	56, 67, 252
AcsI	RAATTY	2 cut(s)	304, 376
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	42
AgsI	TTSAA	3 cut(s)	80, 123, 298
AhlI	ACTAGT	1 cut(s)	385
AjnI	CCWGG	3 cut(s)	100, 141, 150
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw21I	GWGCWC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	249, 355
ApoI	RAATTY	2 cut(s)	304, 376
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	261, 367
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	3 cut(s)	102, 143, 152
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	2 cut(s)	198, 386
BfmI	CTRYAG	1 cut(s)	247
BisI	GCNGC	4 cut(s)	57, 250, 253, 356
BlsI	GCNGC	4 cut(s)	58, 251, 254, 357
Bme1390I	CCNGG	3 cut(s)	102, 143, 152
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	3 cut(s)	102, 143, 152
BoxI	GACNNNNGTC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	213
Bse118I	RCCGGY	1 cut(s)	275
BseBI	CCWGG	3 cut(s)	102, 143, 152
BseGI	GGATG	1 cut(s)	62
BseMII	CTCAG	2 cut(s)	35, 350
BseXI	GCAGC	2 cut(s)	261, 367
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	276
BsnI	GGCC	1 cut(s)	59
Bsp119I	TTCGAA	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	3 cut(s)	56, 67, 252
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	36, 351
BspLI	GGNNCC	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	380
BspT107I	GGYRCC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	275
BssMI	GATC	1 cut(s)	71
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	3 cut(s)	102, 143, 152
Bst6I	CTCTTC	2 cut(s)	123, 285
BstACI	GRCGYC	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	44, 359, 417
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 370
BstNI	CCWGG	3 cut(s)	102, 143, 152
BstPAI	GACNNNNGTC	1 cut(s)	216
BstSCI	CCNGG	3 cut(s)	100, 141, 150
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	261, 367
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	275
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	3 cut(s)	59, 255, 358
CviKI_1	RGCY	3 cut(s)	59, 255, 358
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	3 cut(s)	44, 359, 417
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	123, 285
EarI	CTCTTC	2 cut(s)	123, 285
EcoRII	CCWGG	3 cut(s)	100, 141, 150
FaeI	CATG	1 cut(s)	408
FaiI	YATR	4 cut(s)	238, 240, 285, 406
FatI	CATG	1 cut(s)	404
FauI	CCCGC	1 cut(s)	74
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	4 cut(s)	57, 250, 253, 356
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	4 cut(s)	57, 250, 253, 356
FspBI	CTAG	2 cut(s)	198, 386
GluI	GCNGC	4 cut(s)	57, 250, 253, 356
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	408
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	116, 233
HpaI	GTTAAC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	342
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	4 cut(s)	165, 188, 249, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 370
HpyF3I	CTNAG	3 cut(s)	44, 359, 417
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	408
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	71
Lsp1109I	GCAGC	2 cut(s)	261, 367
MaeI	CTAG	2 cut(s)	198, 386
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	73
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	1 cut(s)	71
MboII	GAAGA	5 cut(s)	92, 111, 140, 302, 392
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	2 cut(s)	304, 376
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	70, 124, 349, 354
MroNI	GCCGGC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	232
MseI	TTAA	2 cut(s)	36, 107
MspA1I	CMGCKG	2 cut(s)	252, 358
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	3 cut(s)	102, 143, 152
MvaI	CCWGG	3 cut(s)	102, 143, 152
MwoI	GCNNNNNNNGC	2 cut(s)	361, 370
NaeI	GCCGGC	1 cut(s)	277
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	1 cut(s)	71
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	380
PdiI	GCCGGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	116, 233
PkrI	GCNGC	4 cut(s)	58, 251, 254, 357
PshAI	GACNNNNGTC	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	3 cut(s)	100, 141, 150
PspGI	CCWGG	3 cut(s)	100, 141, 150
PspN4I	GGNNCC	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	36, 107
SatI	GCNGC	4 cut(s)	57, 250, 253, 356
Sau3AI	GATC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	102, 143, 152
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	5 cut(s)	42, 103, 156, 313, 360
SfcI	CTRYAG	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
SpeI	ACTAGT	1 cut(s)	385
Sse9I	AATT	2 cut(s)	304, 376
SsiI	CCGC	3 cut(s)	56, 67, 252
SspMI	CTAG	2 cut(s)	198, 386
StyD4I	CCNGG	3 cut(s)	100, 141, 150
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	304, 376
TauI	GCSGC	2 cut(s)	59, 255
TfiI	GAWTC	2 cut(s)	116, 233
Tru1I	TTAA	2 cut(s)	36, 107
Tru9I	TTAA	2 cut(s)	36, 107
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	249, 355
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	225
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	2 cut(s)	304, 376
XmnI	GAANNNNTTC	1 cut(s)	232
XspI	CTAG	2 cut(s)	198, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.