DNA polymerase III
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DNA_pol3_delta2 | PF13177 | 311 - 468 | 1.1e-21 | DNA polymerase III, delta subunit |
| AAA | PF00004 | 331 - 462 | 3.8e-09 | ATPase family associated with various cellular activities (AAA) |
| DNAX_ATPase_lid | PF22608 | 473 - 513 | 9.9e-07 | DNA polymerase III clamp loader subunit, ATPase lid domain |
| DnaA_N-like_STI | PF23007 | 685 - 768 | 3.7e-31 | STICHEL, DnaA_N-like alpha-beta domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1664 |
| AarI | CACCTGC | 1 cut(s) | 620 |
| Acc36I | ACCTGC | 1 cut(s) | 620 |
| AccB1I | GGYRCC | 2 cut(s) | 2623, 2985 |
| AccBSI | CCGCTC | 1 cut(s) | 2582 |
| AccII | CGCG | 3 cut(s) | 1179, 1360, 2409 |
| AclWI | GGATC | 5 cut(s) | 77, 90, 301, 1691, 2303 |
| AcoI | YGGCCR | 1 cut(s) | 450 |
| AcuI | CTGAAG | 2 cut(s) | 609, 1788 |
| AcyI | GRCGYC | 1 cut(s) | 16 |
| AfaI | GTAC | 6 cut(s) | 655, 1015, 1115, 2307, 2435, 2542 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 629, 710 |
| AflIII | ACRYGT | 1 cut(s) | 1315 |
| AhlI | ACTAGT | 1 cut(s) | 3007 |
| AjnI | CCWGG | 8 cut(s) | 703, 878, 1572, 1670, 2114, 2626, 2667, 2676 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 598, 630 |
| Alw21I | GWGCWC | 2 cut(s) | 2260, 2576 |
| Alw26I | GTCTC | 7 cut(s) | 78, 954, 1097, 1167, 1191, 2163, 2183 |
| Alw44I | GTGCAC | 1 cut(s) | 2256 |
| AlwI | GGATC | 5 cut(s) | 77, 90, 301, 1691, 2303 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1822 |
| Ama87I | CYCGRG | 1 cut(s) | 2722 |
| AoxI | GGCC | 6 cut(s) | 221, 450, 902, 1082, 1570, 1668 |
| ApaLI | GTGCAC | 1 cut(s) | 2256 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 598, 630 |
| AseI | ATTAAT | 1 cut(s) | 2633 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 182, 1781, 1841, 2416, 2851 |
| AspLEI | GCGC | 1 cut(s) | 2409 |
| AspS9I | GGNCC | 4 cut(s) | 1004, 1377, 1570, 1668 |
| AsuHPI | GGTGA | 8 cut(s) | 79, 365, 602, 644, 1424, 1763, 2382, 2785 |
| AsuII | TTCGAA | 1 cut(s) | 3002 |
| AvaI | CYCGRG | 1 cut(s) | 2722 |
| AvaII | GGWCC | 2 cut(s) | 1004, 1377 |
| AxyI | CCTNAGG | 1 cut(s) | 2962 |
| BaeGI | GKGCMC | 1 cut(s) | 2260 |
| BalI | TGGCCA | 1 cut(s) | 452 |
| BamHI | GGATCC | 1 cut(s) | 82 |
| BanI | GGYRCC | 2 cut(s) | 2623, 2985 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2550, 2582 |
| Bbv12I | GWGCWC | 2 cut(s) | 2260, 2576 |
| BbvCI | CCTCAGC | 1 cut(s) | 2981 |
| BccI | CCATC | 6 cut(s) | 2, 94, 789, 1403, 2353, 2401 |
| BceAI | ACGGC | 2 cut(s) | 482, 1069 |
| BciT130I | CCWGG | 8 cut(s) | 705, 880, 1574, 1672, 2116, 2628, 2669, 2678 |
| BciVI | GTATCC | 2 cut(s) | 1882, 2230 |
| BclI | TGATCA | 4 cut(s) | 697, 1332, 1465, 1534 |
| BcoDI | GTCTC | 7 cut(s) | 78, 954, 1097, 1167, 1191, 2163, 2183 |
| BcuI | ACTAGT | 1 cut(s) | 3007 |
| BfaI | CTAG | 5 cut(s) | 741, 969, 1625, 1950, 3008 |
| BfmI | CTRYAG | 6 cut(s) | 1047, 1899, 1923, 2097, 2184, 2866 |
| BfuAI | ACCTGC | 1 cut(s) | 620 |
| BfuI | GTATCC | 2 cut(s) | 1882, 2230 |
| BglII | AGATCT | 1 cut(s) | 1627 |
| BlpI | GCTNAGC | 1 cut(s) | 1916 |
| Bme1390I | CCNGG | 8 cut(s) | 705, 880, 1574, 1672, 2116, 2628, 2669, 2678 |
| Bme18I | GGWCC | 2 cut(s) | 1004, 1377 |
| BmeT110I | CYCGRG | 1 cut(s) | 2722 |
| BmgT120I | GGNCC | 4 cut(s) | 1004, 1377, 1570, 1668 |
| BmiI | GGNNCC | 4 cut(s) | 84, 1379, 2625, 2987 |
| BmrFI | CCNGG | 8 cut(s) | 705, 880, 1574, 1672, 2116, 2628, 2669, 2678 |
| BmrI | ACTGGG | 1 cut(s) | 859 |
| BmuI | ACTGGG | 1 cut(s) | 859 |
| BoxI | GACNNNNGTC | 1 cut(s) | 461 |
| BpmI | CTGGAG | 2 cut(s) | 1091, 1197 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2981 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1916 |
| Bpu14I | TTCGAA | 1 cut(s) | 3002 |
| BpuEI | CTTGAG | 1 cut(s) | 1018 |
| Bsa29I | ATCGAT | 1 cut(s) | 1299 |
| BsaAI | YACGTR | 1 cut(s) | 2309 |
| BsaBI | GATNNNNATC | 3 cut(s) | 696, 780, 2294 |
| BsaHI | GRCGYC | 1 cut(s) | 16 |
| BsaI | GGTCTC | 6 cut(s) | 78, 954, 1097, 1167, 1191, 2183 |
| BsaJI | CCNNGG | 7 cut(s) | 649, 878, 1000, 1358, 1671, 2223, 2711 |
| BsaWI | WCCGGW | 2 cut(s) | 118, 1167 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 874, 904 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 629, 710 |
| Bse1I | ACTGG | 4 cut(s) | 613, 865, 1074, 1214 |
| Bse21I | CCTNAGG | 1 cut(s) | 2962 |
| Bse3DI | GCAATG | 3 cut(s) | 1485, 2029, 2247 |
| Bse8I | GATNNNNATC | 3 cut(s) | 696, 780, 2294 |
| BseBI | CCWGG | 8 cut(s) | 705, 880, 1574, 1672, 2116, 2628, 2669, 2678 |
| BseCI | ATCGAT | 1 cut(s) | 1299 |
| BseDI | CCNNGG | 7 cut(s) | 649, 878, 1000, 1358, 1671, 2223, 2711 |
| BseGI | GGATG | 9 cut(s) | 13, 484, 700, 781, 1414, 1522, 1740, 1951, 2588 |
| BseJI | GATNNNNATC | 3 cut(s) | 696, 780, 2294 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 629, 710 |
| BseMI | GCAATG | 3 cut(s) | 1485, 2029, 2247 |
| BseNI | ACTGG | 4 cut(s) | 613, 865, 1074, 1214 |
| BseRI | GAGGAG | 3 cut(s) | 1088, 1924, 1927 |
| BseSI | GKGCMC | 1 cut(s) | 2260 |
| Bsh1236I | CGCG | 3 cut(s) | 1179, 1360, 2409 |
| BshFI | GGCC | 6 cut(s) | 223, 452, 904, 1084, 1572, 1670 |
| BshNI | GGYRCC | 2 cut(s) | 2623, 2985 |
| BshVI | ATCGAT | 1 cut(s) | 1299 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2260, 2576 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2722 |
| BsiSI | CCGG | 2 cut(s) | 119, 1168 |
| BslFI | GGGAC | 2 cut(s) | 942, 1363 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 629, 710 |
| BsmAI | GTCTC | 7 cut(s) | 78, 954, 1097, 1167, 1191, 2163, 2183 |
| BsmBI | CGTCTC | 1 cut(s) | 2163 |
| BsmFI | GGGAC | 2 cut(s) | 942, 1363 |
| BsmI | GAATGC | 4 cut(s) | 1204, 1369, 2055, 2382 |
| BsnI | GGCC | 6 cut(s) | 223, 452, 904, 1084, 1572, 1670 |
| Bso31I | GGTCTC | 6 cut(s) | 78, 954, 1097, 1167, 1191, 2183 |
| BsoBI | CYCGRG | 1 cut(s) | 2722 |
| Bsp119I | TTCGAA | 1 cut(s) | 3002 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2260, 2576 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1916 |
| Bsp19I | CCATGG | 2 cut(s) | 649, 1000 |
| BspANI | GGCC | 6 cut(s) | 223, 452, 904, 1084, 1572, 1670 |
| BspDI | ATCGAT | 1 cut(s) | 1299 |
| BspFNI | CGCG | 3 cut(s) | 1179, 1360, 2409 |
| BspHI | TCATGA | 1 cut(s) | 694 |
| BspLI | GGNNCC | 4 cut(s) | 84, 1379, 2625, 2987 |
| BspMAI | CTGCAG | 4 cut(s) | 1051, 1903, 1927, 2870 |
| BspMI | ACCTGC | 1 cut(s) | 620 |
| BspPI | GGATC | 5 cut(s) | 77, 90, 301, 1691, 2303 |
| BspT104I | TTCGAA | 1 cut(s) | 3002 |
| BspT107I | GGYRCC | 2 cut(s) | 2623, 2985 |
| BspTNI | GGTCTC | 6 cut(s) | 78, 954, 1097, 1167, 1191, 2183 |
| BsrBI | CCGCTC | 1 cut(s) | 2582 |
| BsrDI | GCAATG | 3 cut(s) | 1485, 2029, 2247 |
| BsrI | ACTGG | 4 cut(s) | 613, 865, 1074, 1214 |
| BssECI | CCNNGG | 7 cut(s) | 649, 878, 1000, 1358, 1671, 2223, 2711 |
| BssNI | GRCGYC | 1 cut(s) | 16 |
| BssT1I | CCWWGG | 4 cut(s) | 649, 1000, 2223, 2711 |
| Bst2UI | CCWGG | 8 cut(s) | 705, 880, 1574, 1672, 2116, 2628, 2669, 2678 |
| Bst4CI | ACNGT | 6 cut(s) | 209, 555, 1227, 1377, 1660, 2073 |
| Bst6I | CTCTTC | 6 cut(s) | 118, 381, 669, 2084, 2649, 2904 |
| BstACI | GRCGYC | 1 cut(s) | 16 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 618, 635 |
| BstBAI | YACGTR | 1 cut(s) | 2309 |
| BstBI | TTCGAA | 1 cut(s) | 3002 |
| BstC8I | GCNNGC | 1 cut(s) | 1423 |
| BstDSI | CCRYGG | 3 cut(s) | 649, 1000, 1358 |
| BstEII | GGTNACC | 1 cut(s) | 2773 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 627 |
| BstF5I | GGATG | 9 cut(s) | 13, 484, 700, 781, 1414, 1522, 1740, 1951, 2588 |
| BstFNI | CGCG | 3 cut(s) | 1179, 1360, 2409 |
| BstHHI | GCGC | 1 cut(s) | 2409 |
| BstMAI | GTCTC | 7 cut(s) | 78, 954, 1097, 1167, 1191, 2163, 2183 |
| BstNI | CCWGG | 8 cut(s) | 705, 880, 1574, 1672, 2116, 2628, 2669, 2678 |
| BstNSI | RCATGY | 2 cut(s) | 462, 1319 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 461 |
| BstPI | GGTNACC | 1 cut(s) | 2773 |
| BstSCI | CCNGG | 8 cut(s) | 703, 878, 1572, 1670, 2114, 2626, 2667, 2676 |
| BstSFI | CTRYAG | 6 cut(s) | 1047, 1899, 1923, 2097, 2184, 2866 |
| BstSLI | GKGCMC | 1 cut(s) | 2260 |
| BstUI | CGCG | 3 cut(s) | 1179, 1360, 2409 |
| BstX2I | RGATCY | 2 cut(s) | 82, 1627 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 194 |
| BstYI | RGATCY | 2 cut(s) | 82, 1627 |
| Bsu15I | ATCGAT | 1 cut(s) | 1299 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2962 |
| BsuI | GTATCC | 2 cut(s) | 1882, 2230 |
| BsuRI | GGCC | 6 cut(s) | 223, 452, 904, 1084, 1572, 1670 |
| BsuTUI | ATCGAT | 1 cut(s) | 1299 |
| BtgI | CCRYGG | 3 cut(s) | 649, 1000, 1358 |
| BtsCI | GGATG | 9 cut(s) | 13, 484, 700, 781, 1414, 1522, 1740, 1951, 2588 |
| BtsIMutI | CAGTG | 4 cut(s) | 407, 560, 1067, 2892 |
| BveI | ACCTGC | 1 cut(s) | 620 |
| Cac8I | GCNNGC | 1 cut(s) | 1423 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1822 |
| CciI | TCATGA | 1 cut(s) | 694 |
| CfoI | GCGC | 1 cut(s) | 2409 |
| Cfr13I | GGNCC | 4 cut(s) | 1004, 1377, 1570, 1668 |
| Cfr42I | CCGCGG | 1 cut(s) | 1361 |
| ClaI | ATCGAT | 1 cut(s) | 1299 |
| CseI | GACGC | 2 cut(s) | 5, 451 |
| Csp6I | GTAC | 6 cut(s) | 654, 1014, 1114, 2306, 2434, 2541 |
| CviQI | GTAC | 6 cut(s) | 654, 1014, 1114, 2306, 2434, 2541 |
| EaeI | YGGCCR | 1 cut(s) | 450 |
| Eam1104I | CTCTTC | 6 cut(s) | 118, 381, 669, 2084, 2649, 2904 |
| EarI | CTCTTC | 6 cut(s) | 118, 381, 669, 2084, 2649, 2904 |
| Eco130I | CCWWGG | 4 cut(s) | 649, 1000, 2223, 2711 |
| Eco31I | GGTCTC | 6 cut(s) | 78, 954, 1097, 1167, 1191, 2183 |
| Eco32I | GATATC | 3 cut(s) | 160, 1138, 1388 |
| Eco47I | GGWCC | 2 cut(s) | 1004, 1377 |
| Eco57I | CTGAAG | 2 cut(s) | 609, 1788 |
| Eco81I | CCTNAGG | 1 cut(s) | 2962 |
| Eco88I | CYCGRG | 1 cut(s) | 2722 |
| Eco91I | GGTNACC | 1 cut(s) | 2773 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 627 |
| EcoO65I | GGTNACC | 1 cut(s) | 2773 |
| EcoRI | GAATTC | 4 cut(s) | 145, 229, 319, 2198 |
| EcoRII | CCWGG | 8 cut(s) | 703, 878, 1572, 1670, 2114, 2626, 2667, 2676 |
| EcoRV | GATATC | 3 cut(s) | 160, 1138, 1388 |
| EcoT14I | CCWWGG | 4 cut(s) | 649, 1000, 2223, 2711 |
| EcoT22I | ATGCAT | 2 cut(s) | 1707, 1834 |
| ErhI | CCWWGG | 4 cut(s) | 649, 1000, 2223, 2711 |
| Esp3I | CGTCTC | 1 cut(s) | 2163 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2823, 2855 |
| FaqI | GGGAC | 2 cut(s) | 942, 1363 |
| FauI | CCCGC | 2 cut(s) | 2378, 2600 |
| FauNDI | CATATG | 3 cut(s) | 435, 2084, 2857 |
| FbaI | TGATCA | 4 cut(s) | 697, 1332, 1465, 1534 |
| FokI | GGATG | 9 cut(s) | 20, 491, 687, 768, 1421, 1529, 1727, 1958, 2575 |
| FspBI | CTAG | 5 cut(s) | 741, 969, 1625, 1950, 3008 |
| GlaI | GCGC | 1 cut(s) | 2408 |
| GsuI | CTGGAG | 2 cut(s) | 1091, 1197 |
| HaeIII | GGCC | 6 cut(s) | 223, 452, 904, 1084, 1572, 1670 |
| HapII | CCGG | 2 cut(s) | 119, 1168 |
| HgaI | GACGC | 2 cut(s) | 5, 451 |
| HhaI | GCGC | 1 cut(s) | 2409 |
| Hin1I | GRCGYC | 1 cut(s) | 16 |
| Hin6I | GCGC | 1 cut(s) | 2407 |
| HinP1I | GCGC | 1 cut(s) | 2407 |
| HincII | GTYRAC | 1 cut(s) | 2029 |
| HindII | GTYRAC | 1 cut(s) | 2029 |
| HindIII | AAGCTT | 2 cut(s) | 832, 2832 |
| HpaII | CCGG | 2 cut(s) | 119, 1168 |
| HphI | GGTGA | 8 cut(s) | 79, 365, 602, 644, 1424, 1763, 2382, 2785 |
| Hpy166II | GTNNAC | 8 cut(s) | 656, 670, 1007, 1114, 1508, 2029, 2258, 2436 |
| Hpy8I | GTNNAC | 8 cut(s) | 656, 670, 1007, 1114, 1508, 2029, 2258, 2436 |
| HpyAV | CCTTC | 6 cut(s) | 185, 633, 1751, 2050, 2552, 2911 |
| HpyCH4III | ACNGT | 6 cut(s) | 209, 555, 1227, 1377, 1660, 2073 |
| HpyCH4IV | ACGT | 2 cut(s) | 2308, 2334 |
| HpySE526I | ACGT | 2 cut(s) | 2308, 2334 |
| Hsp92I | GRCGYC | 1 cut(s) | 16 |
| HspAI | GCGC | 1 cut(s) | 2407 |
| Ksp22I | TGATCA | 4 cut(s) | 697, 1332, 1465, 1534 |
| KspI | CCGCGG | 1 cut(s) | 1361 |
| LmnI | GCTCC | 1 cut(s) | 1592 |
| MaeI | CTAG | 5 cut(s) | 741, 969, 1625, 1950, 3008 |
| MaeII | ACGT | 2 cut(s) | 2308, 2334 |
| MaeIII | GTNAC | 3 cut(s) | 2388, 2519, 2773 |
| MbiI | CCGCTC | 1 cut(s) | 2582 |
| MfeI | CAATTG | 1 cut(s) | 585 |
| MflI | RGATCY | 2 cut(s) | 82, 1627 |
| MhlI | GDGCHC | 2 cut(s) | 2260, 2576 |
| MlsI | TGGCCA | 1 cut(s) | 452 |
| MluNI | TGGCCA | 1 cut(s) | 452 |
| MlyI | GAGTC | 7 cut(s) | 421, 610, 892, 898, 917, 1834, 2327 |
| MmeI | TCCRAC | 3 cut(s) | 313, 2055, 2921 |
| Mox20I | TGGCCA | 1 cut(s) | 452 |
| Mph1103I | ATGCAT | 2 cut(s) | 1707, 1834 |
| MroXI | GAANNNNTTC | 5 cut(s) | 182, 1781, 1841, 2416, 2851 |
| MscI | TGGCCA | 1 cut(s) | 452 |
| MseI | TTAA | 9 cut(s) | 132, 1056, 1194, 1230, 1404, 1865, 2007, 2456, 2633 |
| MslI | CAYNNNNRTG | 1 cut(s) | 705 |
| Msp20I | TGGCCA | 1 cut(s) | 452 |
| MspA1I | CMGCKG | 4 cut(s) | 1360, 2364, 2871, 2980 |
| MspI | CCGG | 2 cut(s) | 119, 1168 |
| MspR9I | CCNGG | 8 cut(s) | 705, 880, 1574, 1672, 2116, 2628, 2669, 2678 |
| MunI | CAATTG | 1 cut(s) | 585 |
| Mva1269I | GAATGC | 4 cut(s) | 1204, 1369, 2055, 2382 |
| MvaI | CCWGG | 8 cut(s) | 705, 880, 1574, 1672, 2116, 2628, 2669, 2678 |
| MvnI | CGCG | 3 cut(s) | 1179, 1360, 2409 |
| NcoI | CCATGG | 2 cut(s) | 649, 1000 |
| NdeI | CATATG | 3 cut(s) | 435, 2084, 2857 |
| NlaIV | GGNNCC | 4 cut(s) | 84, 1379, 2625, 2987 |
| NmuCI | GTSAC | 3 cut(s) | 2388, 2519, 2773 |
| NsiI | ATGCAT | 2 cut(s) | 1707, 1834 |
| NspI | RCATGY | 2 cut(s) | 462, 1319 |
| NspV | TTCGAA | 1 cut(s) | 3002 |
| PagI | TCATGA | 1 cut(s) | 694 |
| PaqCI | CACCTGC | 1 cut(s) | 620 |
| PciI | ACATGT | 1 cut(s) | 1315 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 601 |
| PctI | GAATGC | 4 cut(s) | 1204, 1369, 2055, 2382 |
| PdmI | GAANNNNTTC | 5 cut(s) | 182, 1781, 1841, 2416, 2851 |
| PleI | GAGTC | 7 cut(s) | 420, 609, 891, 897, 916, 1833, 2326 |
| PpsI | GAGTC | 7 cut(s) | 420, 609, 891, 897, 916, 1833, 2326 |
| Ppu21I | YACGTR | 1 cut(s) | 2309 |
| PscI | ACATGT | 1 cut(s) | 1315 |
| PshAI | GACNNNNGTC | 1 cut(s) | 461 |
| PshBI | ATTAAT | 1 cut(s) | 2633 |
| PsiI | TTATAA | 1 cut(s) | 1664 |
| Psp6I | CCWGG | 8 cut(s) | 703, 878, 1572, 1670, 2114, 2626, 2667, 2676 |
| PspEI | GGTNACC | 1 cut(s) | 2773 |
| PspGI | CCWGG | 8 cut(s) | 703, 878, 1572, 1670, 2114, 2626, 2667, 2676 |
| PspN4I | GGNNCC | 4 cut(s) | 84, 1379, 2625, 2987 |
| PspPI | GGNCC | 4 cut(s) | 1004, 1377, 1570, 1668 |
| PstI | CTGCAG | 4 cut(s) | 1051, 1903, 1927, 2870 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1822 |
| PsuI | RGATCY | 2 cut(s) | 82, 1627 |
| PvuII | CAGCTG | 2 cut(s) | 2364, 2980 |
| RsaI | GTAC | 6 cut(s) | 655, 1015, 1115, 2307, 2435, 2542 |
| RsaNI | GTAC | 6 cut(s) | 654, 1014, 1114, 2306, 2434, 2541 |
| RseI | CAYNNNNRTG | 1 cut(s) | 705 |
| SacII | CCGCGG | 1 cut(s) | 1361 |
| SaqAI | TTAA | 9 cut(s) | 132, 1056, 1194, 1230, 1404, 1865, 2007, 2456, 2633 |
| Sau96I | GGNCC | 4 cut(s) | 1004, 1377, 1570, 1668 |
| SchI | GAGTC | 7 cut(s) | 421, 610, 892, 898, 917, 1834, 2327 |
| ScrFI | CCNGG | 8 cut(s) | 705, 880, 1574, 1672, 2116, 2628, 2669, 2678 |
| SduI | GDGCHC | 2 cut(s) | 2260, 2576 |
| SfcI | CTRYAG | 6 cut(s) | 1047, 1899, 1923, 2097, 2184, 2866 |
| Sfr303I | CCGCGG | 1 cut(s) | 1361 |
| SfuI | TTCGAA | 1 cut(s) | 3002 |
| SgrBI | CCGCGG | 1 cut(s) | 1361 |
| SinI | GGWCC | 2 cut(s) | 1004, 1377 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 705 |
| SmlI | CTYRAG | 1 cut(s) | 1033 |
| SmoI | CTYRAG | 1 cut(s) | 1033 |
| SpeI | ACTAGT | 1 cut(s) | 3007 |
| SspMI | CTAG | 5 cut(s) | 741, 969, 1625, 1950, 3008 |
| StyD4I | CCNGG | 8 cut(s) | 703, 878, 1572, 1670, 2114, 2626, 2667, 2676 |
| StyI | CCWWGG | 4 cut(s) | 649, 1000, 2223, 2711 |
| TaaI | ACNGT | 6 cut(s) | 209, 555, 1227, 1377, 1660, 2073 |
| TaiI | ACGT | 2 cut(s) | 2311, 2337 |
| TaqI | TCGA | 4 cut(s) | 604, 918, 1299, 3002 |
| TatI | WGTACW | 3 cut(s) | 1113, 2433, 2540 |
| TauI | GCSGC | 4 cut(s) | 16, 1360, 2585, 2874 |
| Tru1I | TTAA | 9 cut(s) | 132, 1056, 1194, 1230, 1404, 1865, 2007, 2456, 2633 |
| Tru9I | TTAA | 9 cut(s) | 132, 1056, 1194, 1230, 1404, 1865, 2007, 2456, 2633 |
| TscAI | CASTG | 4 cut(s) | 414, 560, 1074, 2899 |
| TseFI | GTSAC | 3 cut(s) | 2388, 2519, 2773 |
| Tsp45I | GTSAC | 3 cut(s) | 2388, 2519, 2773 |
| TspRI | CASTG | 4 cut(s) | 414, 560, 1074, 2899 |
| VneI | GTGCAC | 1 cut(s) | 2256 |
| VpaK11BI | GGWCC | 2 cut(s) | 1004, 1377 |
| VspI | ATTAAT | 1 cut(s) | 2633 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 627 |
| XbaI | TCTAGA | 1 cut(s) | 968 |
| XceI | RCATGY | 2 cut(s) | 462, 1319 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1262 |
| XmnI | GAANNNNTTC | 5 cut(s) | 182, 1781, 1841, 2416, 2851 |
| XspI | CTAG | 5 cut(s) | 741, 969, 1625, 1950, 3008 |
| Zsp2I | ATGCAT | 2 cut(s) | 1707, 1834 |