pycom14g13860

DNA polymerase III

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
16706012 .. 16707538
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13860.1

Sequence Viewer

Length: 1527 bp
ATGATGGATGGGCGGCGACATTCTTTTGATATTCCTATCTCCAAAACTCTCGTGCAACTGAGGAGGGTGAGGTCTCTAAGGGATCCTGATACTAATTCTATGAGCAAGTTCTCTGCTTTGGTTGAGAATGTGAACTGGGAAACGAATTCGAGTAATGACATTTCTGTGCGGTTCATGAATAGTTTCCAAGAAGGTGGCTCTGGCAAACATCATTCTTTTAGATCAAAGAATCCGGGTCTGTATGGACAAGGAGGGGATTACATAGATGATTTTGAATTAGATCGTGGTTTAGGAAAATCTAGGTTGATCTTGCATGAGAATTCCGAGTGGATTGGAAGCACAGAGAGTCGTCCAATTAGGAGCAAACAAGTTGAAGAATTTGATTTTTCAGAATCAGATAAGGAAGATGTTTATGAAAATAAATTACTCAGCGATAGGTACTGCGGTGGTCAAATGGATAAAGGATTGGCCTTGACAGGCATCAATCGTTTGGAGGATGGGGATTATGAAGCAGCTGTTAGGTCATCAAATTTAGAAAGATTAGATCAGATTGCATCAAAGAGACAATCACAACGCAAAAATAATGTAAATTCATCCAGGAAAGTTGGTAATTTTAGTCAAGTTTGCAGTCCGTGCCACTCAGCAAGTGATGCTCTTTCAAGCCATAGTGCATCTTTATTTGTAAATGAAGAGGCTGATGCTGTGGATCACAATCGCCCTAGTTGCGAGGTCAGCTGCTGCTGGTCAAGAACCCCTCGATTCAGAGAAGCTAATTTTCCTTTCAATGTAGACGAATACCCTCTGCTATACAAGAATGTAGATGAGAGTGCGCTTTATGACCAGAGGAGCTCGAAACACATTCGTAATGATATGAGTCCACGATCAGAAAACCCTAGGAGTCTGAGTCAGAAATTCAGGCCAAAATCTTTTAATGAATTAGTGGGACAAAATGTAGTAGCGATGTCTCTTTTGGGAGCTATCGCTAGAGGGAGAATAACCTCATTCTATCTATTCCATGGCCCTCGTGGTACAGGAAAGACATCTGCCTCAAGGATTTTTGCTGCAGCACTAAATTGCCTTTCACATGAGAAGCATAGGCCATGTGGTCTCTGCTGTGAATGTGTTTTGTATTTTTCTGGAAGGAGCAGGGACATCAAGGAAGTTGATTCTGTGAGAATCAATCGGAGAGACAGGGTTAGATCCCTTATTAAGAATGCAGCTACTCCTCCACTTTCGTCACGGTTTAAGGTTTTCATTATTGATGAGTGCCACCTGATGCGCGGGGAAACTTGGGCAACTGTTTTGAATAGCATAGATAACCTTTCTCAACATGTTGTCTTCGTGATGCTCACTCCTGATGTCGATGAGCTTCCCCGAAGTGCAGTGTCACGGTCTCAAAGGTTTCACTTTCCAAAGATTAAGGATGCTGATATTGCAAGCAGATTGGGGAGAATCTGTGTTGAAGAGGGTCTTGAATTTGATCGGTGCTGTAGACTTCATTGCTGCCAAGTCAAACGGTTCACTTAG

Protein Analysis

509

Amino Acids

57.68

Weight (kDa)

8.68

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol3_delta2 PF13177 319 - 473 3.4e-22 DNA polymerase III, delta subunit
AAA PF00004 336 - 467 4e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 789, 1492
AccII CGCG 1 cut(s) 1281
AciI CCGC 4 cut(s) 13, 169, 444, 1281
AclWI GGATC 4 cut(s) 77, 90, 714, 1194
AcsI RAATTY 7 cut(s) 145, 319, 377, 529, 589, 911, 1475
AfaI GTAC 2 cut(s) 440, 1030
AflIII ACRYGT 1 cut(s) 1330
AgsI TTSAA 7 cut(s) 275, 374, 660, 784, 1306, 1463, 1475
AjnI CCWGG 1 cut(s) 596
AluBI AGCT 7 cut(s) 515, 735, 770, 849, 977, 1220, 1369
AluI AGCT 7 cut(s) 515, 735, 770, 849, 977, 1220, 1369
Alw21I GWGCWC 1 cut(s) 851
Alw26I GTCTC 6 cut(s) 78, 556, 969, 1112, 1182, 1398
AlwI GGATC 4 cut(s) 77, 90, 714, 1194
AlwNI CAGNNNCTG 1 cut(s) 738
AoxI GGCC 4 cut(s) 468, 917, 1018, 1097
ApeKI GCWGC 7 cut(s) 512, 735, 738, 1061, 1064, 1217, 1503
ApoI RAATTY 7 cut(s) 145, 319, 377, 529, 589, 911, 1475
Asp700I GAANNNNTTC 1 cut(s) 182
AspA2I CCTAGG 1 cut(s) 893
AspLEI GCGC 2 cut(s) 832, 1281
AspS9I GGNCC 1 cut(s) 1019
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 79
AvrII CCTAGG 1 cut(s) 893
BaeI ACNNNNGTAYC 2 cut(s) 430, 463
BamHI GGATCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 851
BauI CACGAG 2 cut(s) 50, 1023
BbsI GAAGAC 1 cut(s) 1330
Bbv12I GWGCWC 1 cut(s) 851
BbvI GCAGC 7 cut(s) 524, 722, 725, 1048, 1076, 1229, 1490
BccI CCATC 2 cut(s) 2, 491
BciT130I CCWGG 1 cut(s) 598
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 6 cut(s) 78, 556, 969, 1112, 1182, 1398
BfaI CTAG 4 cut(s) 300, 720, 894, 984
BfmI CTRYAG 2 cut(s) 1062, 1489
BisI GCNGC 8 cut(s) 14, 513, 736, 739, 1062, 1065, 1218, 1504
BlnI CCTAGG 1 cut(s) 893
BlsI GCNGC 8 cut(s) 15, 514, 737, 740, 1063, 1066, 1219, 1505
Bme1390I CCNGG 2 cut(s) 234, 598
BmgT120I GGNCC 1 cut(s) 1019
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 2 cut(s) 234, 598
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 8 cut(s) 489, 563, 640, 680, 688, 1266, 1335, 1414
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 1330
BpuEI CTTGAG 1 cut(s) 1033
BpuMI CCSGG 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 711
BsaI GGTCTC 3 cut(s) 78, 1112, 1398
BsaJI CCNNGG 2 cut(s) 893, 1015
BsaXI ACNNNNNCTCC 4 cut(s) 889, 919, 1441, 1471
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 1498
Bse8I GATNNNNATC 1 cut(s) 711
BseBI CCWGG 1 cut(s) 598
BseDI CCNNGG 2 cut(s) 893, 1015
BseGI GGATG 4 cut(s) 13, 502, 593, 1429
BseJI GATNNNNATC 1 cut(s) 711
BseMI GCAATG 1 cut(s) 1498
BseMII CTCAG 4 cut(s) 50, 442, 654, 893
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 3 cut(s) 76, 859, 1215
BseXI GCAGC 7 cut(s) 524, 722, 725, 1048, 1076, 1229, 1490
BsgI GTGCAG 1 cut(s) 1401
Bsh1236I CGCG 1 cut(s) 1281
BshFI GGCC 4 cut(s) 470, 919, 1020, 1099
BsiHKAI GWGCWC 1 cut(s) 851
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 957, 1163
BsmAI GTCTC 6 cut(s) 78, 556, 969, 1112, 1182, 1398
BsmFI GGGAC 2 cut(s) 957, 1163
BsmI GAATGC 1 cut(s) 1219
BsnI GGCC 4 cut(s) 470, 919, 1020, 1099
Bso31I GGTCTC 3 cut(s) 78, 1112, 1398
Bsp1286I GDGCHC 1 cut(s) 851
Bsp143I GATC 9 cut(s) 82, 221, 280, 306, 544, 706, 881, 1199, 1480
Bsp19I CCATGG 1 cut(s) 1015
BspACI CCGC 4 cut(s) 13, 169, 444, 1281
BspANI GGCC 4 cut(s) 470, 919, 1020, 1099
BspCNI CTCAG 4 cut(s) 51, 441, 653, 894
BspFNI CGCG 1 cut(s) 1281
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 1066
BspPI GGATC 4 cut(s) 77, 90, 714, 1194
BspTNI GGTCTC 3 cut(s) 78, 1112, 1398
BsrDI GCAATG 1 cut(s) 1498
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 893, 1015
BssMI GATC 9 cut(s) 82, 221, 280, 306, 544, 706, 881, 1199, 1480
BssSI CACGAG 2 cut(s) 50, 1023
BssT1I CCWWGG 2 cut(s) 893, 1015
Bst2BI CACGAG 2 cut(s) 50, 1023
Bst2UI CCWGG 1 cut(s) 598
Bst4CI ACNGT 4 cut(s) 1242, 1300, 1392, 1518
Bst6I CTCTTC 2 cut(s) 684, 1458
BstAPI GCANNNNNTGC 2 cut(s) 633, 650
BstC8I GCNNGC 1 cut(s) 1438
BstDEI CTNAG 6 cut(s) 59, 77, 428, 640, 902, 1524
BstDSI CCRYGG 1 cut(s) 1015
BstF5I GGATG 4 cut(s) 13, 502, 593, 1429
BstFNI CGCG 1 cut(s) 1281
BstHHI GCGC 2 cut(s) 832, 1281
BstKTI GATC 9 cut(s) 85, 224, 283, 309, 547, 709, 884, 1202, 1483
BstMAI GTCTC 6 cut(s) 78, 556, 969, 1112, 1182, 1398
BstMBI GATC 9 cut(s) 82, 221, 280, 306, 544, 706, 881, 1199, 1480
BstMWI GCNNNNNNNGC 5 cut(s) 633, 650, 723, 732, 1433
BstNI CCWGG 1 cut(s) 598
BstNSI RCATGY 1 cut(s) 1334
BstSCI CCNGG 2 cut(s) 232, 596
BstSFI CTRYAG 2 cut(s) 1062, 1489
BstUI CGCG 1 cut(s) 1281
BstV1I GCAGC 7 cut(s) 524, 722, 725, 1048, 1076, 1229, 1490
BstV2I GAAGAC 1 cut(s) 1330
BstX2I RGATCY 2 cut(s) 82, 1199
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 2 cut(s) 82, 1199
BsuRI GGCC 4 cut(s) 470, 919, 1020, 1099
BtgI CCRYGG 1 cut(s) 1015
BtgZI GCGATG 1 cut(s) 974
BtsCI GGATG 4 cut(s) 13, 502, 593, 1429
BtsI GCAGTG 1 cut(s) 1389
BtsIMutI CAGTG 1 cut(s) 1389
Cac8I GCNNGC 1 cut(s) 1438
CaiI CAGNNNCTG 1 cut(s) 738
CciI TCATGA 1 cut(s) 174
CfoI GCGC 2 cut(s) 832, 1281
Cfr13I GGNCC 1 cut(s) 1019
Csp6I GTAC 2 cut(s) 439, 1029
CviAII CATG 6 cut(s) 175, 314, 1016, 1085, 1101, 1331
CviQI GTAC 2 cut(s) 439, 1029
DdeI CTNAG 6 cut(s) 59, 77, 428, 640, 902, 1524
DpnI GATC 9 cut(s) 84, 223, 282, 308, 546, 708, 883, 1201, 1482
DpnII GATC 9 cut(s) 82, 221, 280, 306, 544, 706, 881, 1199, 1480
Eam1104I CTCTTC 2 cut(s) 684, 1458
EarI CTCTTC 2 cut(s) 684, 1458
Ecl136II GAGCTC 1 cut(s) 849
Eco130I CCWWGG 2 cut(s) 893, 1015
Eco24I GRGCYC 1 cut(s) 851
Eco31I GGTCTC 3 cut(s) 78, 1112, 1398
Eco53kI GAGCTC 1 cut(s) 849
EcoICRI GAGCTC 1 cut(s) 849
EcoRI GAATTC 2 cut(s) 145, 319
EcoRII CCWGG 1 cut(s) 596
EcoT14I CCWWGG 2 cut(s) 893, 1015
EcoT38I GRGCYC 1 cut(s) 851
ErhI CCWWGG 2 cut(s) 893, 1015
FaeI CATG 6 cut(s) 178, 317, 1019, 1088, 1104, 1334
FalI AAGNNNNNCTT 2 cut(s) 1455, 1487
FaqI GGGAC 2 cut(s) 957, 1163
FatI CATG 6 cut(s) 174, 313, 1015, 1084, 1100, 1330
FauI CCCGC 1 cut(s) 1274
FblI GTMKAC 2 cut(s) 789, 1492
Fnu4HI GCNGC 8 cut(s) 14, 513, 736, 739, 1062, 1065, 1218, 1504
FokI GGATG 4 cut(s) 20, 509, 580, 1436
FriOI GRGCYC 1 cut(s) 851
Fsp4HI GCNGC 8 cut(s) 14, 513, 736, 739, 1062, 1065, 1218, 1504
FspBI CTAG 4 cut(s) 300, 720, 894, 984
GlaI GCGC 2 cut(s) 831, 1280
GluI GCNGC 8 cut(s) 14, 513, 736, 739, 1062, 1065, 1218, 1504
HaeIII GGCC 4 cut(s) 470, 919, 1020, 1099
HapII CCGG 1 cut(s) 233
HhaI GCGC 2 cut(s) 832, 1281
Hin1II CATG 6 cut(s) 178, 317, 1019, 1088, 1104, 1334
Hin6I GCGC 2 cut(s) 830, 1279
HinP1I GCGC 2 cut(s) 830, 1279
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 5 cut(s) 133, 790, 878, 1493, 1521
Hpy188I TCNGA 9 cut(s) 325, 391, 397, 549, 764, 886, 903, 909, 1185
Hpy188III TCNNGA 7 cut(s) 86, 175, 747, 1137, 1342, 1355, 1472
Hpy8I GTNNAC 5 cut(s) 133, 790, 878, 1493, 1521
HpyAV CCTTC 2 cut(s) 185, 1134
HpyCH4III ACNGT 4 cut(s) 1242, 1300, 1392, 1518
HpyCH4V TGCA 9 cut(s) 55, 313, 554, 627, 671, 1064, 1217, 1382, 1436
HpyF10VI GCNNNNNNNGC 5 cut(s) 633, 650, 723, 732, 1433
HpyF3I CTNAG 6 cut(s) 59, 77, 428, 640, 902, 1524
Hsp92II CATG 6 cut(s) 178, 317, 1019, 1088, 1104, 1334
HspAI GCGC 2 cut(s) 830, 1279
Kzo9I GATC 9 cut(s) 82, 221, 280, 306, 544, 706, 881, 1199, 1480
LmnI GCTCC 4 cut(s) 360, 846, 974, 1143
Lsp1109I GCAGC 7 cut(s) 524, 722, 725, 1048, 1076, 1229, 1490
LweI GCATC 8 cut(s) 489, 563, 640, 680, 688, 1266, 1335, 1414
MaeI CTAG 4 cut(s) 300, 720, 894, 984
MaeIII GTNAC 2 cut(s) 1236, 1386
MalI GATC 9 cut(s) 84, 223, 282, 308, 546, 708, 883, 1201, 1482
MboI GATC 9 cut(s) 82, 221, 280, 306, 544, 706, 881, 1199, 1480
MboII GAAGA 5 cut(s) 386, 416, 701, 1330, 1475
MflI RGATCY 2 cut(s) 82, 1199
MhlI GDGCHC 1 cut(s) 851
MlyI GAGTC 4 cut(s) 355, 883, 907, 913
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 4 cut(s) 930, 1209, 1245, 1419
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 2 cut(s) 515, 735
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 234, 598
Mva1269I GAATGC 1 cut(s) 1219
MvaI CCWGG 1 cut(s) 598
MvnI CGCG 1 cut(s) 1281
MwoI GCNNNNNNNGC 5 cut(s) 633, 650, 723, 732, 1433
NciI CCSGG 1 cut(s) 234
NcoI CCATGG 1 cut(s) 1015
NdeII GATC 9 cut(s) 82, 221, 280, 306, 544, 706, 881, 1199, 1480
NlaIII CATG 6 cut(s) 178, 317, 1019, 1088, 1104, 1334
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 1236, 1386
NspI RCATGY 1 cut(s) 1334
PagI TCATGA 1 cut(s) 174
PciI ACATGT 1 cut(s) 1330
PctI GAATGC 1 cut(s) 1219
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 6 cut(s) 229, 392, 759, 1166, 1176, 1452
PfoI TCCNGGA 1 cut(s) 596
PkrI GCNGC 8 cut(s) 15, 514, 737, 740, 1063, 1066, 1219, 1505
PleI GAGTC 4 cut(s) 354, 882, 906, 912
PpsI GAGTC 4 cut(s) 354, 882, 906, 912
PscI ACATGT 1 cut(s) 1330
Psp124BI GAGCTC 1 cut(s) 851
Psp6I CCWGG 1 cut(s) 596
PspGI CCWGG 1 cut(s) 596
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 1019
PstI CTGCAG 1 cut(s) 1066
PstNI CAGNNNCTG 1 cut(s) 738
PsuI RGATCY 2 cut(s) 82, 1199
PvuII CAGCTG 2 cut(s) 515, 735
RsaI GTAC 2 cut(s) 440, 1030
RsaNI GTAC 2 cut(s) 439, 1029
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 851
SaqAI TTAA 4 cut(s) 930, 1209, 1245, 1419
SatI GCNGC 8 cut(s) 14, 513, 736, 739, 1062, 1065, 1218, 1504
Sau3AI GATC 9 cut(s) 82, 221, 280, 306, 544, 706, 881, 1199, 1480
Sau96I GGNCC 1 cut(s) 1019
SchI GAGTC 4 cut(s) 355, 883, 907, 913
ScrFI CCNGG 2 cut(s) 234, 598
SduI GDGCHC 1 cut(s) 851
SfaNI GCATC 8 cut(s) 489, 563, 640, 680, 688, 1266, 1335, 1414
SfcI CTRYAG 2 cut(s) 1062, 1489
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 1048
SmoI CTYRAG 1 cut(s) 1048
SsiI CCGC 4 cut(s) 13, 169, 444, 1281
SspMI CTAG 4 cut(s) 300, 720, 894, 984
SstI GAGCTC 1 cut(s) 851
StyD4I CCNGG 2 cut(s) 232, 596
StyI CCWWGG 2 cut(s) 893, 1015
TaaI ACNGT 4 cut(s) 1242, 1300, 1392, 1518
TaqI TCGA 4 cut(s) 149, 757, 851, 1362
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 6 cut(s) 229, 392, 759, 1166, 1176, 1452
Tru1I TTAA 4 cut(s) 930, 1209, 1245, 1419
Tru9I TTAA 4 cut(s) 930, 1209, 1245, 1419
TscAI CASTG 1 cut(s) 1389
TseFI GTSAC 2 cut(s) 1236, 1386
TseI GCWGC 7 cut(s) 512, 735, 738, 1061, 1064, 1217, 1503
Tsp45I GTSAC 2 cut(s) 1236, 1386
TspDTI ATGAA 9 cut(s) 163, 191, 429, 522, 582, 702, 948, 1243, 1487
TspGWI ACGGA 1 cut(s) 621
TspRI CASTG 1 cut(s) 1389
XapI RAATTY 7 cut(s) 145, 319, 377, 529, 589, 911, 1475
XceI RCATGY 1 cut(s) 1334
XcmI CCANNNNNNNNNTGG 1 cut(s) 1022
XmaJI CCTAGG 1 cut(s) 893
XmiI GTMKAC 2 cut(s) 789, 1492
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 4 cut(s) 300, 720, 894, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.