Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

58563595 .. 58565315

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG416100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATGGGCTTGGCATACGAGCTTATTGGAGCTGTTTCTGATGATGAATTACTCGATTTGCTAGATCTGGCATTGTCATCTGACACTTCTAATACAGTTTTAAGGGCCTGGGAGTTGATGAGATCAAGGATTGATCCGATGCAACTTATATCGCAGTTGGCAAATCTTATTATGGACATCCTTGCTGGTGAGGAAGGTGGTTCTGAAGTCCTGAAACAGTTCTCTCGTAGGCATACCTGGCAGAGCTTCAAGATTCTTGACCCTACTTCATGCAATGTCAACACATCAGACAAGTTGGGAATGCAAAAGGATATTGATGAACAGTTGGAATCCGTATGGAAGAGAGCTATAGATTTATGGCAATCTAAGTCATTCAAGAACTTTTTGAGGAAACAAGGAAGATTGTCGTCTCTATTTGTGAATCAAGGTCTCGCTATAGCTGAATTGGAATTCTGCCACCCTGATTATGTATCCAAGGCTGAGAAGTCATGGAAAATCATTGCAAGTGCACTCCAATCTCTATTCGGTTGTAATGTGGAGATCAGGATCAATCTTGCACGTGCTACCGAGTCAAAGTATGCAAACGTGAAGAAGCCATCTTTTAGGTTGTTCAGCTGTTCCCGCAGAATGCAACAAAAGTCACCATCTTTCTGTGAGCGCGGAAGTGGTTCAGACTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

240

Amino Acids

27.16

Weight (kDa)

8.23

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaA_N-like_STI	PF23007	115 - 198	3.2e-30	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	699
AciI	CCGC	2 cut(s)	661, 699
AclWI	GGATC	2 cut(s)	167, 593
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	264
AcvI	CACGTG	1 cut(s)	599
AgsI	TTSAA	2 cut(s)	289, 415
AjnI	CCWGG	2 cut(s)	146, 275
AluBI	AGCT	7 cut(s)	16, 61, 71, 285, 386, 479, 654
AluI	AGCT	7 cut(s)	16, 61, 71, 285, 386, 479, 654
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	2 cut(s)	453, 473
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	167, 593
AoxI	GGCC	1 cut(s)	144
ApaLI	GTGCAC	1 cut(s)	546
ApoI	RAATTY	1 cut(s)	488
Asp700I	GAANNNNTTC	2 cut(s)	257, 706
AspLEI	GCGC	1 cut(s)	699
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	239, 672
BaeGI	GKGCMC	1 cut(s)	550
BbrPI	CACGTG	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	550
BccI	CCATC	2 cut(s)	643, 691
BciT130I	CCWGG	2 cut(s)	148, 277
BciVI	GTATCC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	453, 473
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	2 cut(s)	387, 474
BfuI	GTATCC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	148, 277
BmgT120I	GGNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	148, 277
BmsI	GCATC	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	147, 513
Bse3DI	GCAATG	2 cut(s)	319, 537
Bse8I	GATNNNNATC	1 cut(s)	584
BseBI	CCWGG	2 cut(s)	148, 277
BseDI	CCNNGG	2 cut(s)	147, 513
BseGI	GGATG	1 cut(s)	216
BseJI	GATNNNNATC	1 cut(s)	584
BseMI	GCAATG	2 cut(s)	319, 537
BseMII	CTCAG	1 cut(s)	510
BseSI	GKGCMC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	550
BsmAI	GTCTC	2 cut(s)	453, 473
BsmBI	CGTCTC	1 cut(s)	453
BsmI	GAATGC	2 cut(s)	345, 672
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	6 cut(s)	10, 103, 161, 172, 579, 585
BspACI	CCGC	2 cut(s)	661, 699
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	699
BspPI	GGATC	2 cut(s)	167, 593
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	2 cut(s)	319, 537
BssECI	CCNNGG	2 cut(s)	147, 513
BssMI	GATC	6 cut(s)	10, 103, 161, 172, 579, 585
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	148, 277
Bst4CI	ACNGT	3 cut(s)	136, 258, 363
Bst6I	CTCTTC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	599
BstDEI	CTNAG	3 cut(s)	17, 405, 519
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	699
BstKTI	GATC	6 cut(s)	13, 106, 164, 175, 582, 588
BstMAI	GTCTC	2 cut(s)	453, 473
BstMBI	GATC	6 cut(s)	10, 103, 161, 172, 579, 585
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 22, 277, 660
BstNI	CCWGG	2 cut(s)	148, 277
BstSCI	CCNGG	2 cut(s)	146, 275
BstSFI	CTRYAG	2 cut(s)	387, 474
BstSLI	GKGCMC	1 cut(s)	550
BstUI	CGCG	1 cut(s)	699
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	699
Cfr13I	GGNCC	1 cut(s)	144
CviAII	CATG	2 cut(s)	309, 528
DdeI	CTNAG	3 cut(s)	17, 405, 519
DpnI	GATC	6 cut(s)	12, 105, 163, 174, 581, 587
DpnII	GATC	6 cut(s)	10, 103, 161, 172, 579, 585
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	513
Eco31I	GGTCTC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	264
Eco72I	CACGTG	1 cut(s)	599
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	146, 275
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	2 cut(s)	312, 531
FatI	CATG	2 cut(s)	308, 527
FauI	CCCGC	1 cut(s)	668
FbaI	TGATCA	1 cut(s)	10
FokI	GGATG	1 cut(s)	203
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	698
HaeIII	GGCC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	699
Hin1II	CATG	2 cut(s)	312, 531
Hin6I	GCGC	1 cut(s)	697
HinP1I	GCGC	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	4 cut(s)	292, 368, 460, 608
HphI	GGTGA	2 cut(s)	239, 672
Hpy166II	GTNNAC	2 cut(s)	319, 548
Hpy188I	TCNGA	6 cut(s)	79, 121, 177, 244, 328, 712
Hpy188III	TCNNGA	6 cut(s)	250, 289, 296, 415, 583, 720
Hpy8I	GTNNAC	2 cut(s)	319, 548
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	3 cut(s)	136, 258, 363
HpyCH4IV	ACGT	2 cut(s)	598, 624
HpyCH4V	TGCA	8 cut(s)	181, 312, 343, 542, 548, 596, 620, 670
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 22, 277, 660
HpyF3I	CTNAG	3 cut(s)	17, 405, 519
HpySE526I	ACGT	2 cut(s)	598, 624
Hsp92II	CATG	2 cut(s)	312, 531
HspAI	GCGC	1 cut(s)	697
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	6 cut(s)	10, 103, 161, 172, 579, 585
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	9 cut(s)	92, 133, 160, 210, 262, 263, 289, 513, 568
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	2 cut(s)	598, 624
MaeIII	GTNAC	1 cut(s)	678
MalI	GATC	6 cut(s)	12, 105, 163, 174, 581, 587
MboI	GATC	6 cut(s)	10, 103, 161, 172, 579, 585
MboII	GAAGA	3 cut(s)	391, 450, 640
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	3 cut(s)	86, 482, 488
MlyI	GAGTC	1 cut(s)	617
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	2 cut(s)	223, 420
MroXI	GAANNNNTTC	2 cut(s)	257, 706
MseI	TTAA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	654
MspR9I	CCNGG	2 cut(s)	148, 277
Mva1269I	GAATGC	2 cut(s)	345, 672
MvaI	CCWGG	2 cut(s)	148, 277
MvnI	CGCG	1 cut(s)	699
MwoI	GCNNNNNNNGC	4 cut(s)	13, 22, 277, 660
NdeII	GATC	6 cut(s)	10, 103, 161, 172, 579, 585
NlaIII	CATG	2 cut(s)	312, 531
NmuCI	GTSAC	1 cut(s)	678
PctI	GAATGC	2 cut(s)	345, 672
PdmI	GAANNNNTTC	2 cut(s)	257, 706
PfeI	GAWTC	3 cut(s)	292, 368, 460
PleI	GAGTC	1 cut(s)	616
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	616
Ppu21I	YACGTR	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	146, 275
PspCI	CACGTG	1 cut(s)	599
PspGI	CCWGG	2 cut(s)	146, 275
PspPI	GGNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	654
SaqAI	TTAA	1 cut(s)	140
Sau3AI	GATC	6 cut(s)	10, 103, 161, 172, 579, 585
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	617
ScrFI	CCNGG	2 cut(s)	148, 277
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	168
SfcI	CTRYAG	2 cut(s)	387, 474
Sse9I	AATT	3 cut(s)	86, 482, 488
SsiI	CCGC	2 cut(s)	661, 699
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	146, 275
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	136, 258, 363
TaiI	ACGT	2 cut(s)	601, 627
TaqI	TCGA	1 cut(s)	93
TasI	AATT	3 cut(s)	86, 482, 488
TfiI	GAWTC	3 cut(s)	292, 368, 460
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	678
Tsp45I	GTSAC	1 cut(s)	678
TspDTI	ATGAA	3 cut(s)	99, 297, 372
TspGWI	ACGGA	1 cut(s)	361
VneI	GTGCAC	1 cut(s)	546
XapI	RAATTY	1 cut(s)	488
XmnI	GAANNNNTTC	2 cut(s)	257, 706
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.