Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Forward (+)

14965624 .. 14967646

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001389

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAATGCAGCTACACCTCCCGTTTCTTCACGGTTTAAGGTTTTCATCATTGATGAGTGCCACTTGATGCGTGGGGAAACATGGGCCACTATTTTGAGTAGCATCGATAACCTTTCTCAAAATGTAGTCTTTGTGATGATCACTCCTGATCTGGATAAGCTGCCGCGGAATCAGTATCACGAGGGTCTTGAGTTTGATCAGGTTGCTTTAAACTTCATTACTGCCAAATCAAATGGTTCACTTAGGGATGCAGAGATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATGGGCTTGGCATACGATCTTATTGGAGCTGTTTCTGATGATGAATTACTCGATTTGCTAGATCTGGCATTGTCATCTGACACTTCAAATACAGTTTTAAGGGCTAGGGAGTTGATGAGATCAAGGATTGATCCGATGCAACTTATATCGCAGTTGGCAAATCTTGTTATGGACATCCTTGCTGGTGAGGAAGGTGGTTCTGAAGTCCAGAAACAGTTCTCTCGTAGGCATACCTGTAAGGTATCCAAGAATCAAACAACATGGCTTACTGCAGCTCTATTGCAGCTAAGCTCTGCGGAATCCTCCTCCTCATTGGATGATAGTGATACAAAGAGACAGAGCTTCAAGATTCTTGACCCTACTTCATGCAATGTCAAAACATCAGACAAGTTGGGAATGCAAAAGGATATTGATGAACAGTTGGAATCCCTGTTCCCGCAGAATGCAACAAAAGTCACCATCTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

256

Amino Acids

28.34

Weight (kDa)

4.81

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	166
AciI	CCGC	4 cut(s)	164, 166, 593, 734
AclWI	GGATC	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	519
AgsI	TTSAA	2 cut(s)	384, 643
AloI	GAACNNNNNNTCC	2 cut(s)	713, 745
AluBI	AGCT	8 cut(s)	11, 160, 271, 326, 572, 583, 588, 639
AluI	AGCT	8 cut(s)	11, 160, 271, 326, 572, 583, 588, 639
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	4 cut(s)	8, 160, 569, 580
Asp700I	GAANNNNTTC	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	494, 745
BauI	CACGAG	1 cut(s)	179
BbvI	GCAGC	4 cut(s)	20, 147, 581, 592
BccI	CCATC	1 cut(s)	764
BciVI	GTATCC	1 cut(s)	550
BclI	TGATCA	3 cut(s)	138, 196, 265
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	2 cut(s)	356, 402
BfmI	CTRYAG	1 cut(s)	567
BfuI	GTATCC	1 cut(s)	550
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	5 cut(s)	9, 161, 164, 570, 581
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	5 cut(s)	10, 162, 165, 571, 582
BmgT120I	GGNCC	1 cut(s)	84
BmsI	GCATC	5 cut(s)	57, 111, 238, 249, 423
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	673
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	3 cut(s)	253, 471, 619
BseMI	GCAATG	1 cut(s)	673
BseRI	GAGGAG	2 cut(s)	592, 595
BseXI	GCAGC	4 cut(s)	20, 147, 581, 592
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	625
BsmI	GAATGC	3 cut(s)	10, 699, 745
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	8 cut(s)	138, 148, 196, 265, 313, 358, 416, 427
Bsp1720I	GCTNAGC	1 cut(s)	584
BspACI	CCGC	4 cut(s)	164, 166, 593, 734
BspANI	GGCC	1 cut(s)	86
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	8 cut(s)	138, 148, 196, 265, 313, 358, 416, 427
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst4CI	ACNGT	4 cut(s)	33, 391, 513, 717
BstDEI	CTNAG	3 cut(s)	242, 272, 584
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	253, 471, 619
BstFNI	CGCG	1 cut(s)	166
BstKTI	GATC	8 cut(s)	141, 151, 199, 268, 316, 361, 419, 430
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	8 cut(s)	138, 148, 196, 265, 313, 358, 416, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 277
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	4 cut(s)	20, 147, 581, 592
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	3 cut(s)	253, 471, 619
Cfr13I	GGNCC	1 cut(s)	84
Cfr42I	CCGCGG	1 cut(s)	167
ClaI	ATCGAT	1 cut(s)	105
CviAII	CATG	3 cut(s)	81, 558, 663
DdeI	CTNAG	3 cut(s)	242, 272, 584
DpnI	GATC	8 cut(s)	140, 150, 198, 267, 315, 360, 418, 429
DpnII	GATC	8 cut(s)	138, 148, 196, 265, 313, 358, 416, 427
DraI	TTTAAA	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	519
FaeI	CATG	3 cut(s)	84, 561, 666
FaiI	YATR	7 cut(s)	82, 310, 443, 467, 528, 559, 664
FatI	CATG	3 cut(s)	80, 557, 662
FauI	CCCGC	1 cut(s)	741
FbaI	TGATCA	3 cut(s)	138, 196, 265
Fnu4HI	GCNGC	5 cut(s)	9, 161, 164, 570, 581
FokI	GGATG	3 cut(s)	260, 458, 626
Fsp4HI	GCNGC	5 cut(s)	9, 161, 164, 570, 581
FspBI	CTAG	2 cut(s)	356, 402
GluI	GCNGC	5 cut(s)	9, 161, 164, 570, 581
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	84, 561, 666
HinfI	GANTC	5 cut(s)	169, 547, 596, 646, 722
HphI	GGTGA	2 cut(s)	494, 745
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	5 cut(s)	334, 376, 432, 499, 682
Hpy188III	TCNNGA	7 cut(s)	146, 152, 179, 188, 505, 643, 650
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	4 cut(s)	33, 391, 513, 717
HpyCH4V	TGCA	8 cut(s)	8, 251, 436, 569, 580, 666, 697, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 277
HpyF3I	CTNAG	3 cut(s)	242, 272, 584
Hsp92II	CATG	3 cut(s)	84, 561, 666
Ksp22I	TGATCA	3 cut(s)	138, 196, 265
KspI	CCGCGG	1 cut(s)	167
Kzo9I	GATC	8 cut(s)	138, 148, 196, 265, 313, 358, 416, 427
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	8 cut(s)	137, 159, 185, 347, 465, 518, 544, 740
Lsp1109I	GCAGC	4 cut(s)	20, 147, 581, 592
LweI	GCATC	5 cut(s)	57, 111, 238, 249, 423
MaeI	CTAG	2 cut(s)	356, 402
MaeIII	GTNAC	1 cut(s)	751
MalI	GATC	8 cut(s)	140, 150, 198, 267, 315, 360, 418, 429
MboI	GATC	8 cut(s)	138, 148, 196, 265, 313, 358, 416, 427
MboII	GAAGA	1 cut(s)	18
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	699
MnlI	CCTC	6 cut(s)	27, 175, 478, 610, 613, 616
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	3 cut(s)	36, 209, 395
MspA1I	CMGCKG	1 cut(s)	166
Mva1269I	GAATGC	3 cut(s)	10, 699, 745
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	2 cut(s)	268, 277
NdeII	GATC	8 cut(s)	138, 148, 196, 265, 313, 358, 416, 427
NlaIII	CATG	3 cut(s)	84, 561, 666
NmuCI	GTSAC	1 cut(s)	751
PctI	GAATGC	3 cut(s)	10, 699, 745
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	5 cut(s)	169, 547, 596, 646, 722
PkrI	GCNGC	5 cut(s)	10, 162, 165, 571, 582
PspPI	GGNCC	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	358
SacII	CCGCGG	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	36, 209, 395
SatI	GCNGC	5 cut(s)	9, 161, 164, 570, 581
Sau3AI	GATC	8 cut(s)	138, 148, 196, 265, 313, 358, 416, 427
Sau96I	GGNCC	1 cut(s)	84
SfaNI	GCATC	5 cut(s)	57, 111, 238, 249, 423
SfcI	CTRYAG	1 cut(s)	567
Sfr303I	CCGCGG	1 cut(s)	167
SgrBI	CCGCGG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	4 cut(s)	164, 166, 593, 734
SspMI	CTAG	2 cut(s)	356, 402
TaaI	ACNGT	4 cut(s)	33, 391, 513, 717
TaqI	TCGA	2 cut(s)	105, 348
TasI	AATT	1 cut(s)	341
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	5 cut(s)	169, 547, 596, 646, 722
Tru1I	TTAA	3 cut(s)	36, 209, 395
Tru9I	TTAA	3 cut(s)	36, 209, 395
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	4 cut(s)	8, 160, 569, 580
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	6 cut(s)	17, 34, 205, 354, 651, 726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	2 cut(s)	356, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.