Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

57917626 .. 57918567

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG411900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGTGGTTGTAAGTACATTGAGAAATAGTGAAGTTAACGTACTGAGCACAAGAGCGGCCTCATCCTGCAGATCGTTTGAAGACGATACACCAAAGGCACCTGGATTAATGTTTGATCCTTCAAAGGAAGAGGGAAGCAACCAGGACTGCCAGGTTTTATCTTTTCATCAACCTGAACATCAACCAAGGTGTTTCCCGAGAACTCTGAGGATTCAAAAGAAGTTGTGTTCCACAGATGCTACTCAGGTGACTTGTTGTACCAAACTACAAAACAAGTTTGCAGTCCCAACTAGGACATCTTTTAACGCCTGTCTTTTGGGAAGCGATTCATATGCTTTCTGCGGCGGCTCTGACAATGGGAACAACGCCGGCAACTATAAGGAAGAGTTGAAGGAAAATTCAGGTGTGCTTTGTTGGAAAATCCTGCTTCCCTCAAGAAAGGATTGGCAGCTGAGGCAACAACAGCAAAATTCGAGAATAGTTGGGTGGGTTCTTCCATGTGCAACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

170

Amino Acids

18.91

Weight (kDa)

8.55

Isoelectric Point (pI)

50.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	3 cut(s)	56, 342, 345
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	397, 469
AfaI	GTAC	3 cut(s)	16, 42, 259
AgsI	TTSAA	4 cut(s)	80, 123, 215, 391
AjnI	CCWGG	3 cut(s)	100, 141, 150
AluBI	AGCT	1 cut(s)	451
AluI	AGCT	1 cut(s)	451
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	2 cut(s)	397, 469
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	3 cut(s)	102, 143, 152
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	67
BisI	GCNGC	4 cut(s)	57, 343, 346, 449
BlsI	GCNGC	4 cut(s)	58, 344, 347, 450
Bme1390I	CCNGG	3 cut(s)	102, 143, 152
BmeT110I	CYCGRG	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	3 cut(s)	102, 143, 152
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	368
BseBI	CCWGG	3 cut(s)	102, 143, 152
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	62
BseMII	CTCAG	4 cut(s)	35, 197, 257, 443
BseXI	GCAGC	1 cut(s)	460
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	71, 115
BspACI	CCGC	3 cut(s)	56, 342, 345
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	4 cut(s)	36, 198, 256, 444
BspLI	GGNNCC	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	71
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	2 cut(s)	71, 115
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	3 cut(s)	102, 143, 152
Bst6I	CTCTTC	2 cut(s)	123, 378
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	5 cut(s)	44, 206, 243, 452, 510
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	74, 118
BstMBI	GATC	2 cut(s)	71, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	454, 463
BstNI	CCWGG	3 cut(s)	102, 143, 152
BstSCI	CCNGG	3 cut(s)	100, 141, 150
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	460
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	368
Csp6I	GTAC	3 cut(s)	15, 41, 258
CviAII	CATG	1 cut(s)	498
CviJI	RGCY	3 cut(s)	59, 348, 451
CviKI_1	RGCY	3 cut(s)	59, 348, 451
CviQI	GTAC	3 cut(s)	15, 41, 258
DdeI	CTNAG	5 cut(s)	44, 206, 243, 452, 510
DpnI	GATC	2 cut(s)	73, 117
DpnII	GATC	2 cut(s)	71, 115
Eam1104I	CTCTTC	2 cut(s)	123, 378
EarI	CTCTTC	2 cut(s)	123, 378
Eco130I	CCWWGG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	196
EcoRII	CCWGG	3 cut(s)	100, 141, 150
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	1 cut(s)	501
FaiI	YATR	4 cut(s)	331, 333, 378, 499
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	497
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	57, 343, 346, 449
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	4 cut(s)	57, 343, 346, 449
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	4 cut(s)	57, 343, 346, 449
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	1 cut(s)	501
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	211, 326
HpaI	GTTAAC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	207, 352
Hpy188III	TCNNGA	3 cut(s)	196, 435, 474
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	2 cut(s)	129, 385
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	69, 281, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	454, 463
HpyF3I	CTNAG	5 cut(s)	44, 206, 243, 452, 510
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	501
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	71, 115
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	73, 117
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	2 cut(s)	71, 115
MboII	GAAGA	4 cut(s)	92, 140, 395, 485
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	2 cut(s)	397, 469
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	5 cut(s)	70, 124, 201, 442, 447
MroNI	GCCGGC	1 cut(s)	368
MroXI	GAANNNNTTC	1 cut(s)	325
MseI	TTAA	3 cut(s)	36, 107, 303
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	3 cut(s)	102, 143, 152
MvaI	CCWGG	3 cut(s)	102, 143, 152
MwoI	GCNNNNNNNGC	2 cut(s)	454, 463
NaeI	GCCGGC	1 cut(s)	370
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	2 cut(s)	71, 115
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	501
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	211, 326
PkrI	GCNGC	4 cut(s)	58, 344, 347, 450
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	3 cut(s)	100, 141, 150
PspGI	CCWGG	3 cut(s)	100, 141, 150
PspN4I	GGNNCC	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	3 cut(s)	16, 42, 259
RsaNI	GTAC	3 cut(s)	15, 41, 258
SaqAI	TTAA	3 cut(s)	36, 107, 303
SatI	GCNGC	4 cut(s)	57, 343, 346, 449
Sau3AI	GATC	2 cut(s)	71, 115
ScrFI	CCNGG	3 cut(s)	102, 143, 152
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	8 cut(s)	42, 103, 156, 175, 191, 249, 406, 453
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	2 cut(s)	397, 469
SsiI	CCGC	3 cut(s)	56, 342, 345
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	3 cut(s)	100, 141, 150
StyI	CCWWGG	1 cut(s)	185
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	473
TasI	AATT	2 cut(s)	397, 469
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	3 cut(s)	59, 345, 348
TfiI	GAWTC	2 cut(s)	211, 326
Tru1I	TTAA	3 cut(s)	36, 107, 303
Tru9I	TTAA	3 cut(s)	36, 107, 303
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	155, 318
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	2 cut(s)	397, 469
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.