Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8237971.1

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Forward (+)

46 .. 637

Gene Structure 592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8237971.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgatcactcctgatctggataagctgccgcggaatgcagtatcacggtcccagagatatcactttccaaagattaaggatggtgatattgcaagcaagttgggaaaaatctgtgttgtagagggtcttgaatttgatcaggttgctttgaacttcattgctgccaaatcaaatggttcacttagggatgcagagatgatgcttgatcagctaagtttgcttggtaaaagaatcacaatgggcctggcatacgagcttattggagctgtttctgatgatgaattgcttgatttgctagatctggcattgtcatctgacacttctaatacagttataagggccagggagttgatgagatcaaggattgatcccatgcaacttatatcgcagttggcaaatcttattatggacatccttgctggtgaggaaggtggttctgaagtccagaaaaagttttctcgtaggcatacctgtaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

159

Amino Acids

17.64

Weight (kDa)

5.72

Isoelectric Point (pI)

26.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccII	CGCG	1 cut(s)	31
AciI	CCGC	2 cut(s)	29, 31
AclWI	GGATC	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	459
AgsI	TTSAA	2 cut(s)	131, 151
AjnI	CCWGG	2 cut(s)	243, 341
AluBI	AGCT	4 cut(s)	25, 211, 256, 266
AluI	AGCT	4 cut(s)	25, 211, 256, 266
AlwI	GGATC	1 cut(s)	362
AoxI	GGCC	2 cut(s)	241, 339
ApeKI	GCWGC	2 cut(s)	25, 161
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	3 cut(s)	48, 241, 339
AsuHPI	GGTGA	2 cut(s)	95, 434
AvaII	GGWCC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	12, 148
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	245, 343
BclI	TGATCA	3 cut(s)	3, 136, 205
BfaI	CTAG	1 cut(s)	296
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	3 cut(s)	26, 29, 162
BlsI	GCNGC	3 cut(s)	27, 30, 163
Bme1390I	CCNGG	2 cut(s)	245, 343
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	3 cut(s)	48, 241, 339
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	245, 343
BmsI	GCATC	2 cut(s)	178, 189
BsaJI	CCNNGG	2 cut(s)	29, 342
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	245, 343
BseDI	CCNNGG	2 cut(s)	29, 342
BseGI	GGATG	3 cut(s)	85, 193, 411
BseMI	GCAATG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	12, 148
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	243, 341
BslFI	GGGAC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	243, 341
Bsp143I	GATC	7 cut(s)	3, 13, 136, 205, 298, 356, 367
BspACI	CCGC	2 cut(s)	29, 31
BspANI	GGCC	2 cut(s)	243, 341
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	29, 342
BssMI	GATC	7 cut(s)	3, 13, 136, 205, 298, 356, 367
Bst2UI	CCWGG	2 cut(s)	245, 343
Bst4CI	ACNGT	2 cut(s)	48, 331
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	182, 212
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	3 cut(s)	85, 193, 411
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	7 cut(s)	6, 16, 139, 208, 301, 359, 370
BstMBI	GATC	7 cut(s)	3, 13, 136, 205, 298, 356, 367
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 217, 292
BstNI	CCWGG	2 cut(s)	245, 343
BstSCI	CCNGG	2 cut(s)	243, 341
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	2 cut(s)	12, 148
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	243, 341
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	85, 193, 411
Cac8I	GCNNGC	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	48, 241, 339
Cfr42I	CCGCGG	1 cut(s)	32
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	6 cut(s)	25, 211, 243, 256, 266, 341
CviKI_1	RGCY	6 cut(s)	25, 211, 243, 256, 266, 341
DdeI	CTNAG	2 cut(s)	182, 212
DpnI	GATC	7 cut(s)	5, 15, 138, 207, 300, 358, 369
DpnII	GATC	7 cut(s)	3, 13, 136, 205, 298, 356, 367
Eco32I	GATATC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	243, 341
EcoRV	GATATC	1 cut(s)	59
FaeI	CATG	1 cut(s)	376
FaiI	YATR	6 cut(s)	250, 335, 374, 383, 407, 468
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	372
FbaI	TGATCA	3 cut(s)	3, 136, 205
Fnu4HI	GCNGC	3 cut(s)	26, 29, 162
FokI	GGATG	3 cut(s)	92, 200, 398
Fsp4HI	GCNGC	3 cut(s)	26, 29, 162
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	3 cut(s)	26, 29, 162
HaeIII	GGCC	2 cut(s)	243, 341
Hin1II	CATG	1 cut(s)	376
HinfI	GANTC	1 cut(s)	231
HphI	GGTGA	2 cut(s)	95, 434
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	274, 316, 439
Hpy188III	TCNNGA	4 cut(s)	11, 17, 128, 445
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	2 cut(s)	48, 331
HpyCH4V	TGCA	4 cut(s)	38, 92, 191, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 217, 292
HpyF3I	CTNAG	2 cut(s)	182, 212
Hsp92II	CATG	1 cut(s)	376
Ksp22I	TGATCA	3 cut(s)	3, 136, 205
KspI	CCGCGG	1 cut(s)	32
Kzo9I	GATC	7 cut(s)	3, 13, 136, 205, 298, 356, 367
LmnI	GCTCC	1 cut(s)	263
Lsp1109I	GCAGC	2 cut(s)	12, 148
LweI	GCATC	2 cut(s)	178, 189
MaeI	CTAG	1 cut(s)	296
MalI	GATC	7 cut(s)	5, 15, 138, 207, 300, 358, 369
MboI	GATC	7 cut(s)	3, 13, 136, 205, 298, 356, 367
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	2 cut(s)	131, 281
MnlI	CCTC	2 cut(s)	115, 418
MseI	TTAA	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	31
MspR9I	CCNGG	2 cut(s)	245, 343
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	245, 343
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	208, 217, 292
NdeII	GATC	7 cut(s)	3, 13, 136, 205, 298, 356, 367
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	1 cut(s)	50
PctI	GAATGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	27, 30, 163
PsiI	TTATAA	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	243, 341
PspGI	CCWGG	2 cut(s)	243, 341
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	3 cut(s)	48, 241, 339
PsuI	RGATCY	1 cut(s)	298
SacII	CCGCGG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	3 cut(s)	26, 29, 162
Sau3AI	GATC	7 cut(s)	3, 13, 136, 205, 298, 356, 367
Sau96I	GGNCC	3 cut(s)	48, 241, 339
ScrFI	CCNGG	2 cut(s)	245, 343
SetI	ASST	7 cut(s)	27, 144, 213, 258, 268, 433, 473
SfaNI	GCATC	2 cut(s)	178, 189
Sfr303I	CCGCGG	1 cut(s)	32
SgrBI	CCGCGG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	48
Sse9I	AATT	2 cut(s)	131, 281
SsiI	CCGC	2 cut(s)	29, 31
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	243, 341
TaaI	ACNGT	2 cut(s)	48, 331
TasI	AATT	2 cut(s)	131, 281
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	2 cut(s)	25, 161
TspDTI	ATGAA	2 cut(s)	145, 294
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	131
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.