Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8458339.1

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 657

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8458339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 656 bp

atgatggatgggcggcgtcattctgttgatatacctatctctaaagctctggtggctctgcggagggtgaggtctctaagggatccatcaactaattctatgaccaaattctcttctccggttgagaatgttaactgggaaacgaattcgggtaatgatatctctatgctattcttgaatactttccaagaaggtggttctgacaaccgtagttgtttgaggccaaggaattcggatttgtacggacaaagagaggattgcttagatgattttgaactaaacttgggtttagaaaagtctagattgatcctgcctgagaattcagagtgggttggaagcacagggaatcagggtgatgagtttgatctttcagggtcagataaggaagaggtttttagaaataaatcactgagtcagagatataagagcagtcatatggataaaggattggccatgacatgcgtcaagcctttggaggatgtggattatgaagaagccgtcagatcatcatgtttagaaagagtagatcagattgcatcaaaacgaaaatcacactgtaaaaatcgtgttgatttgtctggggcaattggtgatcgtaggagtcgaactggcagtccatgcccttcagcaggtgatgctctttcaagccatggtac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

219

Amino Acids

24.4

Weight (kDa)

5.87

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	620
AciI	CCGC	2 cut(s)	13, 61
AclWI	GGATC	3 cut(s)	77, 90, 301
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	4 cut(s)	107, 145, 229, 319
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	16
AfaI	GTAC	2 cut(s)	242, 655
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	3 cut(s)	178, 275, 645
AloI	GAACNNNNNNTCC	2 cut(s)	598, 630
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	3 cut(s)	77, 90, 301
AoxI	GGCC	2 cut(s)	221, 450
ApoI	RAATTY	4 cut(s)	107, 145, 229, 319
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
Asp700I	GAANNNNTTC	1 cut(s)	182
AsuHPI	GGTGA	4 cut(s)	79, 365, 602, 644
BalI	TGGCCA	1 cut(s)	452
BamHI	GGATCC	1 cut(s)	82
BccI	CCATC	2 cut(s)	2, 94
BceAI	ACGGC	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	620
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	145
BmsI	GCATC	2 cut(s)	545, 625
BmuI	ACTGGG	1 cut(s)	145
BoxI	GACNNNNGTC	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	224, 649
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	140, 613
BseDI	CCNNGG	2 cut(s)	224, 649
BseGI	GGATG	2 cut(s)	13, 484
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMII	CTCAG	2 cut(s)	306, 401
BseNI	ACTGG	2 cut(s)	140, 613
BshFI	GGCC	2 cut(s)	223, 452
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	223, 452
Bso31I	GGTCTC	1 cut(s)	78
Bsp143I	GATC	6 cut(s)	82, 306, 364, 503, 526, 592
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	2 cut(s)	13, 61
BspANI	GGCC	2 cut(s)	223, 452
BspCNI	CTCAG	2 cut(s)	307, 402
BspLI	GGNNCC	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	3 cut(s)	77, 90, 301
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	140, 613
BssECI	CCNNGG	2 cut(s)	224, 649
BssMI	GATC	6 cut(s)	82, 306, 364, 503, 526, 592
BssNI	GRCGYC	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	224, 649
Bst4CI	ACNGT	2 cut(s)	209, 557
Bst6I	CTCTTC	2 cut(s)	118, 381
BstACI	GRCGYC	1 cut(s)	16
BstAPI	GCANNNNNTGC	2 cut(s)	618, 635
BstDEI	CTNAG	4 cut(s)	77, 262, 315, 410
BstDSI	CCRYGG	1 cut(s)	649
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	2 cut(s)	13, 484
BstKTI	GATC	6 cut(s)	85, 309, 367, 506, 529, 595
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	6 cut(s)	82, 306, 364, 503, 526, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 618, 635
BstNSI	RCATGY	1 cut(s)	462
BstPAI	GACNNNNGTC	1 cut(s)	461
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	223, 452
BtgI	CCRYGG	1 cut(s)	649
BtsCI	GGATG	2 cut(s)	13, 484
BtsIMutI	CAGTG	2 cut(s)	407, 553
BveI	ACCTGC	1 cut(s)	620
CseI	GACGC	2 cut(s)	5, 451
Csp6I	GTAC	2 cut(s)	241, 654
CviAII	CATG	5 cut(s)	454, 459, 510, 618, 650
CviJI	RGCY	7 cut(s)	47, 56, 223, 452, 469, 497, 648
CviKI_1	RGCY	7 cut(s)	47, 56, 223, 452, 469, 497, 648
CviQI	GTAC	2 cut(s)	241, 654
DdeI	CTNAG	4 cut(s)	77, 262, 315, 410
DpnI	GATC	6 cut(s)	84, 308, 366, 505, 528, 594
DpnII	GATC	6 cut(s)	82, 306, 364, 503, 526, 592
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	2 cut(s)	118, 381
EarI	CTCTTC	2 cut(s)	118, 381
Eco130I	CCWWGG	2 cut(s)	224, 649
Eco31I	GGTCTC	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	609
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoRI	GAATTC	3 cut(s)	145, 229, 319
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	224, 649
ErhI	CCWWGG	2 cut(s)	224, 649
FaeI	CATG	5 cut(s)	457, 462, 513, 621, 653
FatI	CATG	5 cut(s)	453, 458, 509, 617, 649
FauNDI	CATATG	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	2 cut(s)	20, 491
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	223, 452
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	2 cut(s)	5, 451
Hin1I	GRCGYC	1 cut(s)	16
Hin1II	CATG	5 cut(s)	457, 462, 513, 621, 653
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	346, 412, 601
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	4 cut(s)	79, 365, 602, 644
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	7 cut(s)	202, 235, 325, 379, 417, 503, 531
Hpy188III	TCNNGA	2 cut(s)	175, 300
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	185, 633
HpyCH4III	ACNGT	2 cut(s)	209, 557
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 618, 635
HpyF3I	CTNAG	4 cut(s)	77, 262, 315, 410
Hsp92I	GRCGYC	1 cut(s)	16
Hsp92II	CATG	5 cut(s)	457, 462, 513, 621, 653
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	6 cut(s)	82, 306, 364, 503, 526, 592
LweI	GCATC	2 cut(s)	545, 625
MaeI	CTAG	1 cut(s)	300
MalI	GATC	6 cut(s)	84, 308, 366, 505, 528, 594
MboI	GATC	6 cut(s)	82, 306, 364, 503, 526, 592
MboII	GAAGA	3 cut(s)	105, 398, 503
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	6 cut(s)	94, 107, 145, 229, 319, 585
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	2 cut(s)	421, 610
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	6 cut(s)	57, 63, 213, 247, 382, 469
Mox20I	TGGCCA	1 cut(s)	452
MroXI	GAANNNNTTC	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	452
MspI	CCGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	53, 618, 635
NcoI	CCATGG	1 cut(s)	649
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	6 cut(s)	82, 306, 364, 503, 526, 592
NlaIII	CATG	5 cut(s)	457, 462, 513, 621, 653
NlaIV	GGNNCC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	462
PaqCI	CACCTGC	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	2 cut(s)	420, 609
PpsI	GAGTC	2 cut(s)	420, 609
PshAI	GACNNNNGTC	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	2 cut(s)	242, 655
RsaNI	GTAC	2 cut(s)	241, 654
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	6 cut(s)	82, 306, 364, 503, 526, 592
SchI	GAGTC	2 cut(s)	421, 610
SetI	ASST	6 cut(s)	37, 49, 74, 196, 393, 634
SfaNI	GCATC	2 cut(s)	545, 625
Sse9I	AATT	6 cut(s)	94, 107, 145, 229, 319, 585
SsiI	CCGC	2 cut(s)	13, 61
SspMI	CTAG	1 cut(s)	300
StyI	CCWWGG	2 cut(s)	224, 649
TaaI	ACNGT	2 cut(s)	209, 557
TaqI	TCGA	1 cut(s)	604
TasI	AATT	6 cut(s)	94, 107, 145, 229, 319, 585
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	414, 560
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	414, 560
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	4 cut(s)	107, 145, 229, 319
XbaI	TCTAGA	1 cut(s)	299
XceI	RCATGY	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.