Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Forward (+)

57492650 .. 57493165

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGACTTCCAGAAACTGAGTCATGCATTGAAAATATTCTCTGAAACTGAGAAGCAGTTAAGGGTATCCAAGAATCAAACAACATGGCTTACTGCAGCTCTATTGCAGCTAAGCTCTGCAGAATCCTCCTCCTCATTGGATGCTAGTGATACAAAGAGTTTGAGAAATACACAAAGAGAGAGAGGGCAGAGCTTCAAGAATCTTGACCCTACTTCATGCAATGTCAACACATCAGACAAGTTGGGAATGCAGAAGGACATTGATGAACAGTTGGAATCCATATGGAAGAGAGCTATAGATTTATGCCAATCCAGGTCATTCAAGAACTTTTTGAGGAAACAAGGAAGATTGTCGTCTCTATTTGTGAATCAAGGTACTTCCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

128

Amino Acids

14.51

Weight (kDa)

9.47

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaA_N-like_STI	PF23007	84 - 126	1.3e-11	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	376
AgsI	TTSAA	3 cut(s)	31, 196, 322
AjnI	CCWGG	1 cut(s)	311
AluBI	AGCT	5 cut(s)	98, 109, 114, 192, 293
AluI	AGCT	5 cut(s)	98, 109, 114, 192, 293
Alw26I	GTCTC	1 cut(s)	360
AlwNI	CAGNNNCTG	1 cut(s)	16
ApeKI	GCWGC	2 cut(s)	95, 106
Asp700I	GAANNNNTTC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	107, 118
BciT130I	CCWGG	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	2 cut(s)	144, 385
BfmI	CTRYAG	3 cut(s)	93, 117, 294
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	96, 107
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	2 cut(s)	97, 108
Bme1390I	CCNGG	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	8, 39
BseRI	GAGGAG	2 cut(s)	118, 121
BseXI	GCAGC	2 cut(s)	107, 118
BsmAI	GTCTC	1 cut(s)	360
BsmBI	CGTCTC	1 cut(s)	360
BsmI	GAATGC	1 cut(s)	252
Bsp1720I	GCTNAGC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	9, 40
BspMAI	CTGCAG	2 cut(s)	97, 121
BsrDI	GCAATG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	281
BstDEI	CTNAG	3 cut(s)	17, 48, 110
BstF5I	GGATG	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	360
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	3 cut(s)	93, 117, 294
BstV1I	GCAGC	2 cut(s)	107, 118
BsuI	GTATCC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	3 cut(s)	23, 84, 216
CviJI	RGCY	6 cut(s)	88, 98, 109, 114, 192, 293
CviKI_1	RGCY	6 cut(s)	88, 98, 109, 114, 192, 293
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	3 cut(s)	17, 48, 110
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	360
FaeI	CATG	3 cut(s)	26, 87, 219
FaiI	YATR	7 cut(s)	24, 85, 217, 281, 283, 296, 304
FatI	CATG	3 cut(s)	22, 83, 215
FauNDI	CATATG	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	96, 107
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	96, 107
FspBI	CTAG	2 cut(s)	144, 385
GluI	GCNGC	2 cut(s)	96, 107
Hin1II	CATG	3 cut(s)	26, 87, 219
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	6 cut(s)	19, 73, 122, 199, 275, 367
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	43, 235
Hpy188III	TCNNGA	4 cut(s)	10, 196, 203, 322
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	26, 95, 106, 119, 219, 250
HpyF3I	CTNAG	3 cut(s)	17, 48, 110
Hsp92II	CATG	3 cut(s)	26, 87, 219
LpnPI	CCDG	3 cut(s)	23, 298, 325
Lsp1109I	GCAGC	2 cut(s)	107, 118
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	144, 385
MboII	GAAGA	2 cut(s)	298, 357
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	136, 139, 142, 176, 327
Mph1103I	ATGCAT	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	281
NlaIII	CATG	3 cut(s)	26, 87, 219
NsiI	ATGCAT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	5 cut(s)	73, 122, 199, 275, 367
PkrI	GCNGC	2 cut(s)	97, 108
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PstI	CTGCAG	2 cut(s)	97, 121
PstNI	CAGNNNCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	2 cut(s)	96, 107
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	8 cut(s)	100, 111, 116, 194, 295, 317, 376, 386
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	3 cut(s)	93, 117, 294
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	2 cut(s)	144, 385
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	270
TfiI	GAWTC	5 cut(s)	73, 122, 199, 275, 367
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TseI	GCWGC	2 cut(s)	95, 106
TspDTI	ATGAA	2 cut(s)	204, 279
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	144, 385
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.