Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

57919228 .. 57920375

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG412100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAATATCAAAATGGGCTTGGCATACGAGCTTATTGGAGCTGTTTCTGATGATGAATTACTCGATTTGCTAGATCTGGCATTGTCATCTGACACTTCTAATACAGTCTTAAGGGCCAGGGAGTTGATGAGATCAAGGATTGATCCGATGCAACTTATATCGCAGTTGGCAAATCTTATTATGGACATCCTTGCTGGTGAGGAATGTGGTTCTGAAGTCCAGAAACAGTTCTCTCGTAGGTATACCTCTGAAATGGACCCCCAGAAACTGACTCTATTGCAGCTAAGCTCTGCAGAATCCTCCTCCTCATTGGATGCTAGTGATACAAAGAGTATGAGAAACACACGAGAGAGGGCAGAGCCTCAAGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

134

Amino Acids

14.9

Weight (kDa)

4.5

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	264
AflII	CTTAAG	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	5 cut(s)	16, 61, 71, 313, 318
AluI	AGCT	5 cut(s)	16, 61, 71, 313, 318
AlwI	GGATC	1 cut(s)	167
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	310
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	144, 286
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	10
BfaI	CTAG	2 cut(s)	101, 348
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	139
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	1 cut(s)	311
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	144, 286
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	168, 334
Bpu1102I	GCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	2 cut(s)	216, 349
BseRI	GAGGAG	2 cut(s)	322, 325
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	4 cut(s)	10, 103, 161, 172
Bsp1720I	GCTNAGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	4 cut(s)	10, 103, 161, 172
BssNAI	GTATAC	1 cut(s)	273
BssSI	CACGAG	1 cut(s)	375
Bst1107I	GTATAC	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	136, 258
BstAFI	CTTAAG	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	17, 314
BstF5I	GGATG	2 cut(s)	216, 349
BstKTI	GATC	4 cut(s)	13, 106, 164, 175
BstMBI	GATC	4 cut(s)	10, 103, 161, 172
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 22
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BstZ17I	GTATAC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	216, 349
CaiI	CAGNNNCTG	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	144, 286
CviJI	RGCY	8 cut(s)	16, 48, 61, 71, 146, 313, 318, 391
CviKI_1	RGCY	8 cut(s)	16, 48, 61, 71, 146, 313, 318, 391
DdeI	CTNAG	2 cut(s)	17, 314
DpnI	GATC	4 cut(s)	12, 105, 163, 174
DpnII	GATC	4 cut(s)	10, 103, 161, 172
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	146
FaiI	YATR	5 cut(s)	55, 188, 212, 273, 365
FbaI	TGATCA	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	2 cut(s)	203, 356
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	2 cut(s)	101, 348
GluI	GCNGC	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	146
HinfI	GANTC	3 cut(s)	301, 326, 398
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	5 cut(s)	79, 121, 177, 244, 280
Hpy188III	TCNNGA	3 cut(s)	250, 395, 402
Hpy8I	GTNNAC	1 cut(s)	273
HpyCH4III	ACNGT	2 cut(s)	136, 258
HpyCH4V	TGCA	3 cut(s)	181, 310, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 22
HpyF3I	CTNAG	2 cut(s)	17, 314
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	10, 103, 161, 172
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	6 cut(s)	92, 133, 160, 210, 263, 305
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	168, 334
MaeI	CTAG	2 cut(s)	101, 348
MalI	GATC	4 cut(s)	12, 105, 163, 174
MboI	GATC	4 cut(s)	10, 103, 161, 172
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	7 cut(s)	223, 286, 340, 343, 346, 375, 402
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	13, 22
NdeII	GATC	4 cut(s)	10, 103, 161, 172
NlaIV	GGNNCC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	326, 398
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	144, 286
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	4 cut(s)	10, 103, 161, 172
Sau96I	GGNCC	2 cut(s)	144, 286
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	148
SetI	ASST	7 cut(s)	18, 63, 73, 272, 278, 315, 320
SfaNI	GCATC	2 cut(s)	168, 334
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	286
SmlI	CTYRAG	2 cut(s)	139, 393
SmoI	CTYRAG	2 cut(s)	139, 393
Sse9I	AATT	1 cut(s)	86
SspMI	CTAG	2 cut(s)	101, 348
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	2 cut(s)	136, 258
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	326, 398
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	99
Vha464I	CTTAAG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	286
XmiI	GTMKAC	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	101, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.