Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

25443494 .. 25443883

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0269600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCAATTCGCTCCACAACCAACGAATCAGGTCTCCCAGTCGGGGTCAGGTTCCATCCCACAGACCATGAACTCCTCGATTACTATCTCCACACCAGGATTGCCATGGGTGACCACTTTCACTCCGATTTCGTCGCTGATTGTCCTCATTTTTACGGAGACAATGAGCCCTGGGTTGTCTGGCAAATCTACGGCGGCGGTGAGTCCAAGAAAGTGGAGGATGAAAAGACTCTCTATTTCTTCACCCATCGGAGAAGGCTGAGTCCCACCACCAAGCGATTTGATCGGAAAGTGGGTTCCGGCACTTGGAGCGGTCAGTATTCGAGAGAAGTTGTTGACCAGGAGGATGATGGTGTTGTTATTGGGCTCAAGAGGGAGTTCCGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

129

Amino Acids

15.07

Weight (kDa)

6.14

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	13 - 129	8.1e-20	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	312
AciI	CCGC	3 cut(s)	195, 198, 312
AfiI	CCNNNNNNNGG	2 cut(s)	43, 306
AjnI	CCWGG	3 cut(s)	95, 170, 339
AloI	GAACNNNNNNTCC	2 cut(s)	280, 312
Alw26I	GTCTC	2 cut(s)	38, 153
AsuHPI	GGTGA	3 cut(s)	122, 212, 235
BanII	GRGCYC	2 cut(s)	171, 369
BccI	CCATC	3 cut(s)	63, 255, 344
BceAI	ACGGC	1 cut(s)	208
BciT130I	CCWGG	3 cut(s)	97, 172, 341
BcoDI	GTCTC	2 cut(s)	38, 153
BfaI	CTAG	1 cut(s)	388
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	3 cut(s)	97, 172, 341
BmiI	GGNNCC	2 cut(s)	53, 298
BmrFI	CCNGG	3 cut(s)	97, 172, 341
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	105, 170, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 306
Bse1I	ACTGG	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	3 cut(s)	97, 172, 341
BseDI	CCNNGG	3 cut(s)	105, 170, 171
BseGI	GGATG	3 cut(s)	55, 226, 352
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	43, 306
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	43, 306
BsmAI	GTCTC	2 cut(s)	38, 153
BsmFI	GGGAC	1 cut(s)	249
Bso31I	GGTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	171, 369
Bsp143I	GATC	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	3 cut(s)	195, 198, 312
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	53, 298
BspTNI	GGTCTC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	3 cut(s)	105, 170, 171
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	3 cut(s)	97, 172, 341
BstDEI	CTNAG	1 cut(s)	260
BstDSI	CCRYGG	1 cut(s)	105
BstEII	GGTNACC	1 cut(s)	110
BstF5I	GGATG	3 cut(s)	55, 226, 352
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	2 cut(s)	38, 153
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNI	CCWGG	3 cut(s)	97, 172, 341
BstPI	GGTNACC	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	95, 170, 339
BstXI	CCANNNNNNTGG	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	55, 226, 352
CviAII	CATG	2 cut(s)	68, 106
CviJI	RGCY	3 cut(s)	169, 259, 367
CviKI_1	RGCY	3 cut(s)	169, 259, 367
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	2 cut(s)	171, 369
Eco31I	GGTCTC	1 cut(s)	38
Eco91I	GGTNACC	1 cut(s)	110
EcoO65I	GGTNACC	1 cut(s)	110
EcoRII	CCWGG	3 cut(s)	95, 170, 339
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	171, 369
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	71, 109
FaiI	YATR	2 cut(s)	69, 107
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	2 cut(s)	67, 105
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	3 cut(s)	42, 233, 359
FriOI	GRGCYC	2 cut(s)	171, 369
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	388
GluI	GCNGC	1 cut(s)	196
HapII	CCGG	1 cut(s)	300
Hin1II	CATG	2 cut(s)	71, 109
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HinfI	GANTC	4 cut(s)	26, 203, 229, 262
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	3 cut(s)	122, 212, 235
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	127, 252, 288, 383
Hpy188III	TCNNGA	2 cut(s)	324, 370
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	71, 109
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	2 cut(s)	17, 309
MaeI	CTAG	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	285
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	232
MhlI	GDGCHC	2 cut(s)	171, 369
MluCI	AATT	1 cut(s)	6
MlyI	GAGTC	3 cut(s)	212, 223, 271
MnlI	CCTC	5 cut(s)	86, 156, 211, 337, 366
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	3 cut(s)	97, 172, 341
MvaI	CCWGG	3 cut(s)	97, 172, 341
MwoI	GCNNNNNNNGC	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	71, 109
NlaIV	GGNNCC	2 cut(s)	53, 298
NmuCI	GTSAC	1 cut(s)	110
PasI	CCCWGGG	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	197
PleI	GAGTC	3 cut(s)	211, 223, 270
PpsI	GAGTC	3 cut(s)	211, 223, 270
Psp6I	CCWGG	3 cut(s)	95, 170, 339
PspEI	GGTNACC	1 cut(s)	110
PspGI	CCWGG	3 cut(s)	95, 170, 339
PspN4I	GGNNCC	2 cut(s)	53, 298
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	3 cut(s)	212, 223, 271
ScrFI	CCNGG	3 cut(s)	97, 172, 341
SduI	GDGCHC	2 cut(s)	171, 369
SetI	ASST	2 cut(s)	34, 53
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	3 cut(s)	195, 198, 312
SspMI	CTAG	1 cut(s)	388
StyD4I	CCNGG	3 cut(s)	95, 170, 339
StyI	CCWWGG	1 cut(s)	105
TaqI	TCGA	2 cut(s)	78, 323
TasI	AATT	1 cut(s)	6
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	84, 237
TspGWI	ACGGA	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	2 cut(s)	103, 347
XspI	CTAG	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.