Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Forward (+)

15540692 .. 15544991

Gene Structure 4300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2754 bp

ATGATGGATGGGTGGCGTCATTCTTTGATATACCTATCTCCGAAAGCTCTTTTGGTTCTGCCGAGGGTGAGGTCTCTAAGGGATCCATTAACTAATTCTATGAGCAAATTCTCTTCTCCGGTTGAGAATGTTAATTGGGAAACGAATTCAGGTAATGATATCTCTATGCTATTCTTGAATACTTTCCAAGAAGGTGGTTCTGACAATCGTAGTTGTTTGAGGCCAAAGAATTCGGATTTGTATGGACAAATAGAGGAGTGCTTTGATGATTTTGAACTAAACTTGGGTTTAGAAAAGTCTAGGTTGATCCTGCATGAGAATTCAGAGTGGGTTGGAAGCTCAGGGAGTCCTAGGAGCAATCGGGGTGAAAAATTTGATTTTTCAGGGTCAGATAAGGAAGAGGTTTTTAGAAATAAATCACCGATTCAGAGATATAAGAGCAATCATATGGATAAAGGATTGGCCTTGACATGTGTTAAGCCTTTGAGGATGTGGATTATGAAGAAACTATTGCATCAAAATGAAAATCAGTGTAAAAATCGCGTTGAAGTGTCTGGGGCAATTGGTGATTGTAGGAGTCGAACTGGCAGTCCATACCCTTCAGCAGGTGATGCTATTTCAAGCCATGATCATGATCATCCTGGTGGTGGAGTAAGCTGCTGGTGGTCAAGAACCCCTAGATTCAGAGAAAATTTAGATGATATTTCACTTTATGACCACAGAAGCTTGAAACGCATAGGAAATGAAACCAGTTCACAGTTAGAAAAGCCCAGGAGTCTGAGTCAGAAATTCAGGCCAAAGTCTTTCATCGACATGGTGAGGAAAAATGTTGTTGCGAGGTCTCTTTTGGGTGCTGTCTCTAGAGGAAGAATAACCTCATTCTATCTTTTCCATGGTCCACAAGGTACAGGAAAGACATCAGCCTCAAGAATTTTTGCTGCAGCACTTAATTGTCTTTCACTGGAGGAGTACAGGCCGTGTGGTCTCTTCTGCAAGTGTAATGTGTACTTTTCTGGAAACAGCAGAGATATTAAGGAAATAGATTCTGTGAGAATCAACTGGAGAGACCGGTTTAGGTGTCTTATTATGAATGCAGCTACACCTCCCGTTTCTTCATGGTTTAAGGTTTTCATCATTGATGAGTGCCACTTGATGCGTGGGGAAACATGGGCGACTATTTTGAGTAGCACCGATAACCTTTCTCAACATGTTGTCTTTAGATATCACTTCCCAAAGATTAAGGATGGTGATATTGCAAGCAAGTTGGGAAAAATCTGTGTTGAAGAGGGTCTTGAGTTTGATCAGGTTGCTTTAAACTTCATTGCTGCCAAATCAAATGGTTCACTTAGGGATGCAGAGATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAATATCACAATGGGCTTGGCATACGAGCTTATTGGAGCTGTTTCTGATGATGAATTACTCGATTTGCTAGATCTGGCATTGTCATCCGACACTTTTAATACAGTTTTAAGGGCCAGGGAGTTGATGAGATCAGGGATTGATCTGATGCAACTTATATCGCAGTTGGCAAATCTTATTATGGACATCCTTGCTGGTGAGGAAGGTGGTTCTGAAGTCCAGAAACAGTTCTCTCGTAGGCATACCTGTAAGGTATCCAAGAATCAAACAACATGGCTTACTGCAGCTCTATTGCAGCTAAGCTCTGCAGAATCCTCCTCCTCATTGGATGCTAGTGATACAAAGAGTATGAGAAACACACAAGAGAGAGGGCAGAGCCTCAAGATTCTTGACCCTACTTCATGCAATGTCAACACATCAGACAAGTTGGGAATGCAAAAGGATATTGATGAACAGTTGGATTCCGTATGGAAGAGAGCTATAGATTTATGCCAATCCAAGTCATTCAAGAACTTTTTGAGGAAACAAGGAAGATTGTCATCTCTATTTGTGAATCAAGGTCTCGCTATAGCTGAATTGGAATTCTGCCACCCTGATTATGCATCCAAGGCTGAGAAGTCATGGAAAATCATTGCAAGTGCACTCCAATCTCTATTCGGTTGTAATGTGGAGATCAGGATCAATCTTGTACGTGCTACTGAGTCAAAGTATGCAAACGTGAAGAAGCCATCTCTTAGGTTGTTCAGCTGTTCCCGCAGAATGCAGCAAAAGTCACCATCTTTCTGTGAGCGTGGAAGTGGTTCAGACTACTCTGAGTACACATCGGAAAAGCCTATATTAAGTGATGGACGTATTTTACCGCGTTCCTGTGATTGTGCTTCTCAACTGCCACATAACTGCTGTGACGAAATGGTGGTTGTAAGTACATTGAGAAATAGTGAAGTTAACGCACCTGGATTAATGTTTGATTCTTCAAAGGAAGAGGGAAGCAACCAGGACTGCCAGGTTTTATCTTTTCATCAACCTGAACATCAACCAAGGTGTTTCCCGAGAACTCTGAGGATTCAAAAGAAGTTTTGTTCCACAGATGCTACTCAGGTGACTTGTTGTACCAAACTACAAAACAAGTTTGCAATCCCAACTAGGACATCTTTTGACGCCTGTCTTTTGGGAAGCAATTCATATGCTTTCTGCAGCGGCTCTGACAATGGGAACAATGCCGGCAACTATAAGGAAGAGTTGAAGGAAAATTCAGGTGTGCTTTGTTGGAAAACCCTGCTTCCCTCAAGAAAGGATTGGCAGCTGAGGCAAGAACAGCAAAATTCGAAACTAGTTGGGTGGGTTCTTCCATGTGCAACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

918

Amino Acids

103.06

Weight (kDa)

8.55

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol3_delta2	PF13177	279 - 394	2e-10	DNA polymerase III, delta subunit
DNAX_ATPase_lid	PF22608	418 - 458	1.8e-07	DNA polymerase III clamp loader subunit, ATPase lid domain
RCF1-5-like_lid	PF21960	421 - 457	6.1e-06	RCF1/5-like, AAA+ ATPase lid domain
DnaA_N-like_STI	PF23007	609 - 692	1.7e-30	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	596
AccII	CGCG	2 cut(s)	543, 2251
AciI	CCGC	3 cut(s)	2143, 2249, 2586
AclWI	GGATC	4 cut(s)	77, 90, 301, 2075
AcuI	CTGAAG	2 cut(s)	585, 1623
AcyI	GRCGYC	2 cut(s)	16, 2547
AfaI	GTAC	7 cut(s)	907, 971, 1007, 2079, 2207, 2314, 2500
AfiI	CCNNNNNNNGG	2 cut(s)	605, 647
AflIII	ACRYGT	2 cut(s)	470, 1207
AgeI	ACCGGT	1 cut(s)	1068
AhlI	ACTAGT	1 cut(s)	2719
AjnI	CCWGG	6 cut(s)	640, 770, 1505, 2341, 2382, 2391
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AloI	GAACNNNNNNTCC	2 cut(s)	574, 606
Alw21I	GWGCWC	1 cut(s)	2032
Alw26I	GTCTC	6 cut(s)	78, 846, 862, 989, 1059, 1955
Alw44I	GTGCAC	1 cut(s)	2028
AlwI	GGATC	4 cut(s)	77, 90, 301, 2075
Ama87I	CYCGRG	1 cut(s)	2437
AoxI	GGCC	5 cut(s)	221, 462, 794, 974, 1503
ApaLI	GTGCAC	1 cut(s)	2028
ArsI	GACNNNNNNTTYG	2 cut(s)	574, 606
AseI	ATTAAT	1 cut(s)	2348
AsiGI	ACCGGT	1 cut(s)	1068
Asp700I	GAANNNNTTC	4 cut(s)	182, 1616, 2188, 2566
AspA2I	CCTAGG	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	896, 1503
AsuII	TTCGAA	1 cut(s)	2714
AvaI	CYCGRG	1 cut(s)	2437
AvaII	GGWCC	1 cut(s)	896
AvrII	CCTAGG	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	2032
BamHI	GGATCC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	2032
BbvCI	CCTCAGC	1 cut(s)	2693
BccI	CCATC	5 cut(s)	2, 1238, 2125, 2173, 2228
BceAI	ACGGC	1 cut(s)	961
BciT130I	CCWGG	6 cut(s)	642, 772, 1507, 2343, 2384, 2393
BciVI	GTATCC	1 cut(s)	1654
BclI	TGATCA	4 cut(s)	628, 634, 1300, 1369
BcoDI	GTCTC	6 cut(s)	78, 846, 862, 989, 1059, 1955
BcuI	ACTAGT	1 cut(s)	2719
BfaI	CTAG	8 cut(s)	300, 351, 678, 861, 1460, 1722, 2532, 2720
BfmI	CTRYAG	6 cut(s)	939, 1671, 1695, 1869, 1956, 2581
BfuAI	ACCTGC	1 cut(s)	596
BfuI	GTATCC	1 cut(s)	1654
BglII	AGATCT	1 cut(s)	1462
BlnI	CCTAGG	1 cut(s)	350
BlpI	GCTNAGC	1 cut(s)	1688
Bme1390I	CCNGG	6 cut(s)	642, 772, 1507, 2343, 2384, 2393
Bme18I	GGWCC	1 cut(s)	896
BmeT110I	CYCGRG	1 cut(s)	2437
BmgT120I	GGNCC	2 cut(s)	896, 1503
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	6 cut(s)	642, 772, 1507, 2343, 2384, 2393
BmsI	GCATC	9 cut(s)	523, 601, 1143, 1342, 1353, 1527, 1708, 2000, 2467
BoxI	GACNNNNGTC	1 cut(s)	2550
BpmI	CTGGAG	2 cut(s)	983, 1081
Bpu10I	CCTNAGC	2 cut(s)	340, 2693
Bpu1102I	GCTNAGC	1 cut(s)	1688
Bpu14I	TTCGAA	1 cut(s)	2714
BpuEI	CTTGAG	4 cut(s)	910, 1313, 1754, 2659
BsaAI	YACGTR	1 cut(s)	2081
BsaBI	GATNNNNATC	3 cut(s)	633, 1927, 2066
BsaHI	GRCGYC	2 cut(s)	16, 2547
BsaI	GGTCTC	5 cut(s)	78, 846, 989, 1059, 1955
BsaJI	CCNNGG	7 cut(s)	62, 350, 770, 892, 1506, 1995, 2426
BsaWI	WCCGGW	2 cut(s)	118, 1068
BsaXI	ACNNNNNCTCC	2 cut(s)	766, 796
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 647
Bse118I	RCCGGY	2 cut(s)	1068, 2609
Bse1I	ACTGG	4 cut(s)	589, 750, 966, 1064
Bse3DI	GCAATG	3 cut(s)	1320, 1801, 2019
Bse8I	GATNNNNATC	3 cut(s)	633, 1927, 2066
BseBI	CCWGG	6 cut(s)	642, 772, 1507, 2343, 2384, 2393
BseDI	CCNNGG	7 cut(s)	62, 350, 770, 892, 1506, 1995, 2426
BseGI	GGATG	9 cut(s)	13, 495, 637, 1249, 1357, 1475, 1575, 1723, 1991
BseJI	GATNNNNATC	3 cut(s)	633, 1927, 2066
BseLI	CCNNNNNNNGG	2 cut(s)	605, 647
BseMI	GCAATG	3 cut(s)	1320, 1801, 2019
BseMII	CTCAG	8 cut(s)	354, 770, 1992, 2079, 2193, 2438, 2498, 2684
BseNI	ACTGG	4 cut(s)	589, 750, 966, 1064
BseRI	GAGGAG	4 cut(s)	269, 980, 1696, 1699
BseSI	GKGCMC	1 cut(s)	2032
Bsh1236I	CGCG	2 cut(s)	543, 2251
BshFI	GGCC	5 cut(s)	223, 464, 796, 976, 1505
BshTI	ACCGGT	1 cut(s)	1068
BsiHKAI	GWGCWC	1 cut(s)	2032
BsiHKCI	CYCGRG	1 cut(s)	2437
BsiSI	CCGG	3 cut(s)	119, 1069, 2610
BslI	CCNNNNNNNGG	2 cut(s)	605, 647
BsmAI	GTCTC	6 cut(s)	78, 846, 862, 989, 1059, 1955
BsmI	GAATGC	3 cut(s)	1096, 1827, 2154
BsnI	GGCC	5 cut(s)	223, 464, 796, 976, 1505
Bso31I	GGTCTC	5 cut(s)	78, 846, 989, 1059, 1955
BsoBI	CYCGRG	1 cut(s)	2437
Bsp119I	TTCGAA	1 cut(s)	2714
Bsp1286I	GDGCHC	1 cut(s)	2032
Bsp1720I	GCTNAGC	1 cut(s)	1688
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	3 cut(s)	2143, 2249, 2586
BspANI	GGCC	5 cut(s)	223, 464, 796, 976, 1505
BspCNI	CTCAG	8 cut(s)	353, 771, 1993, 2080, 2194, 2439, 2497, 2685
BspFNI	CGCG	2 cut(s)	543, 2251
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	4 cut(s)	943, 1675, 1699, 2585
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	4 cut(s)	77, 90, 301, 2075
BspT104I	TTCGAA	1 cut(s)	2714
BspTNI	GGTCTC	5 cut(s)	78, 846, 989, 1059, 1955
BsrDI	GCAATG	3 cut(s)	1320, 1801, 2019
BsrFI	RCCGGY	2 cut(s)	1068, 2609
BsrI	ACTGG	4 cut(s)	589, 750, 966, 1064
BssAI	RCCGGY	2 cut(s)	1068, 2609
BssECI	CCNNGG	7 cut(s)	62, 350, 770, 892, 1506, 1995, 2426
BssNI	GRCGYC	2 cut(s)	16, 2547
BssT1I	CCWWGG	4 cut(s)	350, 892, 1995, 2426
Bst2UI	CCWGG	6 cut(s)	642, 772, 1507, 2343, 2384, 2393
Bst4CI	ACNGT	4 cut(s)	759, 1495, 1617, 1845
Bst6I	CTCTTC	7 cut(s)	118, 393, 992, 1278, 1856, 2364, 2619
BstACI	GRCGYC	2 cut(s)	16, 2547
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBAI	YACGTR	1 cut(s)	2081
BstBI	TTCGAA	1 cut(s)	2714
BstC8I	GCNNGC	2 cut(s)	1258, 2611
BstDSI	CCRYGG	1 cut(s)	892
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstF5I	GGATG	9 cut(s)	13, 495, 637, 1249, 1357, 1475, 1575, 1723, 1991
BstFNI	CGCG	2 cut(s)	543, 2251
BstMAI	GTCTC	6 cut(s)	78, 846, 862, 989, 1059, 1955
BstMWI	GCNNNNNNNGC	8 cut(s)	611, 732, 1372, 1381, 1997, 2142, 2695, 2704
BstNI	CCWGG	6 cut(s)	642, 772, 1507, 2343, 2384, 2393
BstNSI	RCATGY	2 cut(s)	474, 1211
BstPAI	GACNNNNGTC	1 cut(s)	2550
BstSCI	CCNGG	6 cut(s)	640, 770, 1505, 2341, 2382, 2391
BstSFI	CTRYAG	6 cut(s)	939, 1671, 1695, 1869, 1956, 2581
BstSLI	GKGCMC	1 cut(s)	2032
BstUI	CGCG	2 cut(s)	543, 2251
BstX2I	RGATCY	2 cut(s)	82, 1462
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	2 cut(s)	82, 1462
BsuI	GTATCC	1 cut(s)	1654
BsuRI	GGCC	5 cut(s)	223, 464, 796, 976, 1505
BtgI	CCRYGG	1 cut(s)	892
BtsCI	GGATG	9 cut(s)	13, 495, 637, 1249, 1357, 1475, 1575, 1723, 1991
BtsIMutI	CAGTG	2 cut(s)	536, 959
BveI	ACCTGC	1 cut(s)	596
Cac8I	GCNNGC	2 cut(s)	1258, 2611
CciI	TCATGA	1 cut(s)	631
Cfr10I	RCCGGY	2 cut(s)	1068, 2609
Cfr13I	GGNCC	2 cut(s)	896, 1503
CseI	GACGC	2 cut(s)	5, 2555
Csp6I	GTAC	7 cut(s)	906, 970, 1006, 2078, 2206, 2313, 2499
CspAI	ACCGGT	1 cut(s)	1068
CviQI	GTAC	7 cut(s)	906, 970, 1006, 2078, 2206, 2313, 2499
DraI	TTTAAA	1 cut(s)	1314
Eam1104I	CTCTTC	7 cut(s)	118, 393, 992, 1278, 1856, 2364, 2619
EarI	CTCTTC	7 cut(s)	118, 393, 992, 1278, 1856, 2364, 2619
Eco130I	CCWWGG	4 cut(s)	350, 892, 1995, 2426
Eco31I	GGTCTC	5 cut(s)	78, 846, 989, 1059, 1955
Eco32I	GATATC	2 cut(s)	160, 1223
Eco47I	GGWCC	1 cut(s)	896
Eco57I	CTGAAG	2 cut(s)	585, 1623
Eco88I	CYCGRG	1 cut(s)	2437
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoRI	GAATTC	4 cut(s)	145, 229, 319, 1970
EcoRII	CCWGG	6 cut(s)	640, 770, 1505, 2341, 2382, 2391
EcoRV	GATATC	2 cut(s)	160, 1223
EcoT14I	CCWWGG	4 cut(s)	350, 892, 1995, 2426
EcoT22I	ATGCAT	1 cut(s)	1993
ErhI	CCWWGG	4 cut(s)	350, 892, 1995, 2426
FalI	AAGNNNNNCTT	2 cut(s)	1275, 1307
FauI	CCCGC	1 cut(s)	2150
FauNDI	CATATG	2 cut(s)	447, 2572
FbaI	TGATCA	4 cut(s)	628, 634, 1300, 1369
FokI	GGATG	9 cut(s)	20, 502, 624, 1256, 1364, 1462, 1562, 1730, 1978
FspBI	CTAG	8 cut(s)	300, 351, 678, 861, 1460, 1722, 2532, 2720
GsuI	CTGGAG	2 cut(s)	983, 1081
HaeIII	GGCC	5 cut(s)	223, 464, 796, 976, 1505
HapII	CCGG	3 cut(s)	119, 1069, 2610
HgaI	GACGC	2 cut(s)	5, 2555
Hin1I	GRCGYC	2 cut(s)	16, 2547
HincII	GTYRAC	2 cut(s)	1801, 2335
HindII	GTYRAC	2 cut(s)	1801, 2335
HindIII	AAGCTT	1 cut(s)	724
HpaI	GTTAAC	1 cut(s)	2335
HpaII	CCGG	3 cut(s)	119, 1069, 2610
Hpy166II	GTNNAC	8 cut(s)	755, 899, 1006, 1343, 1801, 2030, 2208, 2335
Hpy8I	GTNNAC	8 cut(s)	755, 899, 1006, 1343, 1801, 2030, 2208, 2335
HpyAV	CCTTC	4 cut(s)	185, 609, 1586, 2626
HpyCH4III	ACNGT	4 cut(s)	759, 1495, 1617, 1845
HpyCH4IV	ACGT	3 cut(s)	2080, 2106, 2239
HpyF10VI	GCNNNNNNNGC	8 cut(s)	611, 732, 1372, 1381, 1997, 2142, 2695, 2704
HpySE526I	ACGT	3 cut(s)	2080, 2106, 2239
Hsp92I	GRCGYC	2 cut(s)	16, 2547
KroI	GCCGGC	1 cut(s)	2609
KroNI	GCCGGC	1 cut(s)	2611
Ksp22I	TGATCA	4 cut(s)	628, 634, 1300, 1369
KspAI	GTTAAC	1 cut(s)	2335
LmnI	GCTCC	2 cut(s)	354, 1427
LweI	GCATC	9 cut(s)	523, 601, 1143, 1342, 1353, 1527, 1708, 2000, 2467
MaeI	CTAG	8 cut(s)	300, 351, 678, 861, 1460, 1722, 2532, 2720
MaeII	ACGT	3 cut(s)	2080, 2106, 2239
MaeIII	GTNAC	3 cut(s)	2160, 2291, 2488
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	2 cut(s)	82, 1462
MhlI	GDGCHC	1 cut(s)	2032
MlyI	GAGTC	5 cut(s)	355, 586, 784, 790, 2099
MmeI	TCCRAC	4 cut(s)	313, 1503, 1827, 2636
Mph1103I	ATGCAT	1 cut(s)	1993
MroNI	GCCGGC	1 cut(s)	2609
MroXI	GAANNNNTTC	4 cut(s)	182, 1616, 2188, 2566
MslI	CAYNNNNRTG	4 cut(s)	519, 630, 642, 812
MspA1I	CMGCKG	3 cut(s)	2136, 2586, 2692
MspI	CCGG	3 cut(s)	119, 1069, 2610
MspR9I	CCNGG	6 cut(s)	642, 772, 1507, 2343, 2384, 2393
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	3 cut(s)	1096, 1827, 2154
MvaI	CCWGG	6 cut(s)	642, 772, 1507, 2343, 2384, 2393
MvnI	CGCG	2 cut(s)	543, 2251
MwoI	GCNNNNNNNGC	8 cut(s)	611, 732, 1372, 1381, 1997, 2142, 2695, 2704
NaeI	GCCGGC	1 cut(s)	2611
NcoI	CCATGG	1 cut(s)	892
NdeI	CATATG	2 cut(s)	447, 2572
NgoMIV	GCCGGC	1 cut(s)	2609
NlaIV	GGNNCC	1 cut(s)	84
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	3 cut(s)	2160, 2291, 2488
NsiI	ATGCAT	1 cut(s)	1993
NspI	RCATGY	2 cut(s)	474, 1211
NspV	TTCGAA	1 cut(s)	2714
PagI	TCATGA	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	596
PciI	ACATGT	2 cut(s)	470, 1207
PctI	GAATGC	3 cut(s)	1096, 1827, 2154
PdiI	GCCGGC	1 cut(s)	2611
PdmI	GAANNNNTTC	4 cut(s)	182, 1616, 2188, 2566
PinAI	ACCGGT	1 cut(s)	1068
PleI	GAGTC	5 cut(s)	354, 585, 783, 789, 2098
PpsI	GAGTC	5 cut(s)	354, 585, 783, 789, 2098
Ppu21I	YACGTR	1 cut(s)	2081
PscI	ACATGT	2 cut(s)	470, 1207
PshAI	GACNNNNGTC	1 cut(s)	2550
PshBI	ATTAAT	1 cut(s)	2348
Psp6I	CCWGG	6 cut(s)	640, 770, 1505, 2341, 2382, 2391
PspGI	CCWGG	6 cut(s)	640, 770, 1505, 2341, 2382, 2391
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	896, 1503
PstI	CTGCAG	4 cut(s)	943, 1675, 1699, 2585
PsuI	RGATCY	2 cut(s)	82, 1462
PvuII	CAGCTG	2 cut(s)	2136, 2692
RsaI	GTAC	7 cut(s)	907, 971, 1007, 2079, 2207, 2314, 2500
RsaNI	GTAC	7 cut(s)	906, 970, 1006, 2078, 2206, 2313, 2499
RseI	CAYNNNNRTG	4 cut(s)	519, 630, 642, 812
Sau96I	GGNCC	2 cut(s)	896, 1503
SchI	GAGTC	5 cut(s)	355, 586, 784, 790, 2099
ScrFI	CCNGG	6 cut(s)	642, 772, 1507, 2343, 2384, 2393
SduI	GDGCHC	1 cut(s)	2032
SfaNI	GCATC	9 cut(s)	523, 601, 1143, 1342, 1353, 1527, 1708, 2000, 2467
SfcI	CTRYAG	6 cut(s)	939, 1671, 1695, 1869, 1956, 2581
SfuI	TTCGAA	1 cut(s)	2714
SinI	GGWCC	1 cut(s)	896
SmiMI	CAYNNNNRTG	4 cut(s)	519, 630, 642, 812
SmlI	CTYRAG	4 cut(s)	925, 1292, 1769, 2674
SmoI	CTYRAG	4 cut(s)	925, 1292, 1769, 2674
SpeI	ACTAGT	1 cut(s)	2719
SsiI	CCGC	3 cut(s)	2143, 2249, 2586
SspMI	CTAG	8 cut(s)	300, 351, 678, 861, 1460, 1722, 2532, 2720
StyD4I	CCNGG	6 cut(s)	640, 770, 1505, 2341, 2382, 2391
StyI	CCWWGG	4 cut(s)	350, 892, 1995, 2426
TaaI	ACNGT	4 cut(s)	759, 1495, 1617, 1845
TaiI	ACGT	3 cut(s)	2083, 2109, 2242
TaqI	TCGA	4 cut(s)	580, 810, 1452, 2714
TatI	WGTACW	4 cut(s)	969, 1005, 2205, 2312
TauI	GCSGC	1 cut(s)	2589
TscAI	CASTG	2 cut(s)	536, 966
TseFI	GTSAC	3 cut(s)	2160, 2291, 2488
Tsp45I	GTSAC	3 cut(s)	2160, 2291, 2488
TspGWI	ACGGA	1 cut(s)	1843
TspRI	CASTG	2 cut(s)	536, 966
VneI	GTGCAC	1 cut(s)	2028
VpaK11BI	GGWCC	1 cut(s)	896
VspI	ATTAAT	1 cut(s)	2348
XagI	CCTNNNNNAGG	1 cut(s)	603
XbaI	TCTAGA	1 cut(s)	860
XceI	RCATGY	2 cut(s)	474, 1211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1154
XmaJI	CCTAGG	1 cut(s)	350
XmnI	GAANNNNTTC	4 cut(s)	182, 1616, 2188, 2566
XspI	CTAG	8 cut(s)	300, 351, 678, 861, 1460, 1722, 2532, 2720
Zsp2I	ATGCAT	1 cut(s)	1993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.