Rmu_sc0012403.1_g000007

DNA polymerase III

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012403.1
Physical Location & Seq
Forward (+)
34670 .. 36593
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012403.1_g000007.1.cds

Sequence Viewer

Length: 1554 bp
atgggtggcgtcattctgttgatatacctctctccgaaagctcttttggttctgccgagggtgaggtctctaagggatccattaactaattctatgagcaaattctcttctccggttgagaatgttaattgggaaacgaattcaggtaatgatatctctatgctattcttgaatactttccaagaaggtggttctgacaatcgtagttgtttgaggccaaagaattcggatttgtatggacaaatagaggagtgctttgatgattttgaactaaacttgggtttagaaaagtctaggttgatcctgcatgagaattcagagtgggttggaagctcagggagtcctaggagcaatcggggtgaaaaatttgatatttcagggtcagataaggaagaggtttttagaaataaatcaccgattcagagatataagagcaatcatatggataaaggattggccttgacatgtgttaagcctttgaggatgtggattacgaagaaactgagtcgaactggcagtccatacccttcagcaggtgatgctatttcaagccatggtacacccatttttgcaaacgaagaggttggtattggagatcatgatcatcctgacgatatttcactttatgaccacagaagcttgaaacgcataggtaatgaaaccagttcacagttagaaaagcccaggagtctgagtcagaaattcaggccaaagtctttcatcgatgtggtgggacaaaatgttgttgcgaggtctcttttgggtgctgtctctaggggaagaataacctcattctatcttttccatggtccacaaggtacaggaaagacatcagcctcaagaatttttgctgcagcacttaattgtctttcactggaggagtacaggccgtgtggtctctgctgcgagtgtaatgtgtacttttctggaaacagcagagatatcaaggaaatagattctgtgagaatcaatgggagagaccggtttaggtgtcttattatgaatgcagctacacctcccgtttcttcactgtttaaggttttcatcattgatgagtgccacttgatgcgtggggaaacatgggcgactattttgagtagcaccgataacctttctcaacatgttgtctttgtgatgatcactcctgatctggataagctgccgcagaatcagtatcacggtccgagagatatcacttcccaaagattaaggatggttgctttaaacttcattgctgccaaatcaaatggttcacttagggatgaagagatgatgcttgatcagctaagtttgcttggtaaaaaaatcacaatgggcttggcatacgagcttattggagctgtttctgatgatgaattactcgatttgctagatctggcattgtcatctgacacttctaatacagttttaagggcctgggagttgatgagatcaaggattgatccgatgcaacttatatcgcagttggcaaatcttattatggacatccttgctggtgaggaaggtggttctgaagtccagaaacagttctctcgtaggtatacctgtaagtag

Protein Analysis

517

Amino Acids

57.77

Weight (kDa)

6.58

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 524
Acc36I ACCTGC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 1541
AciI CCGC 1 cut(s) 1163
AclWI GGATC 4 cut(s) 71, 84, 295, 1436
AcsI RAATTY 7 cut(s) 101, 139, 223, 313, 365, 701, 843
AcuI CTGAAG 2 cut(s) 513, 1533
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 4 cut(s) 559, 820, 884, 920
AfiI CCNNNNNNNGG 1 cut(s) 533
AflIII ACRYGT 2 cut(s) 464, 1120
AgeI ACCGGT 1 cut(s) 981
AgsI TTSAA 4 cut(s) 172, 269, 549, 643
AjnI CCWGG 2 cut(s) 683, 1415
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AloI GAACNNNNNNTCC 2 cut(s) 502, 534
AluBI AGCT 8 cut(s) 41, 333, 639, 1010, 1159, 1285, 1330, 1340
AluI AGCT 8 cut(s) 41, 333, 639, 1010, 1159, 1285, 1330, 1340
Alw26I GTCTC 5 cut(s) 72, 759, 775, 902, 972
AlwI GGATC 4 cut(s) 71, 84, 295, 1436
AoxI GGCC 5 cut(s) 215, 456, 707, 887, 1413
ApeKI GCWGC 6 cut(s) 851, 854, 903, 1007, 1159, 1235
ApoI RAATTY 7 cut(s) 101, 139, 223, 313, 365, 701, 843
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
AsiGI ACCGGT 1 cut(s) 981
Asp700I GAANNNNTTC 2 cut(s) 176, 1526
AspA2I CCTAGG 1 cut(s) 344
AspS9I GGNCC 3 cut(s) 809, 1181, 1413
AsuHPI GGTGA 5 cut(s) 73, 371, 405, 548, 1508
AvaII GGWCC 2 cut(s) 809, 1181
AvrII CCTAGG 1 cut(s) 344
BamHI GGATCC 1 cut(s) 76
BbvI GCAGC 6 cut(s) 838, 866, 890, 1019, 1146, 1222
BccI CCATC 1 cut(s) 1207
BceAI ACGGC 1 cut(s) 874
BciT130I CCWGG 2 cut(s) 685, 1417
BclI TGATCA 3 cut(s) 601, 1137, 1279
BcoDI GTCTC 5 cut(s) 72, 759, 775, 902, 972
BfaI CTAG 4 cut(s) 294, 345, 774, 1370
BfmI CTRYAG 1 cut(s) 852
BfuAI ACCTGC 1 cut(s) 524
BglII AGATCT 1 cut(s) 1372
BisI GCNGC 7 cut(s) 852, 855, 904, 1008, 1160, 1163, 1236
BlnI CCTAGG 1 cut(s) 344
BlsI GCNGC 7 cut(s) 853, 856, 905, 1009, 1161, 1164, 1237
Bme1390I CCNGG 2 cut(s) 685, 1417
Bme18I GGWCC 2 cut(s) 809, 1181
BmgT120I GGNCC 3 cut(s) 809, 1181, 1413
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 685, 1417
BmsI GCATC 4 cut(s) 529, 1056, 1263, 1437
BpmI CTGGAG 1 cut(s) 896
Bpu10I CCTNAGC 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 823
Bsa29I ATCGAT 1 cut(s) 723
BsaBI GATNNNNATC 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 4 cut(s) 72, 759, 902, 972
BsaJI CCNNGG 6 cut(s) 56, 344, 553, 683, 805, 1416
BsaWI WCCGGW 2 cut(s) 112, 981
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse118I RCCGGY 1 cut(s) 981
Bse1I ACTGG 3 cut(s) 517, 663, 879
Bse3DI GCAATG 1 cut(s) 1230
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 2 cut(s) 685, 1417
BseCI ATCGAT 1 cut(s) 723
BseDI CCNNGG 6 cut(s) 56, 344, 553, 683, 805, 1416
BseGI GGATG 5 cut(s) 489, 604, 1218, 1267, 1485
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMI GCAATG 1 cut(s) 1230
BseMII CTCAG 3 cut(s) 348, 494, 683
BseNI ACTGG 3 cut(s) 517, 663, 879
BseRI GAGGAG 2 cut(s) 263, 893
BseXI GCAGC 6 cut(s) 838, 866, 890, 1019, 1146, 1222
BshFI GGCC 5 cut(s) 217, 458, 709, 889, 1415
BshTI ACCGGT 1 cut(s) 981
BshVI ATCGAT 1 cut(s) 723
BsiSI CCGG 2 cut(s) 113, 982
BslFI GGGAC 1 cut(s) 747
BslI CCNNNNNNNGG 1 cut(s) 533
BsmAI GTCTC 5 cut(s) 72, 759, 775, 902, 972
BsmFI GGGAC 1 cut(s) 747
BsmI GAATGC 1 cut(s) 1009
BsnI GGCC 5 cut(s) 217, 458, 709, 889, 1415
Bso31I GGTCTC 4 cut(s) 72, 759, 902, 972
Bsp19I CCATGG 2 cut(s) 553, 805
BspACI CCGC 1 cut(s) 1163
BspANI GGCC 5 cut(s) 217, 458, 709, 889, 1415
BspCNI CTCAG 3 cut(s) 347, 495, 684
BspDI ATCGAT 1 cut(s) 723
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 1 cut(s) 856
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 4 cut(s) 71, 84, 295, 1436
BspTNI GGTCTC 4 cut(s) 72, 759, 902, 972
BsrDI GCAATG 1 cut(s) 1230
BsrFI RCCGGY 1 cut(s) 981
BsrI ACTGG 3 cut(s) 517, 663, 879
BssAI RCCGGY 1 cut(s) 981
BssECI CCNNGG 6 cut(s) 56, 344, 553, 683, 805, 1416
BssNAI GTATAC 1 cut(s) 1542
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 3 cut(s) 344, 553, 805
Bst1107I GTATAC 1 cut(s) 1542
Bst2UI CCWGG 2 cut(s) 685, 1417
Bst4CI ACNGT 5 cut(s) 672, 1032, 1181, 1405, 1527
Bst6I CTCTTC 4 cut(s) 112, 387, 573, 1260
BstACI GRCGYC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 539
BstDEI CTNAG 6 cut(s) 71, 334, 503, 692, 1256, 1286
BstDSI CCRYGG 2 cut(s) 553, 805
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 5 cut(s) 489, 604, 1218, 1267, 1485
BstMAI GTCTC 5 cut(s) 72, 759, 775, 902, 972
BstMWI GCNNNNNNNGC 4 cut(s) 539, 645, 1282, 1291
BstNI CCWGG 2 cut(s) 685, 1417
BstNSI RCATGY 2 cut(s) 468, 1124
BstSCI CCNGG 2 cut(s) 683, 1415
BstSFI CTRYAG 1 cut(s) 852
BstV1I GCAGC 6 cut(s) 838, 866, 890, 1019, 1146, 1222
BstX2I RGATCY 2 cut(s) 76, 1372
BstXI CCANNNNNNTGG 1 cut(s) 188
BstYI RGATCY 2 cut(s) 76, 1372
BstZ17I GTATAC 1 cut(s) 1542
Bsu15I ATCGAT 1 cut(s) 723
BsuRI GGCC 5 cut(s) 217, 458, 709, 889, 1415
BsuTUI ATCGAT 1 cut(s) 723
BtgI CCRYGG 2 cut(s) 553, 805
BtsCI GGATG 5 cut(s) 489, 604, 1218, 1267, 1485
BtsIMutI CAGTG 2 cut(s) 872, 1028
BveI ACCTGC 1 cut(s) 524
CciI TCATGA 1 cut(s) 598
Cfr10I RCCGGY 1 cut(s) 981
Cfr13I GGNCC 3 cut(s) 809, 1181, 1413
ClaI ATCGAT 1 cut(s) 723
CpoI CGGWCCG 1 cut(s) 1181
Csp6I GTAC 4 cut(s) 558, 819, 883, 919
CspAI ACCGGT 1 cut(s) 981
CspI CGGWCCG 1 cut(s) 1181
CviAII CATG 7 cut(s) 308, 465, 554, 599, 806, 1080, 1121
CviQI GTAC 4 cut(s) 558, 819, 883, 919
DdeI CTNAG 6 cut(s) 71, 334, 503, 692, 1256, 1286
DraI TTTAAA 1 cut(s) 1224
Eam1104I CTCTTC 4 cut(s) 112, 387, 573, 1260
EarI CTCTTC 4 cut(s) 112, 387, 573, 1260
Eco130I CCWWGG 3 cut(s) 344, 553, 805
Eco31I GGTCTC 4 cut(s) 72, 759, 902, 972
Eco32I GATATC 3 cut(s) 154, 943, 1192
Eco47I GGWCC 2 cut(s) 809, 1181
Eco57I CTGAAG 2 cut(s) 513, 1533
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 1413
EcoRI GAATTC 3 cut(s) 139, 223, 313
EcoRII CCWGG 2 cut(s) 683, 1415
EcoRV GATATC 3 cut(s) 154, 943, 1192
EcoT14I CCWWGG 3 cut(s) 344, 553, 805
ErhI CCWWGG 3 cut(s) 344, 553, 805
FaeI CATG 7 cut(s) 311, 468, 557, 602, 809, 1083, 1124
FaqI GGGAC 1 cut(s) 747
FatI CATG 7 cut(s) 307, 464, 553, 598, 805, 1079, 1120
FauNDI CATATG 1 cut(s) 441
FbaI TGATCA 3 cut(s) 601, 1137, 1279
FblI GTMKAC 1 cut(s) 1541
Fnu4HI GCNGC 7 cut(s) 852, 855, 904, 1008, 1160, 1163, 1236
FokI GGATG 5 cut(s) 496, 591, 1225, 1274, 1472
Fsp4HI GCNGC 7 cut(s) 852, 855, 904, 1008, 1160, 1163, 1236
FspBI CTAG 4 cut(s) 294, 345, 774, 1370
GluI GCNGC 7 cut(s) 852, 855, 904, 1008, 1160, 1163, 1236
GsuI CTGGAG 1 cut(s) 896
HaeIII GGCC 5 cut(s) 217, 458, 709, 889, 1415
HapII CCGG 2 cut(s) 113, 982
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 7 cut(s) 311, 468, 557, 602, 809, 1083, 1124
HindIII AAGCTT 1 cut(s) 637
HinfI GANTC 8 cut(s) 340, 418, 505, 688, 694, 956, 966, 1168
HpaII CCGG 2 cut(s) 113, 982
HphI GGTGA 5 cut(s) 73, 371, 405, 548, 1508
Hpy166II GTNNAC 6 cut(s) 560, 668, 812, 919, 1253, 1542
Hpy188III TCNNGA 8 cut(s) 169, 599, 608, 840, 927, 1145, 1151, 1519
Hpy8I GTNNAC 6 cut(s) 560, 668, 812, 919, 1253, 1542
HpyAV CCTTC 3 cut(s) 179, 537, 1496
HpyCH4III ACNGT 5 cut(s) 672, 1032, 1181, 1405, 1527
HpyCH4V TGCA 5 cut(s) 307, 572, 854, 1007, 1450
HpyF10VI GCNNNNNNNGC 4 cut(s) 539, 645, 1282, 1291
HpyF3I CTNAG 6 cut(s) 71, 334, 503, 692, 1256, 1286
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 7 cut(s) 311, 468, 557, 602, 809, 1083, 1124
Ksp22I TGATCA 3 cut(s) 601, 1137, 1279
LmnI GCTCC 2 cut(s) 348, 1337
Lsp1109I GCAGC 6 cut(s) 838, 866, 890, 1019, 1146, 1222
LweI GCATC 4 cut(s) 529, 1056, 1263, 1437
MaeI CTAG 4 cut(s) 294, 345, 774, 1370
MboII GAAGA 7 cut(s) 99, 404, 508, 590, 792, 1017, 1277
MflI RGATCY 2 cut(s) 76, 1372
MlyI GAGTC 4 cut(s) 349, 514, 697, 703
MmeI TCCRAC 1 cut(s) 307
MroXI GAANNNNTTC 2 cut(s) 176, 1526
MseI TTAA 8 cut(s) 83, 126, 471, 861, 1035, 1208, 1223, 1409
MslI CAYNNNNRTG 1 cut(s) 725
MspI CCGG 2 cut(s) 113, 982
MspR9I CCNGG 2 cut(s) 685, 1417
Mva1269I GAATGC 1 cut(s) 1009
MvaI CCWGG 2 cut(s) 685, 1417
MwoI GCNNNNNNNGC 4 cut(s) 539, 645, 1282, 1291
NcoI CCATGG 2 cut(s) 553, 805
NdeI CATATG 1 cut(s) 441
NlaIII CATG 7 cut(s) 311, 468, 557, 602, 809, 1083, 1124
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 81
NspI RCATGY 2 cut(s) 468, 1124
PagI TCATGA 1 cut(s) 598
PaqCI CACCTGC 1 cut(s) 524
PciI ACATGT 2 cut(s) 464, 1120
PctI GAATGC 1 cut(s) 1009
PdmI GAANNNNTTC 2 cut(s) 176, 1526
PfeI GAWTC 4 cut(s) 418, 956, 966, 1168
PinAI ACCGGT 1 cut(s) 981
PkrI GCNGC 7 cut(s) 853, 856, 905, 1009, 1161, 1164, 1237
PleI GAGTC 4 cut(s) 348, 513, 696, 702
PpsI GAGTC 4 cut(s) 348, 513, 696, 702
PscI ACATGT 2 cut(s) 464, 1120
Psp6I CCWGG 2 cut(s) 683, 1415
PspGI CCWGG 2 cut(s) 683, 1415
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 3 cut(s) 809, 1181, 1413
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 2 cut(s) 76, 1372
RsaI GTAC 4 cut(s) 559, 820, 884, 920
RsaNI GTAC 4 cut(s) 558, 819, 883, 919
RseI CAYNNNNRTG 1 cut(s) 725
Rsr2I CGGWCCG 1 cut(s) 1181
RsrII CGGWCCG 1 cut(s) 1181
SaqAI TTAA 8 cut(s) 83, 126, 471, 861, 1035, 1208, 1223, 1409
SatI GCNGC 7 cut(s) 852, 855, 904, 1008, 1160, 1163, 1236
Sau96I GGNCC 3 cut(s) 809, 1181, 1413
SchI GAGTC 4 cut(s) 349, 514, 697, 703
ScrFI CCNGG 2 cut(s) 685, 1417
SfaNI GCATC 4 cut(s) 529, 1056, 1263, 1437
SfcI CTRYAG 1 cut(s) 852
SinI GGWCC 2 cut(s) 809, 1181
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 1 cut(s) 838
SmoI CTYRAG 1 cut(s) 838
SsiI CCGC 1 cut(s) 1163
SspMI CTAG 4 cut(s) 294, 345, 774, 1370
StyD4I CCNGG 2 cut(s) 683, 1415
StyI CCWWGG 3 cut(s) 344, 553, 805
TaaI ACNGT 5 cut(s) 672, 1032, 1181, 1405, 1527
TaqI TCGA 3 cut(s) 508, 723, 1362
TatI WGTACW 2 cut(s) 882, 918
TauI GCSGC 1 cut(s) 1165
TfiI GAWTC 4 cut(s) 418, 956, 966, 1168
Tru1I TTAA 8 cut(s) 83, 126, 471, 861, 1035, 1208, 1223, 1409
Tru9I TTAA 8 cut(s) 83, 126, 471, 861, 1035, 1208, 1223, 1409
TscAI CASTG 2 cut(s) 879, 1035
TseI GCWGC 6 cut(s) 851, 854, 903, 1007, 1159, 1235
TspDTI ATGAA 7 cut(s) 672, 709, 1016, 1033, 1219, 1278, 1368
TspRI CASTG 2 cut(s) 879, 1035
VpaK11BI GGWCC 2 cut(s) 809, 1181
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 7 cut(s) 101, 139, 223, 313, 365, 701, 843
XceI RCATGY 2 cut(s) 468, 1124
XcmI CCANNNNNNNNNTGG 1 cut(s) 1067
XmaJI CCTAGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 1541
XmnI GAANNNNTTC 2 cut(s) 176, 1526
XspI CTAG 4 cut(s) 294, 345, 774, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.