Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Forward (+)

57492961 .. 57494776

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTGGTTGTAAGTACATTGAGAAATAGTGAAGGAAACATACTGAGCACAAGAGCGGCATCATCCCGCAGATCATTTGAAGATGATACACCAAAGGCACCTGGATTAATGGTTGATTCTTCAAAGGAAGAGGGAAGCAACCAGGACTGCCAGGTTTTATCTTTTCATCAACCTGAACATCAACCAAGGTGTTTCCCGAGAACTCTGAGGATTCAAAAGAAGTTGTGTTCGGCAGATGCTACTCAGGTGACCTGTTGTACTAAACTACAAAACAAGTTTGCAATCCCAAGTAGGACATCTTTTGAAGCTTGTCTTTTGGGAAGTGATTCATATGCTTTCTGCAGCGGCTCTGACAATGGTAACAACACTGACAACTATAAAGAAGAGTTGAAGGAAAATTCAGGTGTGCTTTGTTGGAAAACCCCCCACGCTTCCCTCAGGAAAGGATTGGCAGCTGAGGCACCAACAGAAAAAATTCGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

161

Amino Acids

17.73

Weight (kDa)

8.12

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	97, 460
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	3 cut(s)	56, 67, 345
AcsI	RAATTY	2 cut(s)	397, 474
AfaI	GTAC	2 cut(s)	16, 259
AgsI	TTSAA	5 cut(s)	80, 123, 215, 305, 391
AjnI	CCWGG	3 cut(s)	100, 141, 150
AluBI	AGCT	2 cut(s)	308, 455
AluI	AGCT	2 cut(s)	308, 455
Alw21I	GWGCWC	1 cut(s)	50
Ama87I	CYCGRG	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	342, 452
ApoI	RAATTY	2 cut(s)	397, 474
AseI	ATTAAT	1 cut(s)	107
Asp700I	GAANNNNTTC	2 cut(s)	325, 474
AsuHPI	GGTGA	1 cut(s)	259
AsuII	TTCGAA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	437
BanI	GGYRCC	2 cut(s)	97, 460
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	354, 464
BciT130I	CCWGG	3 cut(s)	102, 143, 152
BfaI	CTAG	1 cut(s)	484
BfmI	CTRYAG	1 cut(s)	340
BisI	GCNGC	4 cut(s)	57, 343, 346, 453
BlsI	GCNGC	4 cut(s)	58, 344, 347, 454
Bme1390I	CCNGG	3 cut(s)	102, 143, 152
BmeT110I	CYCGRG	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	99, 462
BmrFI	CCNGG	3 cut(s)	102, 143, 152
BmsI	GCATC	2 cut(s)	68, 226
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu14I	TTCGAA	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	185
Bse21I	CCTNAGG	1 cut(s)	437
BseBI	CCWGG	3 cut(s)	102, 143, 152
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	62
BseMII	CTCAG	5 cut(s)	35, 197, 257, 447, 451
BseXI	GCAGC	2 cut(s)	354, 464
BshNI	GGYRCC	2 cut(s)	97, 460
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	196
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	3 cut(s)	56, 67, 345
BspCNI	CTCAG	5 cut(s)	36, 198, 256, 448, 450
BspLI	GGNNCC	2 cut(s)	99, 462
BspMAI	CTGCAG	1 cut(s)	344
BspT104I	TTCGAA	1 cut(s)	478
BspT107I	GGYRCC	2 cut(s)	97, 460
BsrBI	CCGCTC	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	3 cut(s)	102, 143, 152
Bst6I	CTCTTC	2 cut(s)	123, 378
BstBI	TTCGAA	1 cut(s)	478
BstDEI	CTNAG	5 cut(s)	44, 206, 243, 437, 456
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	3 cut(s)	102, 143, 152
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	3 cut(s)	100, 141, 150
BstSFI	CTRYAG	1 cut(s)	340
BstV1I	GCAGC	2 cut(s)	354, 464
Bsu36I	CCTNAGG	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	15, 258
CviJI	RGCY	3 cut(s)	308, 348, 455
CviKI_1	RGCY	3 cut(s)	308, 348, 455
CviQI	GTAC	2 cut(s)	15, 258
DdeI	CTNAG	5 cut(s)	44, 206, 243, 437, 456
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	123, 378
EarI	CTCTTC	2 cut(s)	123, 378
Eco130I	CCWWGG	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	196
Eco91I	GGTNACC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	100, 141, 150
EcoT14I	CCWWGG	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	185
FaiI	YATR	4 cut(s)	41, 331, 333, 378
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FauI	CCCGC	1 cut(s)	74
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	4 cut(s)	57, 343, 346, 453
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	4 cut(s)	57, 343, 346, 453
FspBI	CTAG	1 cut(s)	484
GluI	GCNGC	4 cut(s)	57, 343, 346, 453
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	3 cut(s)	116, 211, 326
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	207, 352
Hpy188III	TCNNGA	2 cut(s)	196, 439
HpyAV	CCTTC	2 cut(s)	26, 385
HpyCH4V	TGCA	2 cut(s)	281, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	5 cut(s)	44, 206, 243, 437, 456
Kzo9I	GATC	1 cut(s)	71
Lsp1109I	GCAGC	2 cut(s)	354, 464
LweI	GCATC	2 cut(s)	68, 226
MaeI	CTAG	1 cut(s)	484
MaeIII	GTNAC	2 cut(s)	247, 359
MalI	GATC	1 cut(s)	73
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	1 cut(s)	71
MboII	GAAGA	4 cut(s)	92, 111, 140, 395
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	2 cut(s)	397, 474
MmeI	TCCRAC	1 cut(s)	395
MnlI	CCTC	4 cut(s)	124, 201, 446, 451
MroXI	GAANNNNTTC	2 cut(s)	325, 474
MseI	TTAA	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	345, 455
MspR9I	CCNGG	3 cut(s)	102, 143, 152
MvaI	CCWGG	3 cut(s)	102, 143, 152
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	1 cut(s)	71
NlaIV	GGNNCC	2 cut(s)	99, 462
NmuCI	GTSAC	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	478
PdmI	GAANNNNTTC	2 cut(s)	325, 474
PfeI	GAWTC	3 cut(s)	116, 211, 326
PkrI	GCNGC	4 cut(s)	58, 344, 347, 454
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	3 cut(s)	100, 141, 150
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	3 cut(s)	100, 141, 150
PspN4I	GGNNCC	2 cut(s)	99, 462
PstI	CTGCAG	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	2 cut(s)	16, 259
RsaNI	GTAC	2 cut(s)	15, 258
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	4 cut(s)	57, 343, 346, 453
Sau3AI	GATC	1 cut(s)	71
ScrFI	CCNGG	3 cut(s)	102, 143, 152
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	9 cut(s)	103, 156, 175, 191, 249, 254, 310, 406, 457
SfaNI	GCATC	2 cut(s)	68, 226
SfcI	CTRYAG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	478
Sse9I	AATT	2 cut(s)	397, 474
SsiI	CCGC	3 cut(s)	56, 67, 345
SspMI	CTAG	1 cut(s)	484
StyD4I	CCNGG	3 cut(s)	100, 141, 150
StyI	CCWWGG	1 cut(s)	185
TaqI	TCGA	1 cut(s)	478
TasI	AATT	2 cut(s)	397, 474
TatI	WGTACW	2 cut(s)	14, 257
TauI	GCSGC	2 cut(s)	59, 348
TfiI	GAWTC	3 cut(s)	116, 211, 326
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	342, 452
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	155, 318
TspRI	CASTG	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	2 cut(s)	397, 474
XmnI	GAANNNNTTC	2 cut(s)	325, 474
XspI	CTAG	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.