Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001101

Physical Location & Seq

Genomic Coordinates Reverse (-)

57918765 .. 57919175

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG412000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGATGAACAGTTGGAATCCGTATGGAAGAGAGCTATAGATTTATGCCAATCCAAGTCATTCAAGAACTTTTTGAGGAAACAAGGAAGATTGTCGTCTCTATTTGTGAATCAAGGTCTCGCTATAGCTGAATTGGAATTCTGCCACCCTGATTATGCATCCAAGGCTGAGAAGTCATGGAAAATCATTGCAAGTGCACTCCAATCTCTATTCGGTTGTAATGTGGAGATCAGGATCAATCTTGTACGTGCTACCGAGTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

88

Amino Acids

10.04

Weight (kDa)

8.91

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaA_N-like_STI	PF23007	3 - 81	3.9e-32	STICHEL, DnaA_N-like alpha-beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24790 AT4G24790 AT4G24790 AT4G24790 AT4G24790
fragaria_vesca	FvH4_5g06841
malus_domestica	MD06G1160000.v1.1 MD14G1166000.v1.1
prunus_persica	Prupe.5G160500_v2.0.a1
pyrus_communis	pycom06g14310 pycom14g13860 pycom14g13870
rosa_chinensis	RchiOBHm_Chr7g0191751 RchiOBHm_Chr7g0232131
rosa_laevigata	RLG00000001389 RLG00000001431 RLG00000004429
rosa_multiflora	Rmu_co8050558.1_g000001 Rmu_co8237971.1_g000001 Rmu_co8286355.1_g000001 Rmu_co8458339.1_g000001 Rmu_sc0000616.1_g000013 Rmu_sc0003901.1_g000007 Rmu_sc0012403.1_g000007
rosa_roxburghii	Rroxscaffold_3G00228760 Rroxscaffold_3G00263560 Rroxscaffold_3G00263570 Rroxscaffold_3G00263580
rosa_rugosa	Rorug06G0511100 Rorug07G0265100 Rorug07G0265200 Rorug07G0269600
rosa_samantha	Rh7AG120700 Rh7AG417900 Rh7AG418000 Rh7AG418100 Rh7AG418200 Rh7AG424100 Rh7AG424200 Rh7BG122500 Rh7BG397900 Rh7BG398000 Rh7BG398100 Rh7CG125300 Rh7CG437800 Rh7CG437900 Rh7CG444400 Rh7CG444500 Rh7DG124000 Rh7DG411900 Rh7DG412000 Rh7DG412100 Rh7DG412200 Rh7DG416000 Rh7DG416100 Rh7DG416200
rosa_wichuraiana	Rw7G010290 Rw7G034600 Rw7G035070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	2 cut(s)	35, 128
AluI	AGCT	2 cut(s)	35, 128
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	102, 122
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	242
ApaLI	GTGCAC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	102, 122
BfmI	CTRYAG	2 cut(s)	36, 123
BmsI	GCATC	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	10, 158
BseJI	GATNNNNATC	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	159
BseSI	GKGCMC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	102, 122
BsmBI	CGTCTC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	228, 234
BspCNI	CTCAG	1 cut(s)	160
BspPI	GGATC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	228, 234
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	2 cut(s)	10, 158
BstKTI	GATC	2 cut(s)	231, 237
BstMAI	GTCTC	2 cut(s)	102, 122
BstMBI	GATC	2 cut(s)	228, 234
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstSFI	CTRYAG	2 cut(s)	36, 123
BstSLI	GKGCMC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	10, 158
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	1 cut(s)	177
CviJI	RGCY	3 cut(s)	35, 128, 167
CviKI_1	RGCY	3 cut(s)	35, 128, 167
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	230, 236
DpnII	GATC	2 cut(s)	228, 234
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	1 cut(s)	180
FaiI	YATR	6 cut(s)	25, 38, 46, 125, 156, 178
FatI	CATG	1 cut(s)	176
FokI	GGATG	2 cut(s)	17, 145
Hin1II	CATG	1 cut(s)	180
HinfI	GANTC	3 cut(s)	17, 109, 257
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188III	TCNNGA	2 cut(s)	64, 232
Hpy8I	GTNNAC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	158, 191, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	228, 234
LpnPI	CCDG	2 cut(s)	162, 217
LweI	GCATC	1 cut(s)	167
MaeII	ACGT	1 cut(s)	247
MalI	GATC	2 cut(s)	230, 236
MboI	GATC	2 cut(s)	228, 234
MboII	GAAGA	2 cut(s)	40, 99
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	2 cut(s)	131, 137
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	2 cut(s)	228, 234
NlaIII	CATG	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	17, 109
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	248
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	228, 234
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	4 cut(s)	37, 118, 130, 250
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	2 cut(s)	36, 123
Sse9I	AATT	2 cut(s)	131, 137
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	250
TasI	AATT	2 cut(s)	131, 137
TfiI	GAWTC	2 cut(s)	17, 109
TspDTI	ATGAA	1 cut(s)	21
TspGWI	ACGGA	1 cut(s)	10
VneI	GTGCAC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.