RchiOBHm_Chr7g0213991

DA1-related 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030536
Physical Location & Seq
Forward (+)
31150836 .. 31152359
1524 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1254 bp
ATGGCGTCGACCTCCCAAACATCCTCCACATCCGCTCATTCAGCACATCCTTATGATGGGCTTCTGAGTTTTAGAGGGGAACTCTGCAAGGATTTTGCATACGAATTATGCTATGCATTGCAGGAGCGAGGAATCACGGTGTTCATGGACCATGAAAGCACAGCTACTTCTATCTTGACTACGACAACGAAAAAATCAAGGTTTGCCATCGTTGTCCTTTCCCCAGAATATGCTTCTTCCACCTTCTGCTTAGATAAACTTTCAAGCATTATGGGATACATGCGAGGTACAATTTTCCCAGTTTTCTACGAGGTAAAACCCTCCGATTTACGCAAGCAGGAGGGATGTTTAAAAAGTGCGTTTGACATGCATGAAAGAGTAGAAGACCCGTCAAAGATGGAAGGGTGGAGGACTGCTTTAAGGAAAGTGGCTTGTGTCTCTGGTTGGACTTCAAAACATGGTGACAGTGAGACCAAGCTAATCATCAAAGAAATTGTAGAACACTGCTATAGTTTTTGTGATGTAATTCATGATAAGAAGGGTACTTTTATGCCAGCAAATAAGTCGAGTCAAATTGAAAATGGGAAAGTGGAACATCCTTTCTTGCCACAAAATGATTGTCCAAGGTGTTGTGGCTGCAGTAAGAAATGGAAGCTAGGGGACACAGCATGGCTTCAATTTGATGATGGCCTATCTCTATGTACGGGGTGTCAAGAGTCTGCAATTAAGGTAACCGAAGAATGTCAATCCCCTTACCTTAATCACCATATGAAATTGGAGCATCAGCATCAAAATCCACTGCAGTTGGTTGGCAGACATTCTGTAGGGAAGTATAATGTGCTTTTGAGTTTCAGTGGGGAAACCTGCAAGGATTTTATAGACCATTTATACAAAGCACTGCAAGAGCGAGGAATCAGTGTGTACAGGGATGATGAACATACAGATACTTTTATCCCGAGTACAGCAACCAATTCAAGGTTTGCCATCATCGTCCTCTCGCCAGAATATGTTTTATCAGACTGCTGCTTCGACAAACTTAGAAACATATTTGAATGCATGCAAGGCAAAATTTTACCAATTTTCTTTAATGTGGAAACCTCCATTTTACGAAAGAAAAATGGATTCGCAAGAACAGGCTTCGACATGCTTGATACAGAAGACATGGGAAAGCTGGAGTGGTGGACAACTGCTCCGAAAGAAGTGGCTGATATAGCTGGTTGGGTTTCAACTGACTGGTATGCAATGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0032182 GO:0043130 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DA1-like LIM

Protein Analysis

417

Amino Acids

47.34

Weight (kDa)

6.07

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 21 - 176 5.1e-26 TIR domain
TIR_2 PF13676 22 - 110 4.6e-09 TIR domain
TIR PF01582 277 - 413 4.4e-16 TIR domain
TIR_2 PF13676 280 - 365 3.6e-09 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030536)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0213991
rosa_samantha Rh7AG278500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 872
AccBSI CCGCTC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 8
AciI CCGC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 1068
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 5 cut(s) 289, 544, 703, 923, 961
AfiI CCNNNNNNNGG 2 cut(s) 56, 975
AgsI TTSAA 7 cut(s) 264, 453, 578, 677, 975, 1052, 1227
AluBI AGCT 5 cut(s) 164, 478, 655, 1171, 1214
AluI AGCT 5 cut(s) 164, 478, 655, 1171, 1214
Alw26I GTCTC 2 cut(s) 442, 464
Ama87I CYCGRG 1 cut(s) 955
AoxI GGCC 1 cut(s) 688
ApeKI GCWGC 2 cut(s) 636, 1023
ApoI RAATTY 1 cut(s) 1068
ArsI GACNNNNNNTTYG 4 cut(s) 604, 636, 1010, 1042
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 473, 755
AvaI CYCGRG 1 cut(s) 955
AvaII GGWCC 1 cut(s) 148
BbsI GAAGAC 2 cut(s) 390, 1164
BbvI GCAGC 2 cut(s) 623, 1010
BccI CCATC 5 cut(s) 50, 215, 391, 680, 992
BcgI CGANNNNNNTGC 2 cut(s) 546, 580
BciVI GTATCC 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 442, 464
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 4 cut(s) 508, 637, 800, 822
BfuAI ACCTGC 1 cut(s) 872
BfuI GTATCC 1 cut(s) 269
BisI GCNGC 2 cut(s) 637, 1024
BlsI GCNGC 2 cut(s) 638, 1025
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 955
BmgT120I GGNCC 1 cut(s) 148
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 2 cut(s) 790, 796
BmuI ACTGGG 1 cut(s) 293
BpiI GAAGAC 2 cut(s) 390, 1164
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpmI CTGGAG 1 cut(s) 1193
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 623
BsaXI ACNNNNNCTCC 2 cut(s) 1174, 1204
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 975
Bse1I ACTGG 2 cut(s) 299, 1238
Bse3DI GCAATG 2 cut(s) 116, 1248
BseDI CCNNGG 1 cut(s) 623
BseGI GGATG 6 cut(s) 20, 29, 46, 350, 595, 934
BseLI CCNNNNNNNGG 2 cut(s) 56, 975
BseMI GCAATG 2 cut(s) 116, 1248
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 299, 1238
BseXI GCAGC 2 cut(s) 623, 1010
BshFI GGCC 1 cut(s) 690
BsiHKCI CYCGRG 1 cut(s) 955
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 2 cut(s) 56, 975
BsmAI GTCTC 2 cut(s) 442, 464
BsmFI GGGAC 1 cut(s) 674
BsmI GAATGC 1 cut(s) 1058
BsnI GGCC 1 cut(s) 690
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 955
Bsp1407I TGTACA 1 cut(s) 921
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 690
BspCNI CTCAG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 529
BspMAI CTGCAG 2 cut(s) 641, 804
BspMI ACCTGC 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 464
BsrBI CCGCTC 1 cut(s) 35
BsrDI GCAATG 2 cut(s) 116, 1248
BsrGI TGTACA 1 cut(s) 921
BsrI ACTGG 2 cut(s) 299, 1238
BssECI CCNNGG 1 cut(s) 623
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 623
Bst4CI ACNGT 2 cut(s) 139, 467
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 921
BstC8I GCNNGC 3 cut(s) 335, 555, 1058
BstDEI CTNAG 3 cut(s) 65, 250, 1037
BstEII GGTNACC 1 cut(s) 730
BstF5I GGATG 6 cut(s) 20, 29, 46, 350, 595, 934
BstMAI GTCTC 2 cut(s) 442, 464
BstMWI GCNNNNNNNGC 3 cut(s) 41, 1062, 1211
BstNSI RCATGY 4 cut(s) 283, 370, 1060, 1147
BstPI GGTNACC 1 cut(s) 730
BstSFI CTRYAG 4 cut(s) 508, 637, 800, 822
BstV1I GCAGC 2 cut(s) 623, 1010
BstV2I GAAGAC 2 cut(s) 390, 1164
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 690
BtsCI GGATG 6 cut(s) 20, 29, 46, 350, 595, 934
BtsI GCAGTG 3 cut(s) 502, 797, 896
BtsIMutI CAGTG 6 cut(s) 472, 502, 797, 859, 896, 922
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 3 cut(s) 335, 555, 1058
CciI TCATGA 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 5 cut(s) 288, 543, 702, 922, 960
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviQI GTAC 5 cut(s) 288, 543, 702, 922, 960
DdeI CTNAG 3 cut(s) 65, 250, 1037
DraI TTTAAA 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 623
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 955
Eco91I GGTNACC 1 cut(s) 730
EcoO65I GGTNACC 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 623
EcoT22I ATGCAT 4 cut(s) 118, 372, 1058, 1248
ErhI CCWWGG 1 cut(s) 623
FaqI GGGAC 1 cut(s) 674
FauNDI CATATG 1 cut(s) 768
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 637, 1024
FokI GGATG 6 cut(s) 7, 16, 33, 357, 582, 941
Fsp4HI GCNGC 2 cut(s) 637, 1024
FspBI CTAG 1 cut(s) 656
GluI GCNGC 2 cut(s) 637, 1024
GsuI CTGGAG 1 cut(s) 1193
HaeIII GGCC 1 cut(s) 690
Hin1I GRCGYC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 5 cut(s) 132, 568, 716, 912, 1122
HphI GGTGA 2 cut(s) 473, 755
Hpy166II GTNNAC 3 cut(s) 9, 922, 1182
Hpy188I TCNGA 4 cut(s) 66, 325, 1018, 1194
Hpy188III TCNNGA 4 cut(s) 175, 530, 713, 955
Hpy8I GTNNAC 3 cut(s) 9, 922, 1182
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 253, 395, 532
HpyCH4III ACNGT 2 cut(s) 139, 467
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 1062, 1211
HpyF3I CTNAG 3 cut(s) 65, 250, 1037
Hsp92I GRCGYC 1 cut(s) 5
LmnI GCTCC 3 cut(s) 124, 778, 1195
Lsp1109I GCAGC 2 cut(s) 623, 1010
LweI GCATC 2 cut(s) 790, 796
MaeI CTAG 1 cut(s) 656
MaeIII GTNAC 2 cut(s) 461, 730
MbiI CCGCTC 1 cut(s) 35
MboII GAAGA 4 cut(s) 228, 395, 749, 1169
MlyI GAGTC 2 cut(s) 577, 725
MmeI TCCRAC 1 cut(s) 425
Mph1103I ATGCAT 4 cut(s) 118, 372, 1058, 1248
MseI TTAA 5 cut(s) 350, 419, 726, 759, 1086
MslI CAYNNNNRTG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 1058
MwoI GCNNNNNNNGC 3 cut(s) 41, 1062, 1211
NdeI CATATG 1 cut(s) 768
NmuCI GTSAC 1 cut(s) 461
NsiI ATGCAT 4 cut(s) 118, 372, 1058, 1248
NspI RCATGY 4 cut(s) 283, 370, 1060, 1147
PaeI GCATGC 1 cut(s) 1060
PagI TCATGA 1 cut(s) 529
PctI GAATGC 1 cut(s) 1058
PfeI GAWTC 3 cut(s) 132, 912, 1122
PkrI GCNGC 2 cut(s) 638, 1025
PleI GAGTC 2 cut(s) 576, 724
PpsI GAGTC 2 cut(s) 576, 724
PspEI GGTNACC 1 cut(s) 730
PspPI GGNCC 1 cut(s) 148
PstI CTGCAG 2 cut(s) 641, 804
RsaI GTAC 5 cut(s) 289, 544, 703, 923, 961
RsaNI GTAC 5 cut(s) 288, 543, 702, 922, 960
RseI CAYNNNNRTG 1 cut(s) 51
SalI GTCGAC 1 cut(s) 7
SaqAI TTAA 5 cut(s) 350, 419, 726, 759, 1086
SatI GCNGC 2 cut(s) 637, 1024
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 577, 725
SfaNI GCATC 2 cut(s) 790, 796
SfcI CTRYAG 4 cut(s) 508, 637, 800, 822
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 51
SphI GCATGC 1 cut(s) 1060
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 656
StyI CCWWGG 1 cut(s) 623
TaaI ACNGT 2 cut(s) 139, 467
TaqI TCGA 4 cut(s) 8, 566, 1029, 1140
TatI WGTACW 2 cut(s) 921, 959
TfiI GAWTC 3 cut(s) 132, 912, 1122
Tru1I TTAA 5 cut(s) 350, 419, 726, 759, 1086
Tru9I TTAA 5 cut(s) 350, 419, 726, 759, 1086
TscAI CASTG 6 cut(s) 472, 509, 804, 859, 903, 922
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 2 cut(s) 636, 1023
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 6 cut(s) 133, 168, 387, 518, 785, 948
TspRI CASTG 6 cut(s) 472, 509, 804, 859, 903, 922
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 1068
XceI RCATGY 4 cut(s) 283, 370, 1060, 1147
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 1 cut(s) 656
Zsp2I ATGCAT 4 cut(s) 118, 372, 1058, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.