Rh7AG278500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
29224931 .. 29230547
5617 bp
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UTR
Exon/CDS
Intron
Rh7AG278500.1

Sequence Viewer

Length: 423 bp
ATGTTCCATTTCATCTCTCTCAACAACCACAATGAGAATGAGTCTTCGAAGATTGACAGTGAGACCAAGCTAATCATCAAAGAAATTGTAGAACACTGCTATAGTTTTTGTGATGTAATTCATGATAAGAAGGGTACTTTTATACCAGCAAATAAGTCGAGTCAAATTGAAAATGGGAAAGTGGAACATCCTTTCTTGCCACAAAATGATTGTCCAAGGTGTTGTGGCTGCAGTAAGAAATGGAAGCTAGGGGACACAGCATGGCTTCAATTTGATGATGGCCTATCTCTATGTACGGGGTGTCAAGAGTCTGCAATTAAGATTCAAGTCAAGCTGAGTATGTGGAACATCCTTTCTGGGGACAAAATTACTGCCCCTCTCATGAGGGCACTACTCGAAAGTGTTGTAGCTGTGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.74

Weight (kDa)

6.19

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030536)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0213991
rosa_samantha Rh7AG278500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 136, 295
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 3 cut(s) 170, 269, 326
AluBI AGCT 4 cut(s) 70, 247, 334, 410
AluI AGCT 4 cut(s) 70, 247, 334, 410
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AsuII TTCGAA 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 215
BccI CCATC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 2 cut(s) 100, 229
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 187, 348
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 1 cut(s) 282
BslFI GGGAC 2 cut(s) 266, 374
BslI CCNNNNNNNGG 1 cut(s) 358
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 266, 374
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 391
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 327
BspHI TCATGA 2 cut(s) 121, 381
BspMAI CTGCAG 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 187, 348
BstMAI GTCTC 1 cut(s) 56
BstSFI CTRYAG 2 cut(s) 100, 229
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 36
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 2 cut(s) 187, 348
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 64, 94
CciI TCATGA 2 cut(s) 121, 381
Csp6I GTAC 2 cut(s) 135, 294
CviAII CATG 3 cut(s) 122, 261, 382
CviJI RGCY 7 cut(s) 70, 228, 247, 265, 282, 334, 410
CviKI_1 RGCY 7 cut(s) 70, 228, 247, 265, 282, 334, 410
CviQI GTAC 2 cut(s) 135, 294
DdeI CTNAG 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 3 cut(s) 125, 264, 385
FaiI YATR 7 cut(s) 102, 123, 143, 262, 292, 341, 383
FaqI GGGAC 2 cut(s) 266, 374
FatI CATG 3 cut(s) 121, 260, 381
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 2 cut(s) 174, 335
Fsp4HI GCNGC 1 cut(s) 229
FspBI CTAG 1 cut(s) 248
GluI GCNGC 1 cut(s) 229
HaeIII GGCC 1 cut(s) 282
Hin1II CATG 3 cut(s) 125, 264, 385
HinfI GANTC 4 cut(s) 41, 160, 308, 322
Hpy188III TCNNGA 3 cut(s) 122, 305, 382
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 231, 314
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 3 cut(s) 125, 264, 385
LpnPI CCDG 2 cut(s) 159, 342
Lsp1109I GCAGC 1 cut(s) 215
MaeI CTAG 1 cut(s) 248
MboII GAAGA 2 cut(s) 36, 61
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 6 cut(s) 84, 117, 165, 269, 315, 366
MlyI GAGTC 3 cut(s) 50, 169, 317
MnlI CCTC 2 cut(s) 378, 387
MseI TTAA 1 cut(s) 318
NlaIII CATG 3 cut(s) 125, 264, 385
NspV TTCGAA 1 cut(s) 47
PagI TCATGA 2 cut(s) 121, 381
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 230
PleI GAGTC 3 cut(s) 49, 168, 316
PpsI GAGTC 3 cut(s) 49, 168, 316
PstI CTGCAG 1 cut(s) 233
RsaI GTAC 2 cut(s) 136, 295
RsaNI GTAC 2 cut(s) 135, 294
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 229
SchI GAGTC 3 cut(s) 50, 169, 317
SduI GDGCHC 1 cut(s) 391
SetI ASST 5 cut(s) 72, 221, 249, 336, 412
SfcI CTRYAG 2 cut(s) 100, 229
SfuI TTCGAA 1 cut(s) 47
Sse9I AATT 6 cut(s) 84, 117, 165, 269, 315, 366
SspMI CTAG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 47, 158, 396
TasI AATT 6 cut(s) 84, 117, 165, 269, 315, 366
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 64, 101
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 2 cut(s) 64, 101
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.