Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022823

Physical Location & Seq

Genomic Coordinates Forward (+)

33357545 .. 33358404

Gene Structure 860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAAGCACAGAATTTGGGGAATGTAAAGCGACGGTTAGCAAAACTATTTGAAGAGTCACTGAAAGCAATAGTCTCTGGGGAATGTAACCCGTCTGTTGCAGCTTCCACAAGGAAACATGGCGATTATCAGTGCAACAACGCCATGGCTTTATGGACCAAAATCAAAGGAAAGGACTCAAAGGAGGGCAATGAGTTTAAAGACGCTGAGTCTATTGGGCATGCCATAATGCAAAACCTTCCACAATCCGAAATCGTAGAATCATGCTCTGTGGCAAGGCCTGGATTTAAGATGCTTGTTGATGGCATTGAAACATGGGCGCCGCAGCTGCAGATGAAAAGGGTTGTGGTGGACTTTTCGTCTCCGAATATAGCAAAAGAGATGGAAGATTTTAGCGGAATAGCCATTGGAGATCTGCAGGTTTTGTATAAAGAAGCCAATGATAGATTTAAACGTGATCCCGAGTTTAAGGAGTCAGCACGAAAGGCAGTGGTTAAGCTTCAGAGTGGGAAGTCTAAGTACCGCAAGTACCGCAAGGCGTGGGAGCAAATCTGTGAAACTAGTCGGAGAGAATTTCAGAAGATTTATCAACGCCTTGGAGTTGAGTTGGAGGAAAAGGGAGAAAGCTTTTACAACCAGTATATTCCTGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

218

Amino Acids

24.84

Weight (kDa)

8.9

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arg_tRNA_synt_N	PF03485	12 - 96	4.6e-10	Arginyl tRNA synthetase N terminal domain
tRNA-synt_1d	PF00750	135 - 217	4.8e-18	tRNA synthetases class I (R), catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022823)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0215661
rosa_multiflora	Rmu_sc0000898.1_g000028
rosa_rugosa	Rorug07G0156100
rosa_samantha	Rh7DG296100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	319
AciI	CCGC	4 cut(s)	323, 396, 523, 532
AclWI	GGATC	1 cut(s)	452
AcsI	RAATTY	2 cut(s)	13, 572
AcuI	CTGAAG	1 cut(s)	485
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	2 cut(s)	521, 530
AgsI	TTSAA	2 cut(s)	53, 311
AhdI	GACNNNNNGTC	2 cut(s)	208, 358
AhlI	ACTAGT	1 cut(s)	560
AjnI	CCWGG	2 cut(s)	280, 646
AluBI	AGCT	4 cut(s)	104, 328, 499, 627
AluI	AGCT	4 cut(s)	104, 328, 499, 627
Alw26I	GTCTC	2 cut(s)	79, 366
AlwI	GGATC	1 cut(s)	452
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	101, 325, 328
ApoI	RAATTY	2 cut(s)	13, 572
AspLEI	GCGC	1 cut(s)	322
AspS9I	GGNCC	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	319
BarI	GAAGNNNNNNTAC	2 cut(s)	503, 535
BbvI	GCAGC	3 cut(s)	113, 315, 337
BccI	CCATC	2 cut(s)	296, 376
BciT130I	CCWGG	2 cut(s)	282, 648
BcoDI	GTCTC	2 cut(s)	79, 366
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	329, 416
BfoI	RGCGCY	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	409
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	4 cut(s)	102, 323, 326, 329
BlsI	GCNGC	4 cut(s)	103, 324, 327, 330
Bme1390I	CCNGG	2 cut(s)	282, 648
Bme18I	GGWCC	1 cut(s)	156
BmeRI	GACNNNNNGTC	2 cut(s)	208, 358
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	282, 648
BmsI	GCATC	1 cut(s)	282
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	3 cut(s)	144, 595, 647
Bse1I	ACTGG	1 cut(s)	637
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	282, 648
BseDI	CCNNGG	3 cut(s)	144, 595, 647
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	637
BseXI	GCAGC	3 cut(s)	113, 315, 337
BshFI	GGCC	1 cut(s)	280
BshNI	GGYRCC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	461
BsmAI	GTCTC	2 cut(s)	79, 366
BsmBI	CGTCTC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	280
BsoBI	CYCGRG	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	412, 457
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	4 cut(s)	323, 396, 523, 532
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	2 cut(s)	333, 420
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	452
BspT107I	GGYRCC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	637
BssECI	CCNNGG	3 cut(s)	144, 595, 647
BssMI	GATC	2 cut(s)	412, 457
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	2 cut(s)	144, 595
Bst2UI	CCWGG	2 cut(s)	282, 648
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	207, 516
BstDSI	CCRYGG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	2 cut(s)	415, 460
BstMAI	GTCTC	2 cut(s)	79, 366
BstMBI	GATC	2 cut(s)	412, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 485, 531
BstNI	CCWGG	2 cut(s)	282, 648
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	280, 646
BstSFI	CTRYAG	2 cut(s)	329, 416
BstV1I	GCAGC	3 cut(s)	113, 315, 337
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	280
BtgI	CCRYGG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	3 cut(s)	59, 137, 495
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	520, 529
CviAII	CATG	5 cut(s)	119, 145, 221, 264, 315
CviJI	RGCY	8 cut(s)	104, 149, 280, 328, 404, 437, 499, 627
CviKI_1	RGCY	8 cut(s)	104, 149, 280, 328, 404, 437, 499, 627
CviQI	GTAC	2 cut(s)	520, 529
DdeI	CTNAG	2 cut(s)	207, 516
DinI	GGCGCC	1 cut(s)	321
DpnI	GATC	2 cut(s)	414, 459
DpnII	GATC	2 cut(s)	412, 457
DraI	TTTAAA	2 cut(s)	199, 451
DriI	GACNNNNNGTC	2 cut(s)	208, 358
Eam1104I	CTCTTC	1 cut(s)	48
Eam1105I	GACNNNNNGTC	2 cut(s)	208, 358
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	144, 595
Eco147I	AGGCCT	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	485
Eco88I	CYCGRG	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	280, 646
EcoT14I	CCWWGG	2 cut(s)	144, 595
EgeI	GGCGCC	1 cut(s)	321
EheI	GGCGCC	1 cut(s)	321
ErhI	CCWWGG	2 cut(s)	144, 595
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	5 cut(s)	122, 148, 224, 267, 318
FatI	CATG	5 cut(s)	118, 144, 220, 263, 314
Fnu4HI	GCNGC	4 cut(s)	102, 323, 326, 329
Fsp4HI	GCNGC	4 cut(s)	102, 323, 326, 329
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	4 cut(s)	102, 323, 326, 329
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	280
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	322
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	5 cut(s)	122, 148, 224, 267, 318
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HindIII	AAGCTT	2 cut(s)	497, 625
HinfI	GANTC	5 cut(s)	56, 176, 209, 260, 473
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	5 cut(s)	250, 366, 504, 567, 579
Hpy188III	TCNNGA	1 cut(s)	461
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	5 cut(s)	101, 135, 232, 331, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 485, 531
HpyF3I	CTNAG	2 cut(s)	207, 516
HpySE526I	ACGT	1 cut(s)	454
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	5 cut(s)	122, 148, 224, 267, 318
HspAI	GCGC	1 cut(s)	320
KasI	GGCGCC	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	412, 457
LmnI	GCTCC	1 cut(s)	544
LpnPI	CCDG	6 cut(s)	63, 267, 294, 404, 633, 650
Lsp1109I	GCAGC	3 cut(s)	113, 315, 337
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	2 cut(s)	57, 86
MalI	GATC	2 cut(s)	414, 459
MboI	GATC	2 cut(s)	412, 457
MboII	GAAGA	3 cut(s)	65, 398, 592
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	2 cut(s)	13, 572
Mly113I	GGCGCC	1 cut(s)	320
MlyI	GAGTC	4 cut(s)	65, 170, 218, 482
MmeI	TCCRAC	2 cut(s)	545, 588
MnlI	CCTC	2 cut(s)	178, 604
MseI	TTAA	6 cut(s)	198, 288, 450, 468, 495, 655
MspA1I	CMGCKG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	282, 648
MvaI	CCWGG	2 cut(s)	282, 648
MwoI	GCNNNNNNNGC	3 cut(s)	328, 485, 531
NarI	GGCGCC	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	412, 457
NlaIII	CATG	5 cut(s)	122, 148, 224, 267, 318
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	103, 324, 327, 330
PleI	GAGTC	4 cut(s)	64, 170, 217, 481
PluTI	GGCGCC	1 cut(s)	323
PpsI	GAGTC	4 cut(s)	64, 170, 217, 481
Psp6I	CCWGG	2 cut(s)	280, 646
PspGI	CCWGG	2 cut(s)	280, 646
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	156
PstI	CTGCAG	2 cut(s)	333, 420
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	521, 530
RsaNI	GTAC	2 cut(s)	520, 529
SaqAI	TTAA	6 cut(s)	198, 288, 450, 468, 495, 655
SatI	GCNGC	4 cut(s)	102, 323, 326, 329
Sau3AI	GATC	2 cut(s)	412, 457
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	4 cut(s)	65, 170, 218, 482
ScrFI	CCNGG	2 cut(s)	282, 648
SetI	ASST	7 cut(s)	106, 240, 330, 423, 457, 501, 629
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	2 cut(s)	329, 416
SfoI	GGCGCC	1 cut(s)	321
SinI	GGWCC	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	560
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	13, 572
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	4 cut(s)	323, 396, 523, 532
SspDI	GGCGCC	1 cut(s)	319
SspMI	CTAG	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	280, 646
StyI	CCWWGG	2 cut(s)	144, 595
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	457
TasI	AATT	2 cut(s)	13, 572
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	6 cut(s)	198, 288, 450, 468, 495, 655
Tru9I	TTAA	6 cut(s)	198, 288, 450, 468, 495, 655
TscAI	CASTG	3 cut(s)	66, 137, 495
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	3 cut(s)	101, 325, 328
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	350
TspRI	CASTG	3 cut(s)	66, 137, 495
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	2 cut(s)	13, 572
XceI	RCATGY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.