Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0022823

Physical Location & Seq

Genomic Coordinates Forward (+)

33662515 .. 33662835

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG296100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAAGCACAGAATTTGGGGAATGTAAAGCGACAGTTAGCAAAACTATTTGAAGAGTCACTGAAAGCAATAGTCTCTGGGGAATGTAACCCGTCTGTTGCAGCTTCCACAAGGAAACATGGCGATTATCAGTGCAACAACGCCATGGCTTTATGGACCAAAATCAAAGGAAAGGACTCAAAGGAGGGCAATGAGTTTAAAGACGCTGAGTCTATTGGGCATGCCATAATGCAAAACCTTCCACAATCCGAAATCGTAGAATCATGCTCTGGCAAGGCCTGGATTTGTGAATATTATATTGTCAAAGAGTTGGATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

106

Amino Acids

11.72

Weight (kDa)

5.68

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arg_tRNA_synt_N	PF03485	12 - 89	1.8e-07	Arginyl tRNA synthetase N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022823)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0215661
rosa_multiflora	Rmu_sc0000898.1_g000028
rosa_rugosa	Rorug07G0156100
rosa_samantha	Rh7DG296100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	53
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	156
AvaII	GGWCC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	156
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	278
Bsp19I	CCATGG	1 cut(s)	144
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	319
BstMAI	GTCTC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	280
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	59, 137
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	1 cut(s)	212
CviAII	CATG	4 cut(s)	119, 145, 221, 264
CviJI	RGCY	4 cut(s)	104, 149, 278, 318
CviKI_1	RGCY	4 cut(s)	104, 149, 278, 318
DdeI	CTNAG	1 cut(s)	207
DraI	TTTAAA	1 cut(s)	199
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	48
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	122, 148, 224, 267
FaiI	YATR	7 cut(s)	120, 146, 154, 222, 227, 265, 297
FatI	CATG	4 cut(s)	118, 144, 220, 263
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	278
HgaI	GACGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	122, 148, 224, 267
HinfI	GANTC	4 cut(s)	56, 176, 209, 260
Hpy188I	TCNGA	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	101, 135, 232
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	122, 148, 224, 267
LpnPI	CCDG	4 cut(s)	63, 255, 265, 292
Lsp1109I	GCAGC	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	57, 86
MboII	GAAGA	1 cut(s)	65
MluCI	AATT	1 cut(s)	13
MlyI	GAGTC	3 cut(s)	65, 170, 218
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	1 cut(s)	178
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
NcoI	CCATGG	1 cut(s)	144
NlaIII	CATG	4 cut(s)	122, 148, 224, 267
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	103
PleI	GAGTC	3 cut(s)	64, 170, 217
PpsI	GAGTC	3 cut(s)	64, 170, 217
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	3 cut(s)	65, 170, 218
ScrFI	CCNGG	1 cut(s)	280
SetI	ASST	2 cut(s)	106, 240
SinI	GGWCC	1 cut(s)	156
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	1 cut(s)	13
SseBI	AGGCCT	1 cut(s)	278
SspI	AATATT	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	36
TasI	AATT	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	66, 137
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	57
TspRI	CASTG	2 cut(s)	66, 137
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.